© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Sequences in assembly | 169 |
|---|---|
| Total assembly length (Mbp) | 35.65 |
| Assembly GC content (%) | 49.44 |
| Assembly gaps (%) | 0.01 |
| L50 number (#) | 30 |
| N50 length (bp) | 403187 |
| Total repeats (#) | 12034 |
| Repetitive content (bp, %) | 665579 (1.87%) |
| Genes | 11106 |
| Gene length (median) | 1440 |
| Transcript length (median) | 1266 |
| Exon length (median) | 227 |
| CDS length (median) | 1266 |
| Protein length (median) | 422 |
| Spliced genes (total, %) | 9029 (81.3%) |
| Exons per gene (median) | 3 |
| Intron length (median) | 61 |
| Introns per spliced gene (median) | 2 |
| Gene density (genes / Mbp) | 311.49 |
| Coding content of assembly (bp, %) | 16784298 (47.07%) |
| Proteins with internal stops (total, %) | 0 (0.0%) |
| Unique PFAM domains | 4092 |
| Genes with PFAM (total, %) | 8623 (77.64%) |
| Genes with GO (total, %) | 5570 (50.15%) |
| Genes with signalP (total, %) | 981 (8.83%) |
| Genes with TMHMM (total, %) | 2354 (21.2%) |
| Genes annotated as TF (total, %) | 545 (4.91%) |
| Genes annotated as MEROPS protease (total, %) | 365 (3.29%) |
| Genes annotated as CAZyme (total, %) | 495 (4.46%) |
| Secondary metabolism gene cluster | 72 |
| CEGMA completeness (%) | 99.13 |
| BUSCO2 completeness (fungi_odb9) | Complete: 98.97% (Single-copy: 98.28%, Duplicated: 0.69%), Fragmented: 1.03%, Missing: 0.0% |