Fungal Genomics

at Utrecht University

Genome Statistics

Sequences in assembly 263
Total assembly length (Mbp) 36.48
Assembly GC content (%) 49.46
Assembly gaps (%) 0.01
L50 number (#) 36
N50 length (bp) 322506
Total repeats (#) 12331
Repetitive content (bp, %) 834022 (2.29%)
Genes 11294
Gene length (median) 1433
Transcript length (median) 1257
Exon length (median) 227
CDS length (median) 1257
Protein length (median) 419
Spliced genes (total, %) 9130 (80.84%)
Exons per gene (median) 3
Intron length (median) 61
Introns per spliced gene (median) 2
Gene density (genes / Mbp) 309.55
Coding content of assembly (bp, %) 16940835 (46.43%)
Proteins with internal stops (total, %) 0 (0.0%)
Unique PFAM domains 4092
Genes with PFAM (total, %) 8675 (76.81%)
Genes with GO (total, %) 5601 (49.59%)
Genes with signalP (total, %) 1000 (8.85%)
Genes with TMHMM (total, %) 2388 (21.14%)
Genes annotated as TF (total, %) 555 (4.91%)
Genes annotated as MEROPS protease (total, %) 373 (3.3%)
Genes annotated as CAZyme (total, %) 498 (4.41%)
Secondary metabolism gene cluster 71
CEGMA completeness (%) 99.34
BUSCO2 completeness (fungi_odb9) Complete: 98.62% (Single-copy: 97.93%, Duplicated: 0.69%), Fragmented: 1.38%, Missing: 0.0%

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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