© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Sequences in assembly | 263 |
|---|---|
| Total assembly length (Mbp) | 36.48 |
| Assembly GC content (%) | 49.46 |
| Assembly gaps (%) | 0.01 |
| L50 number (#) | 36 |
| N50 length (bp) | 322506 |
| Total repeats (#) | 12331 |
| Repetitive content (bp, %) | 834022 (2.29%) |
| Genes | 11294 |
| Gene length (median) | 1433 |
| Transcript length (median) | 1257 |
| Exon length (median) | 227 |
| CDS length (median) | 1257 |
| Protein length (median) | 419 |
| Spliced genes (total, %) | 9130 (80.84%) |
| Exons per gene (median) | 3 |
| Intron length (median) | 61 |
| Introns per spliced gene (median) | 2 |
| Gene density (genes / Mbp) | 309.55 |
| Coding content of assembly (bp, %) | 16940835 (46.43%) |
| Proteins with internal stops (total, %) | 0 (0.0%) |
| Unique PFAM domains | 4092 |
| Genes with PFAM (total, %) | 8675 (76.81%) |
| Genes with GO (total, %) | 5601 (49.59%) |
| Genes with signalP (total, %) | 1000 (8.85%) |
| Genes with TMHMM (total, %) | 2388 (21.14%) |
| Genes annotated as TF (total, %) | 555 (4.91%) |
| Genes annotated as MEROPS protease (total, %) | 373 (3.3%) |
| Genes annotated as CAZyme (total, %) | 498 (4.41%) |
| Secondary metabolism gene cluster | 71 |
| CEGMA completeness (%) | 99.34 |
| BUSCO2 completeness (fungi_odb9) | Complete: 98.62% (Single-copy: 97.93%, Duplicated: 0.69%), Fragmented: 1.38%, Missing: 0.0% |