Fungal Genomics

at Utrecht University

Genome Statistics

Sequences in assembly 205
Total assembly length (Mbp) 35.76
Assembly GC content (%) 49.49
Assembly gaps (%) 0.01
L50 number (#) 35
N50 length (bp) 334720
Total repeats (#) 11995
Repetitive content (bp, %) 600724 (1.68%)
Genes 11166
Gene length (median) 1437
Transcript length (median) 1263
Exon length (median) 227
CDS length (median) 1263
Protein length (median) 421
Spliced genes (total, %) 9077 (81.29%)
Exons per gene (median) 3
Intron length (median) 61
Introns per spliced gene (median) 2
Gene density (genes / Mbp) 312.21
Coding content of assembly (bp, %) 16835061 (47.07%)
Proteins with internal stops (total, %) 0 (0.0%)
Unique PFAM domains 4090
Genes with PFAM (total, %) 8657 (77.53%)
Genes with GO (total, %) 5591 (50.07%)
Genes with signalP (total, %) 998 (8.94%)
Genes with TMHMM (total, %) 2360 (21.14%)
Genes annotated as TF (total, %) 548 (4.91%)
Genes annotated as MEROPS protease (total, %) 369 (3.3%)
Genes annotated as CAZyme (total, %) 495 (4.43%)
Secondary metabolism gene cluster 77
CEGMA completeness (%) 99.13
BUSCO2 completeness (fungi_odb9) Complete: 98.97% (Single-copy: 98.28%, Duplicated: 0.69%), Fragmented: 0.69%, Missing: 0.34%

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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