© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Sequences in assembly | 205 |
|---|---|
| Total assembly length (Mbp) | 35.76 |
| Assembly GC content (%) | 49.49 |
| Assembly gaps (%) | 0.01 |
| L50 number (#) | 35 |
| N50 length (bp) | 334720 |
| Total repeats (#) | 11995 |
| Repetitive content (bp, %) | 600724 (1.68%) |
| Genes | 11166 |
| Gene length (median) | 1437 |
| Transcript length (median) | 1263 |
| Exon length (median) | 227 |
| CDS length (median) | 1263 |
| Protein length (median) | 421 |
| Spliced genes (total, %) | 9077 (81.29%) |
| Exons per gene (median) | 3 |
| Intron length (median) | 61 |
| Introns per spliced gene (median) | 2 |
| Gene density (genes / Mbp) | 312.21 |
| Coding content of assembly (bp, %) | 16835061 (47.07%) |
| Proteins with internal stops (total, %) | 0 (0.0%) |
| Unique PFAM domains | 4090 |
| Genes with PFAM (total, %) | 8657 (77.53%) |
| Genes with GO (total, %) | 5591 (50.07%) |
| Genes with signalP (total, %) | 998 (8.94%) |
| Genes with TMHMM (total, %) | 2360 (21.14%) |
| Genes annotated as TF (total, %) | 548 (4.91%) |
| Genes annotated as MEROPS protease (total, %) | 369 (3.3%) |
| Genes annotated as CAZyme (total, %) | 495 (4.43%) |
| Secondary metabolism gene cluster | 77 |
| CEGMA completeness (%) | 99.13 |
| BUSCO2 completeness (fungi_odb9) | Complete: 98.97% (Single-copy: 98.28%, Duplicated: 0.69%), Fragmented: 0.69%, Missing: 0.34% |