Fungal Genomics

at Utrecht University

Genome Statistics

Sequences in assembly 335
Total assembly length (Mbp) 34.77
Assembly GC content (%) 50.05
Assembly gaps (%) 0.01
L50 number (#) 32
N50 length (bp) 326362
Total repeats (#) 11744
Repetitive content (bp, %) 681441 (1.96%)
Genes 11072
Gene length (median) 1439
Transcript length (median) 1263
Exon length (median) 228
CDS length (median) 1263
Protein length (median) 421
Spliced genes (total, %) 8999 (81.28%)
Exons per gene (median) 3
Intron length (median) 61
Introns per spliced gene (median) 2
Gene density (genes / Mbp) 318.41
Coding content of assembly (bp, %) 16739142 (48.14%)
Proteins with internal stops (total, %) 0 (0.0%)
Unique PFAM domains 4091
Genes with PFAM (total, %) 8621 (77.86%)
Genes with GO (total, %) 5579 (50.39%)
Genes with signalP (total, %) 992 (8.96%)
Genes with TMHMM (total, %) 2353 (21.25%)
Genes annotated as TF (total, %) 543 (4.9%)
Genes annotated as MEROPS protease (total, %) 363 (3.28%)
Genes annotated as CAZyme (total, %) 495 (4.47%)
Secondary metabolism gene cluster 76
CEGMA completeness (%) 99.13
BUSCO2 completeness (fungi_odb9) Complete: 99.31% (Single-copy: 98.62%, Duplicated: 0.69%), Fragmented: 0.69%, Missing: 0.0%

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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