© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Sequences in assembly | 472 |
|---|---|
| Total assembly length (Mbp) | 36.32 |
| Assembly GC content (%) | 50.01 |
| Assembly gaps (%) | 0.01 |
| L50 number (#) | 40 |
| N50 length (bp) | 310247 |
| Total repeats (#) | 11963 |
| Repetitive content (bp, %) | 761181 (2.1%) |
| Genes | 11360 |
| Gene length (median) | 1431 |
| Transcript length (median) | 1257 |
| Exon length (median) | 228 |
| CDS length (median) | 1257 |
| Protein length (median) | 419 |
| Spliced genes (total, %) | 9197 (80.96%) |
| Exons per gene (median) | 3 |
| Intron length (median) | 61 |
| Introns per spliced gene (median) | 2 |
| Gene density (genes / Mbp) | 312.81 |
| Coding content of assembly (bp, %) | 17088381 (47.05%) |
| Proteins with internal stops (total, %) | 0 (0.0%) |
| Unique PFAM domains | 4089 |
| Genes with PFAM (total, %) | 8715 (76.72%) |
| Genes with GO (total, %) | 5620 (49.47%) |
| Genes with signalP (total, %) | 996 (8.77%) |
| Genes with TMHMM (total, %) | 2403 (21.15%) |
| Genes annotated as TF (total, %) | 552 (4.86%) |
| Genes annotated as MEROPS protease (total, %) | 372 (3.27%) |
| Genes annotated as CAZyme (total, %) | 500 (4.4%) |
| Secondary metabolism gene cluster | 74 |
| CEGMA completeness (%) | 99.34 |
| BUSCO2 completeness (fungi_odb9) | Complete: 99.31% (Single-copy: 98.62%, Duplicated: 0.69%), Fragmented: 0.69%, Missing: 0.0% |