Fungal Genomics

at Utrecht University

Genome Statistics

Sequences in assembly 282
Total assembly length (Mbp) 35.81
Assembly GC content (%) 49.46
Assembly gaps (%) 0.01
L50 number (#) 41
N50 length (bp) 275995
Total repeats (#) 12338
Repetitive content (bp, %) 701924 (1.96%)
Genes 11102
Gene length (median) 1437
Transcript length (median) 1263
Exon length (median) 227
CDS length (median) 1263
Protein length (median) 421
Spliced genes (total, %) 9025 (81.29%)
Exons per gene (median) 3
Intron length (median) 61
Introns per spliced gene (median) 2
Gene density (genes / Mbp) 310.05
Coding content of assembly (bp, %) 16789752 (46.89%)
Proteins with internal stops (total, %) 0 (0.0%)
Unique PFAM domains 4087
Genes with PFAM (total, %) 8599 (77.45%)
Genes with GO (total, %) 5546 (49.95%)
Genes with signalP (total, %) 985 (8.87%)
Genes with TMHMM (total, %) 2344 (21.11%)
Genes annotated as TF (total, %) 540 (4.86%)
Genes annotated as MEROPS protease (total, %) 363 (3.27%)
Genes annotated as CAZyme (total, %) 493 (4.44%)
Secondary metabolism gene cluster 73
CEGMA completeness (%) 99.34
BUSCO2 completeness (fungi_odb9) Complete: 98.97% (Single-copy: 98.28%, Duplicated: 0.69%), Fragmented: 1.03%, Missing: 0.0%

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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