© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Sequences in assembly | 282 |
|---|---|
| Total assembly length (Mbp) | 35.81 |
| Assembly GC content (%) | 49.46 |
| Assembly gaps (%) | 0.01 |
| L50 number (#) | 41 |
| N50 length (bp) | 275995 |
| Total repeats (#) | 12338 |
| Repetitive content (bp, %) | 701924 (1.96%) |
| Genes | 11102 |
| Gene length (median) | 1437 |
| Transcript length (median) | 1263 |
| Exon length (median) | 227 |
| CDS length (median) | 1263 |
| Protein length (median) | 421 |
| Spliced genes (total, %) | 9025 (81.29%) |
| Exons per gene (median) | 3 |
| Intron length (median) | 61 |
| Introns per spliced gene (median) | 2 |
| Gene density (genes / Mbp) | 310.05 |
| Coding content of assembly (bp, %) | 16789752 (46.89%) |
| Proteins with internal stops (total, %) | 0 (0.0%) |
| Unique PFAM domains | 4087 |
| Genes with PFAM (total, %) | 8599 (77.45%) |
| Genes with GO (total, %) | 5546 (49.95%) |
| Genes with signalP (total, %) | 985 (8.87%) |
| Genes with TMHMM (total, %) | 2344 (21.11%) |
| Genes annotated as TF (total, %) | 540 (4.86%) |
| Genes annotated as MEROPS protease (total, %) | 363 (3.27%) |
| Genes annotated as CAZyme (total, %) | 493 (4.44%) |
| Secondary metabolism gene cluster | 73 |
| CEGMA completeness (%) | 99.34 |
| BUSCO2 completeness (fungi_odb9) | Complete: 98.97% (Single-copy: 98.28%, Duplicated: 0.69%), Fragmented: 1.03%, Missing: 0.0% |