Fungal Genomics

at Utrecht University

Genome Statistics

Sequences in assembly 940
Total assembly length (Mbp) 38.91
Assembly GC content (%) 50.03
Assembly gaps (%) 0.01
L50 number (#) 38
N50 length (bp) 293433
Total repeats (#) 13548
Repetitive content (bp, %) 1742552 (4.48%)
Genes 11934
Gene length (median) 1416
Transcript length (median) 1236
Exon length (median) 228
CDS length (median) 1236
Protein length (median) 412
Spliced genes (total, %) 9591 (80.37%)
Exons per gene (median) 3
Intron length (median) 61
Introns per spliced gene (median) 2
Gene density (genes / Mbp) 306.74
Coding content of assembly (bp, %) 17674650 (45.43%)
Proteins with internal stops (total, %) 0 (0.0%)
Unique PFAM domains 4101
Genes with PFAM (total, %) 8989 (75.32%)
Genes with GO (total, %) 5787 (48.49%)
Genes with signalP (total, %) 1032 (8.65%)
Genes with TMHMM (total, %) 2490 (20.86%)
Genes annotated as TF (total, %) 586 (4.91%)
Genes annotated as MEROPS protease (total, %) 389 (3.26%)
Genes annotated as CAZyme (total, %) 507 (4.25%)
Secondary metabolism gene cluster 74
CEGMA completeness (%) 99.13
BUSCO2 completeness (fungi_odb9) Complete: 98.97% (Single-copy: 97.93%, Duplicated: 1.03%), Fragmented: 1.03%, Missing: 0.0%

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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