© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Sequences in assembly | 940 |
|---|---|
| Total assembly length (Mbp) | 38.91 |
| Assembly GC content (%) | 50.03 |
| Assembly gaps (%) | 0.01 |
| L50 number (#) | 38 |
| N50 length (bp) | 293433 |
| Total repeats (#) | 13548 |
| Repetitive content (bp, %) | 1742552 (4.48%) |
| Genes | 11934 |
| Gene length (median) | 1416 |
| Transcript length (median) | 1236 |
| Exon length (median) | 228 |
| CDS length (median) | 1236 |
| Protein length (median) | 412 |
| Spliced genes (total, %) | 9591 (80.37%) |
| Exons per gene (median) | 3 |
| Intron length (median) | 61 |
| Introns per spliced gene (median) | 2 |
| Gene density (genes / Mbp) | 306.74 |
| Coding content of assembly (bp, %) | 17674650 (45.43%) |
| Proteins with internal stops (total, %) | 0 (0.0%) |
| Unique PFAM domains | 4101 |
| Genes with PFAM (total, %) | 8989 (75.32%) |
| Genes with GO (total, %) | 5787 (48.49%) |
| Genes with signalP (total, %) | 1032 (8.65%) |
| Genes with TMHMM (total, %) | 2490 (20.86%) |
| Genes annotated as TF (total, %) | 586 (4.91%) |
| Genes annotated as MEROPS protease (total, %) | 389 (3.26%) |
| Genes annotated as CAZyme (total, %) | 507 (4.25%) |
| Secondary metabolism gene cluster | 74 |
| CEGMA completeness (%) | 99.13 |
| BUSCO2 completeness (fungi_odb9) | Complete: 98.97% (Single-copy: 97.93%, Duplicated: 1.03%), Fragmented: 1.03%, Missing: 0.0% |