Fungal Genomics

at Utrecht University

Genome Statistics

Sequences in assembly 13
Total assembly length (Mbp) 30.42
Assembly GC content (%) 46.5
Assembly gaps (%) 0.43
L50 number (#) 5
N50 length (bp) 2550681
Genes 11971
Gene length (median) 1444
Transcript length (median) 1134
Exon length (median) 119
CDS length (median) 1134
Protein length (median) 378
Spliced genes (total, %) 10658 (89.03%)
Exons per gene (median) 5
Intron length (median) 54
Introns per spliced gene (median) 5
Gene density (genes / Mbp) 393.55
Coding content of assembly (bp, %) 16889748 (55.53%)
Proteins with internal stops (total, %) 0 (0.0%)
Unique PFAM domains 3667
Genes with PFAM (total, %) 7290 (60.9%)
Genes with GO (total, %) 4707 (39.32%)
Genes with signalP (total, %) 749 (6.26%)
Genes with TMHMM (total, %) 2073 (17.32%)
Genes annotated as TF (total, %) 320 (2.67%)
Genes annotated as MEROPS protease (total, %) 531 (4.44%)
Genes annotated as CAZyme (total, %) 379 (3.17%)
Secondary metabolism gene cluster 16
CEGMA completeness (%) 99.34
BUSCO2 completeness (fungi_odb9) Complete: 97.59% (Single-copy: 96.9%, Duplicated: 0.69%), Fragmented: 2.07%, Missing: 0.34%

© 2020 - Robin Ohm - Utrecht University - The Netherlands

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