© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Sequences in assembly | 13 |
|---|---|
| Total assembly length (Mbp) | 30.42 |
| Assembly GC content (%) | 46.5 |
| Assembly gaps (%) | 0.43 |
| L50 number (#) | 5 |
| N50 length (bp) | 2550681 |
| Genes | 11971 |
| Gene length (median) | 1444 |
| Transcript length (median) | 1134 |
| Exon length (median) | 119 |
| CDS length (median) | 1134 |
| Protein length (median) | 378 |
| Spliced genes (total, %) | 10658 (89.03%) |
| Exons per gene (median) | 5 |
| Intron length (median) | 54 |
| Introns per spliced gene (median) | 5 |
| Gene density (genes / Mbp) | 393.55 |
| Coding content of assembly (bp, %) | 16889748 (55.53%) |
| Proteins with internal stops (total, %) | 0 (0.0%) |
| Unique PFAM domains | 3736 |
| Genes with PFAM (total, %) | 7488 (62.55%) |
| Genes with GO (total, %) | 4491 (37.52%) |
| Genes with signalP (total, %) | 749 (6.26%) |
| Genes with TMHMM (total, %) | 2073 (17.32%) |
| Genes annotated as TF (total, %) | 317 (2.65%) |
| Genes annotated as MEROPS protease (total, %) | 531 (4.44%) |
| Genes annotated as CAZyme (total, %) | 379 (3.17%) |
| Secondary metabolism gene cluster | 15 |
| CEGMA completeness (%) | 99.34 |
| BUSCO2 completeness (fungi_odb9) | Complete: 97.59% (Single-copy: 96.9%, Duplicated: 0.69%), Fragmented: 2.07%, Missing: 0.34% |