Fungal Genomics

at Utrecht University

Genome Statistics

Sequences in assembly 16
Total assembly length (Mbp) 30.73
Assembly GC content (%) 46.53
Assembly gaps (%) 0.0
L50 number (#) 5
N50 length (bp) 2477729
Genes 12104
Gene length (median) 1447
Transcript length (median) 1140
Exon length (median) 119
CDS length (median) 1140
Protein length (median) 380
Spliced genes (total, %) 10663 (88.09%)
Exons per gene (median) 5
Intron length (median) 54
Introns per spliced gene (median) 5
Gene density (genes / Mbp) 393.84
Coding content of assembly (bp, %) 17278047 (56.22%)
Proteins with internal stops (total, %) 0 (0.0%)
Unique PFAM domains 3665
Genes with PFAM (total, %) 7408 (61.2%)
Genes with GO (total, %) 4782 (39.51%)
Genes with signalP (total, %) 765 (6.32%)
Genes with TMHMM (total, %) 2109 (17.42%)
Genes annotated as TF (total, %) 343 (2.83%)
Genes annotated as MEROPS protease (total, %) 531 (4.39%)
Genes annotated as CAZyme (total, %) 381 (3.15%)
Secondary metabolism gene cluster 16
CEGMA completeness (%) 99.34
BUSCO2 completeness (fungi_odb9) Complete: 97.93% (Single-copy: 97.24%, Duplicated: 0.69%), Fragmented: 1.72%, Missing: 0.34%

© 2020 - Robin Ohm - Utrecht University - The Netherlands

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