© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Sequences in assembly | 16 |
|---|---|
| Total assembly length (Mbp) | 30.73 |
| Assembly GC content (%) | 46.53 |
| Assembly gaps (%) | 0.0 |
| L50 number (#) | 5 |
| N50 length (bp) | 2477729 |
| Genes | 12104 |
| Gene length (median) | 1447 |
| Transcript length (median) | 1140 |
| Exon length (median) | 119 |
| CDS length (median) | 1140 |
| Protein length (median) | 380 |
| Spliced genes (total, %) | 10663 (88.09%) |
| Exons per gene (median) | 5 |
| Intron length (median) | 54 |
| Introns per spliced gene (median) | 5 |
| Gene density (genes / Mbp) | 393.84 |
| Coding content of assembly (bp, %) | 17278047 (56.22%) |
| Proteins with internal stops (total, %) | 0 (0.0%) |
| Unique PFAM domains | 3731 |
| Genes with PFAM (total, %) | 7601 (62.8%) |
| Genes with GO (total, %) | 4550 (37.59%) |
| Genes with signalP (total, %) | 765 (6.32%) |
| Genes with TMHMM (total, %) | 2109 (17.42%) |
| Genes annotated as TF (total, %) | 341 (2.82%) |
| Genes annotated as MEROPS protease (total, %) | 531 (4.39%) |
| Genes annotated as CAZyme (total, %) | 381 (3.15%) |
| Secondary metabolism gene cluster | 15 |
| CEGMA completeness (%) | 99.34 |
| BUSCO2 completeness (fungi_odb9) | Complete: 97.93% (Single-copy: 97.24%, Duplicated: 0.69%), Fragmented: 1.72%, Missing: 0.34% |