Fungal Genomics

at Utrecht University

Genome Statistics

Sequences in assembly 177
Total assembly length (Mbp) 29.3
Assembly GC content (%) 48.12
Assembly gaps (%) 0.0
L50 number (#) 11
N50 length (bp) 761036
Total repeats (#) 7551
Repetitive content (bp, %) 1663039 (5.68%)
Genes 10325
Gene length (median) 1376
Transcript length (median) 1212
Exon length (median) 227
CDS length (median) 1212
Protein length (median) 404
Spliced genes (total, %) 8268 (80.08%)
Exons per gene (median) 3
Intron length (median) 58
Introns per spliced gene (median) 2
Gene density (genes / Mbp) 352.37
Coding content of assembly (bp, %) 14938836 (50.98%)
Proteins with internal stops (total, %) 0 (0.0%)
Unique PFAM domains 4069
Genes with PFAM (total, %) 7582 (73.43%)
Genes with GO (total, %) 4853 (47.0%)
Genes with signalP (total, %) 730 (7.07%)
Genes with TMHMM (total, %) 2057 (19.92%)
Genes annotated as TF (total, %) 427 (4.14%)
Genes annotated as MEROPS protease (total, %) 324 (3.14%)
Genes annotated as CAZyme (total, %) 391 (3.79%)
Secondary metabolism gene cluster 32
CEGMA completeness (%) 99.56
BUSCO2 completeness (fungi_odb9) Complete: 99.66% (Single-copy: 99.31%, Duplicated: 0.34%), Fragmented: 0.0%, Missing: 0.34%

© 2023 - Robin Ohm - Utrecht University - The Netherlands

Built with Python Django and Wagtail