© 2023 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Sequences in assembly | 171 |
|---|---|
| Total assembly length (Mbp) | 38.51 |
| Assembly GC content (%) | 49.3 |
| Assembly gaps (%) | 0.0 |
| L50 number (#) | 6 |
| N50 length (bp) | 2296050 |
| Total repeats (#) | 10627 |
| Repetitive content (bp, %) | 732638 (1.9%) |
| Genes | 11326 |
| Gene length (median) | 1422 |
| Transcript length (median) | 1281 |
| Exon length (median) | 297 |
| CDS length (median) | 1278 |
| Protein length (median) | 426 |
| Spliced genes (total, %) | 8366 (73.87%) |
| Exons per gene (median) | 2 |
| Intron length (median) | 65 |
| Introns per spliced gene (median) | 2 |
| Gene density (genes / Mbp) | 294.09 |
| Coding content of assembly (bp, %) | 17783979 (46.18%) |
| Proteins with internal stops (total, %) | 0 (0.0%) |
| Unique PFAM domains | 4125 |
| Genes with PFAM (total, %) | 8661 (76.47%) |
| Genes with GO (total, %) | 5414 (47.8%) |
| Genes with signalP (total, %) | 1053 (9.3%) |
| Genes with TMHMM (total, %) | 2141 (18.9%) |
| Genes annotated as TF (total, %) | 487 (4.3%) |
| Genes annotated as MEROPS protease (total, %) | 477 (4.21%) |
| Genes annotated as CAZyme (total, %) | 456 (4.03%) |
| Secondary metabolism gene cluster | 54 |
| CEGMA completeness (%) | 98.91 |
| BUSCO2 completeness (fungi_odb9) | Complete: 99.66% (Single-copy: 99.31%, Duplicated: 0.34%), Fragmented: 0.34%, Missing: 0.0% |