Fungal Genomics

at Utrecht University

PFAM Domain


General information

PFAM domainPF17917
Short nameRT_RNaseH
Long nameRNase H-like domain found in reverse transcriptase
Proteins with at least one of this domain51
Total domain count51
More informationPFAM website

Proteins with this PFAM domain

Note: all PFAM domains are shown for these proteins
Short name Long name E-value Start End Name
protein ID PFAM
RhoplFPRL280|1042_2 PF17919 RT_RNaseH_2 RNase H-like domain found in reverse transcriptase 2.8E-12 135 234
PF17917 RT_RNaseH RNase H-like domain found in reverse transcriptase 3.2E-09 164 267
RhoplFPRL280|1106_1 PF00078 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) 5.0E-26 158 318
PF17919 RT_RNaseH_2 RNase H-like domain found in reverse transcriptase 5.0E-36 381 482
PF17917 RT_RNaseH RNase H-like domain found in reverse transcriptase 2.0E-38 406 512
PF17921 Integrase_H2C2 Integrase zinc binding domain 6.9E-15 628 683
RhoplFPRL280|1134_1 PF17919 RT_RNaseH_2 RNase H-like domain found in reverse transcriptase 1.4E-12 135 234
PF17917 RT_RNaseH RNase H-like domain found in reverse transcriptase 6.1E-10 164 267
RhoplFPRL280|1166_1 PF17919 RT_RNaseH_2 RNase H-like domain found in reverse transcriptase 1.4E-12 135 234
PF17917 RT_RNaseH RNase H-like domain found in reverse transcriptase 6.7E-10 164 267
RhoplFPRL280|1185_1 PF17919 RT_RNaseH_2 RNase H-like domain found in reverse transcriptase 5.6E-12 135 234
PF17917 RT_RNaseH RNase H-like domain found in reverse transcriptase 9.1E-10 164 267
RhoplFPRL280|1205_1 PF00078 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) 5.0E-27 124 284
PF17919 RT_RNaseH_2 RNase H-like domain found in reverse transcriptase 3.1E-36 347 447
PF17917 RT_RNaseH RNase H-like domain found in reverse transcriptase 2.5E-38 372 478
RhoplFPRL280|1292_1 PF17919 RT_RNaseH_2 RNase H-like domain found in reverse transcriptase 2.2E-12 135 234
PF17917 RT_RNaseH RNase H-like domain found in reverse transcriptase 1.8E-09 164 267
PF17921 Integrase_H2C2 Integrase zinc binding domain 3.9E-08 418 462
RhoplFPRL280|1294_1 PF17919 RT_RNaseH_2 RNase H-like domain found in reverse transcriptase 1.4E-12 135 234
PF17917 RT_RNaseH RNase H-like domain found in reverse transcriptase 6.1E-10 164 267
RhoplFPRL280|1310_1 PF17919 RT_RNaseH_2 RNase H-like domain found in reverse transcriptase 1.4E-12 135 234
PF17917 RT_RNaseH RNase H-like domain found in reverse transcriptase 6.1E-10 164 267
RhoplFPRL280|1321_1 PF17919 RT_RNaseH_2 RNase H-like domain found in reverse transcriptase 1.4E-12 135 234
PF17917 RT_RNaseH RNase H-like domain found in reverse transcriptase 6.1E-10 164 267
RhoplFPRL280|1390_1 PF17919 RT_RNaseH_2 RNase H-like domain found in reverse transcriptase 1.4E-12 135 234
PF17917 RT_RNaseH RNase H-like domain found in reverse transcriptase 6.1E-10 164 267
RhoplFPRL280|1438_1 PF17919 RT_RNaseH_2 RNase H-like domain found in reverse transcriptase 1.4E-12 142 241
PF17917 RT_RNaseH RNase H-like domain found in reverse transcriptase 7.0E-10 171 274
RhoplFPRL280|1482_1 PF17919 RT_RNaseH_2 RNase H-like domain found in reverse transcriptase 3.9E-11 135 234
PF17917 RT_RNaseH RNase H-like domain found in reverse transcriptase 1.4E-08 164 267
RhoplFPRL280|1505_1 PF17919 RT_RNaseH_2 RNase H-like domain found in reverse transcriptase 1.3E-12 128 227
PF17917 RT_RNaseH RNase H-like domain found in reverse transcriptase 1.0E-09 157 260
RhoplFPRL280|1513_1 PF17919 RT_RNaseH_2 RNase H-like domain found in reverse transcriptase 6.8E-12 135 234
PF17917 RT_RNaseH RNase H-like domain found in reverse transcriptase 1.0E-08 164 267
RhoplFPRL280|1544_1 PF17919 RT_RNaseH_2 RNase H-like domain found in reverse transcriptase 1.4E-12 135 234
PF17917 RT_RNaseH RNase H-like domain found in reverse transcriptase 6.7E-10 164 267
RhoplFPRL280|1562_1 PF17919 RT_RNaseH_2 RNase H-like domain found in reverse transcriptase 2.3E-12 135 234
PF17917 RT_RNaseH RNase H-like domain found in reverse transcriptase 5.6E-08 164 251
RhoplFPRL280|1600_1 PF17919 RT_RNaseH_2 RNase H-like domain found in reverse transcriptase 1.5E-12 135 234
PF17917 RT_RNaseH RNase H-like domain found in reverse transcriptase 6.7E-10 164 267
RhoplFPRL280|1656_1 PF17919 RT_RNaseH_2 RNase H-like domain found in reverse transcriptase 7.8E-13 71 171
PF17917 RT_RNaseH RNase H-like domain found in reverse transcriptase 3.7E-10 100 203
RhoplFPRL280|1665_1 PF17919 RT_RNaseH_2 RNase H-like domain found in reverse transcriptase 3.1E-12 108 207
PF17917 RT_RNaseH RNase H-like domain found in reverse transcriptase 1.2E-08 137 228
RhoplFPRL280|1745_1 PF17919 RT_RNaseH_2 RNase H-like domain found in reverse transcriptase 9.0E-13 71 168
PF17917 RT_RNaseH RNase H-like domain found in reverse transcriptase 7.0E-10 99 203
RhoplFPRL280|1772_1 PF17919 RT_RNaseH_2 RNase H-like domain found in reverse transcriptase 2.6E-12 14 113
PF17917 RT_RNaseH RNase H-like domain found in reverse transcriptase 2.5E-09 43 147
RhoplFPRL280|1801_1 PF17919 RT_RNaseH_2 RNase H-like domain found in reverse transcriptase 1.2E-12 116 215
PF17917 RT_RNaseH RNase H-like domain found in reverse transcriptase 5.2E-10 145 248
RhoplFPRL280|18_38 PF00098 zf-CCHC Zinc knuckle 6.7E-05 363 379
PF00078 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) 1.6E-14 969 1092
PF17919 RT_RNaseH_2 RNase H-like domain found in reverse transcriptase 4.4E-13 1158 1261
PF17917 RT_RNaseH RNase H-like domain found in reverse transcriptase 7.9E-22 1193 1292
PF17921 Integrase_H2C2 Integrase zinc binding domain 1.5E-15 1712 1767
RhoplFPRL280|219_3 PF00078 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) 1.6E-25 137 297
PF17919 RT_RNaseH_2 RNase H-like domain found in reverse transcriptase 1.5E-35 360 460
PF17917 RT_RNaseH RNase H-like domain found in reverse transcriptase 5.3E-38 385 491
RhoplFPRL280|512_1 PF00078 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) 3.8E-20 150 311
PF17919 RT_RNaseH_2 RNase H-like domain found in reverse transcriptase 1.5E-28 374 457
PF17917 RT_RNaseH RNase H-like domain found in reverse transcriptase 9.1E-17 399 457
RhoplFPRL280|557_2 PF17919 RT_RNaseH_2 RNase H-like domain found in reverse transcriptase 2.9E-18 132 230
PF17917 RT_RNaseH RNase H-like domain found in reverse transcriptase 5.2E-15 162 260
PF17921 Integrase_H2C2 Integrase zinc binding domain 2.8E-16 406 458
PF00665 rve Integrase core domain 6.4E-08 477 565
RhoplFPRL280|560_1 PF00078 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) 1.9E-24 205 365
PF17919 RT_RNaseH_2 RNase H-like domain found in reverse transcriptase 6.7E-34 428 528
PF17917 RT_RNaseH RNase H-like domain found in reverse transcriptase 9.2E-35 453 558
RhoplFPRL280|564_1 PF00692 dUTPase dUTPase 1.7E-22 2 90
PF00078 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) 1.9E-26 267 432
PF17919 RT_RNaseH_2 RNase H-like domain found in reverse transcriptase 2.3E-35 495 591
PF17917 RT_RNaseH RNase H-like domain found in reverse transcriptase 3.3E-35 520 626
PF17921 Integrase_H2C2 Integrase zinc binding domain 2.3E-17 726 783
RhoplFPRL280|608_1 PF13650 Asp_protease_2 Aspartyl protease 1.3E-05 1 80
PF08284 RVP_2 Retroviral aspartyl protease 9.2E-06 2 98
PF00078 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) 1.5E-23 252 409
PF17919 RT_RNaseH_2 RNase H-like domain found in reverse transcriptase 5.8E-35 475 575
PF17917 RT_RNaseH RNase H-like domain found in reverse transcriptase 1.2E-37 500 606
PF17921 Integrase_H2C2 Integrase zinc binding domain 9.9E-09 722 770
RhoplFPRL280|620_1 PF00098 zf-CCHC Zinc knuckle 1.2E-04 675 691
PF08284 RVP_2 Retroviral aspartyl protease 2.1E-04 1040 1150
PF00078 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) 1.4E-14 1302 1426
PF17919 RT_RNaseH_2 RNase H-like domain found in reverse transcriptase 4.8E-13 1492 1595
PF17917 RT_RNaseH RNase H-like domain found in reverse transcriptase 4.3E-22 1527 1626
PF17921 Integrase_H2C2 Integrase zinc binding domain 8.6E-15 1874 1926
RhoplFPRL280|681_1 PF00078 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) 1.3E-23 194 354
PF17919 RT_RNaseH_2 RNase H-like domain found in reverse transcriptase 6.8E-33 417 517
PF17917 RT_RNaseH RNase H-like domain found in reverse transcriptase 5.4E-30 442 538
RhoplFPRL280|693_4 PF17917 RT_RNaseH RNase H-like domain found in reverse transcriptase 1.3E-13 1 54
RhoplFPRL280|717_1 PF00078 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) 1.5E-24 205 361
PF17919 RT_RNaseH_2 RNase H-like domain found in reverse transcriptase 2.9E-35 428 528
PF17917 RT_RNaseH RNase H-like domain found in reverse transcriptase 1.4E-35 453 559
RhoplFPRL280|739_2 PF17919 RT_RNaseH_2 RNase H-like domain found in reverse transcriptase 4.7E-10 173 240
PF17917 RT_RNaseH RNase H-like domain found in reverse transcriptase 9.9E-14 174 270
RhoplFPRL280|759_1 PF00692 dUTPase dUTPase 4.4E-31 34 143
PF00078 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) 3.3E-27 319 485
PF17919 RT_RNaseH_2 RNase H-like domain found in reverse transcriptase 8.1E-35 548 644
PF17917 RT_RNaseH RNase H-like domain found in reverse transcriptase 1.9E-34 573 679
PF17921 Integrase_H2C2 Integrase zinc binding domain 1.0E-18 779 836
RhoplFPRL280|768_1 PF08284 RVP_2 Retroviral aspartyl protease 4.8E-06 2 98
PF00078 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) 2.5E-24 251 411
PF17919 RT_RNaseH_2 RNase H-like domain found in reverse transcriptase 3.8E-33 474 574
PF17917 RT_RNaseH RNase H-like domain found in reverse transcriptase 7.9E-35 499 605
PF17921 Integrase_H2C2 Integrase zinc binding domain 9.5E-18 721 777
RhoplFPRL280|784_1 PF17919 RT_RNaseH_2 RNase H-like domain found in reverse transcriptase 5.5E-09 831 930
PF17917 RT_RNaseH RNase H-like domain found in reverse transcriptase 2.0E-07 860 963
RhoplFPRL280|802_1 PF17919 RT_RNaseH_2 RNase H-like domain found in reverse transcriptase 1.0E-11 135 234
PF17917 RT_RNaseH RNase H-like domain found in reverse transcriptase 3.2E-09 164 267
PF17921 Integrase_H2C2 Integrase zinc binding domain 8.5E-16 421 473
RhoplFPRL280|805_1 PF08284 RVP_2 Retroviral aspartyl protease 1.0E-06 611 712
PF13650 Asp_protease_2 Aspartyl protease 2.8E-05 614 702
PF00078 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) 1.9E-13 872 996
PF17919 RT_RNaseH_2 RNase H-like domain found in reverse transcriptase 2.1E-12 1061 1164
PF17917 RT_RNaseH RNase H-like domain found in reverse transcriptase 8.4E-21 1095 1195
RhoplFPRL280|828_1 PF17917 RT_RNaseH RNase H-like domain found in reverse transcriptase 1.6E-10 1 54
PF17921 Integrase_H2C2 Integrase zinc binding domain 4.0E-20 170 226
RhoplFPRL280|837_1 PF08284 RVP_2 Retroviral aspartyl protease 3.3E-05 2 99
PF00078 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) 1.4E-23 252 412
PF17919 RT_RNaseH_2 RNase H-like domain found in reverse transcriptase 1.2E-35 475 575
PF17917 RT_RNaseH RNase H-like domain found in reverse transcriptase 1.0E-31 500 597
RhoplFPRL280|842_3 PF17917 RT_RNaseH RNase H-like domain found in reverse transcriptase 5.1E-15 1 54
RhoplFPRL280|861_2 PF17919 RT_RNaseH_2 RNase H-like domain found in reverse transcriptase 2.8E-11 137 237
PF17917 RT_RNaseH RNase H-like domain found in reverse transcriptase 7.2E-10 164 267
RhoplFPRL280|868_1 PF00078 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) 8.0E-26 252 412
PF17919 RT_RNaseH_2 RNase H-like domain found in reverse transcriptase 4.3E-34 475 575
PF17917 RT_RNaseH RNase H-like domain found in reverse transcriptase 4.3E-38 500 606
RhoplFPRL280|915_2 PF17917 RT_RNaseH RNase H-like domain found in reverse transcriptase 1.4E-14 1 54
PF17921 Integrase_H2C2 Integrase zinc binding domain 2.0E-21 170 226
RhoplFPRL280|931_1 PF08284 RVP_2 Retroviral aspartyl protease 7.6E-05 2 98
PF00078 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) 1.5E-25 246 406
PF17919 RT_RNaseH_2 RNase H-like domain found in reverse transcriptase 5.1E-34 469 569
PF17917 RT_RNaseH RNase H-like domain found in reverse transcriptase 1.2E-35 494 600
PF17921 Integrase_H2C2 Integrase zinc binding domain 1.0E-20 716 772
RhoplFPRL280|939_1 PF17919 RT_RNaseH_2 RNase H-like domain found in reverse transcriptase 6.3E-23 167 242
PF17917 RT_RNaseH RNase H-like domain found in reverse transcriptase 2.2E-30 169 264
RhoplFPRL280|946_2 PF17919 RT_RNaseH_2 RNase H-like domain found in reverse transcriptase 3.3E-12 71 171
PF17917 RT_RNaseH RNase H-like domain found in reverse transcriptase 3.8E-10 100 203
RhoplFPRL280|954_2 PF17917 RT_RNaseH RNase H-like domain found in reverse transcriptase 7.1E-14 1 54
RhoplFPRL280|972_1 PF17919 RT_RNaseH_2 RNase H-like domain found in reverse transcriptase 7.7E-12 135 234
PF17917 RT_RNaseH RNase H-like domain found in reverse transcriptase 7.8E-10 164 267

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