Fungal Genomics

at Utrecht University

PFAM Domain


General information

PFAM domainPF00271
Short nameHelicase_C
Long nameHelicase conserved C-terminal domain
Proteins with at least one of this domain69
Total domain count69
More informationPFAM website

Proteins with this PFAM domain

Note: all PFAM domains are shown for these proteins
Short name Long name E-value Start End Name
protein ID PFAM
RhoplFPRL280|10_33 PF00385 Chromo Chromo (CHRromatin Organisation MOdifier) domain 4.6E-14 114 165
PF04851 ResIII Type III restriction enzyme, res subunit 2.2E-07 213 366
PF00176 SNF2-rel_dom SNF2-related domain 2.4E-63 221 485
PF00271 Helicase_C Helicase conserved C-terminal domain 4.7E-19 512 622
PF18196 Cdh1_DBD_1 Chromodomain helicase DNA-binding domain 1 3.7E-07 835 913
PF13907 DUF4208 Domain of unknown function (DUF4208) 6.8E-22 1113 1207
RhoplFPRL280|111_3 PF08658 Rad54_N Rad54 N terminal 5.1E-46 18 199
PF04851 ResIII Type III restriction enzyme, res subunit 7.0E-05 222 401
PF00176 SNF2-rel_dom SNF2-related domain 5.3E-62 233 534
PF00271 Helicase_C Helicase conserved C-terminal domain 1.6E-15 582 688
RhoplFPRL280|115_6 PF00271 Helicase_C Helicase conserved C-terminal domain 6.1E-13 179 322
PF04408 HA2 Helicase associated domain (HA2) 1.2E-14 384 473
PF07717 OB_NTP_bind Oligonucleotide/oligosaccharide-binding (OB)-fold 2.8E-12 534 612
RhoplFPRL280|11_35 PF00270 DEAD DEAD/DEAH box helicase 4.5E-38 122 311
PF00271 Helicase_C Helicase conserved C-terminal domain 1.3E-24 395 492
PF08147 DBP10CT DBP10CT (NUC160) domain 1.6E-21 773 834
RhoplFPRL280|11_37 PF00270 DEAD DEAD/DEAH box helicase 7.0E-39 155 378
PF00271 Helicase_C Helicase conserved C-terminal domain 9.6E-16 533 615
PF13959 DUF4217 Domain of unknown function (DUF4217) 2.9E-20 679 739
RhoplFPRL280|11_79 PF04851 ResIII Type III restriction enzyme, res subunit 5.5E-10 374 543
PF00176 SNF2-rel_dom SNF2-related domain 5.9E-40 394 554
PF00271 Helicase_C Helicase conserved C-terminal domain 1.5E-18 707 819
RhoplFPRL280|130_1 PF04851 ResIII Type III restriction enzyme, res subunit 8.4E-09 144 303
PF00176 SNF2-rel_dom SNF2-related domain 2.7E-73 147 434
PF00271 Helicase_C Helicase conserved C-terminal domain 1.1E-17 456 569
PF09110 HAND HAND 2.2E-31 711 818
PF09111 SLIDE SLIDE 3.8E-43 877 989
RhoplFPRL280|137_6 PF00270 DEAD DEAD/DEAH box helicase 1.5E-37 146 321
PF04851 ResIII Type III restriction enzyme, res subunit 1.8E-06 161 313
PF00271 Helicase_C Helicase conserved C-terminal domain 6.3E-24 358 466
RhoplFPRL280|137_9 PF00270 DEAD DEAD/DEAH box helicase 3.0E-37 81 248
PF04851 ResIII Type III restriction enzyme, res subunit 1.1E-08 96 244
PF00271 Helicase_C Helicase conserved C-terminal domain 3.4E-24 288 395
RhoplFPRL280|147_6 PF00270 DEAD DEAD/DEAH box helicase 2.2E-33 92 257
PF00271 Helicase_C Helicase conserved C-terminal domain 1.4E-26 295 418
RhoplFPRL280|14_1 PF04851 ResIII Type III restriction enzyme, res subunit 8.6E-07 796 956
PF00176 SNF2-rel_dom SNF2-related domain 1.4E-62 803 1085
PF11496 HDA2-3 Class II histone deacetylase complex subunits 2 and 3 2.4E-15 1023 1254
PF00271 Helicase_C Helicase conserved C-terminal domain 2.4E-15 1110 1226
RhoplFPRL280|14_2 PF00176 SNF2-rel_dom SNF2-related domain 1.2E-21 292 474
PF00176 SNF2-rel_dom SNF2-related domain 2.3E-44 525 802
PF00271 Helicase_C Helicase conserved C-terminal domain 7.8E-13 1039 1134
RhoplFPRL280|14_50 PF00083 Sugar_tr Sugar (and other) transporter 7.4E-13 37 111
PF00270 DEAD DEAD/DEAH box helicase 6.0E-18 161 387
PF00271 Helicase_C Helicase conserved C-terminal domain 8.6E-08 565 613
RhoplFPRL280|15_62 PF00270 DEAD DEAD/DEAH box helicase 2.9E-44 21 184
PF04851 ResIII Type III restriction enzyme, res subunit 1.6E-05 34 179
PF00271 Helicase_C Helicase conserved C-terminal domain 1.8E-31 222 330
RhoplFPRL280|164_4 PF00270 DEAD DEAD/DEAH box helicase 4.9E-44 206 386
PF00271 Helicase_C Helicase conserved C-terminal domain 3.9E-26 422 529
RhoplFPRL280|164_7 PF00270 DEAD DEAD/DEAH box helicase 2.4E-21 60 229
PF00271 Helicase_C Helicase conserved C-terminal domain 2.0E-18 270 375
PF16124 RecQ_Zn_bind RecQ zinc-binding 7.9E-13 389 453
RhoplFPRL280|182_4 PF04851 ResIII Type III restriction enzyme, res subunit 1.4E-06 166 375
PF00176 SNF2-rel_dom SNF2-related domain 1.3E-71 184 510
PF00271 Helicase_C Helicase conserved C-terminal domain 4.0E-21 597 712
RhoplFPRL280|198_1 PF04851 ResIII Type III restriction enzyme, res subunit 1.7E-05 85 307
PF00176 SNF2-rel_dom SNF2-related domain 5.7E-18 106 449
PF00271 Helicase_C Helicase conserved C-terminal domain 8.2E-07 584 660
RhoplFPRL280|19_4 PF00270 DEAD DEAD/DEAH box helicase 6.2E-37 61 273
PF00271 Helicase_C Helicase conserved C-terminal domain 2.6E-21 315 436
RhoplFPRL280|1_119 PF04851 ResIII Type III restriction enzyme, res subunit 9.9E-20 28 200
PF00270 DEAD DEAD/DEAH box helicase 2.1E-15 31 200
PF00271 Helicase_C Helicase conserved C-terminal domain 1.0E-13 278 378
RhoplFPRL280|1_165 PF00035 dsrm Double-stranded RNA binding motif 3.4E-04 24 90
PF00035 dsrm Double-stranded RNA binding motif 2.2E-04 133 197
PF00270 DEAD DEAD/DEAH box helicase 4.9E-07 330 489
PF00271 Helicase_C Helicase conserved C-terminal domain 4.2E-14 598 729
PF04408 HA2 Helicase associated domain (HA2) 1.6E-15 795 868
RhoplFPRL280|1_172 PF00270 DEAD DEAD/DEAH box helicase 4.4E-46 224 396
PF00271 Helicase_C Helicase conserved C-terminal domain 4.2E-28 436 542
RhoplFPRL280|216_3 PF00270 DEAD DEAD/DEAH box helicase 4.3E-42 68 230
PF00271 Helicase_C Helicase conserved C-terminal domain 1.3E-26 269 375
RhoplFPRL280|21_25 PF00270 DEAD DEAD/DEAH box helicase 1.9E-07 574 723
PF00271 Helicase_C Helicase conserved C-terminal domain 3.8E-13 812 935
PF04408 HA2 Helicase associated domain (HA2) 1.3E-19 998 1076
PF07717 OB_NTP_bind Oligonucleotide/oligosaccharide-binding (OB)-fold 3.8E-13 1161 1261
RhoplFPRL280|21_26 PF00575 S1 S1 RNA binding domain 2.5E-06 210 272
PF00271 Helicase_C Helicase conserved C-terminal domain 3.2E-13 708 836
PF04408 HA2 Helicase associated domain (HA2) 6.9E-24 898 986
PF07717 OB_NTP_bind Oligonucleotide/oligosaccharide-binding (OB)-fold 3.0E-23 1044 1120
RhoplFPRL280|223_1 PF00270 DEAD DEAD/DEAH box helicase 3.0E-17 149 296
PF00271 Helicase_C Helicase conserved C-terminal domain 3.7E-07 437 544
PF13234 rRNA_proc-arch rRNA-processing arch domain 4.0E-85 598 869
PF08148 DSHCT DSHCT (NUC185) domain 1.1E-50 897 1061
RhoplFPRL280|235_1 PF08880 QLQ QLQ 3.0E-12 167 199
PF07529 HSA HSA domain 2.9E-19 448 518
PF04851 ResIII Type III restriction enzyme, res subunit 5.1E-10 624 783
PF00176 SNF2-rel_dom SNF2-related domain 4.9E-68 627 911
PF00271 Helicase_C Helicase conserved C-terminal domain 2.5E-13 935 1055
PF14619 SnAC Snf2-ATP coupling, chromatin remodelling complex 4.4E-11 1154 1220
PF00439 Bromodomain Bromodomain 3.7E-22 1353 1425
RhoplFPRL280|26_12 PF00176 SNF2-rel_dom SNF2-related domain 5.5E-68 8 416
PF04851 ResIII Type III restriction enzyme, res subunit 1.2E-06 11 210
PF11496 HDA2-3 Class II histone deacetylase complex subunits 2 and 3 6.5E-07 285 586
PF00271 Helicase_C Helicase conserved C-terminal domain 3.0E-16 444 557
RhoplFPRL280|26_19 PF00270 DEAD DEAD/DEAH box helicase 3.7E-51 126 297
PF04851 ResIII Type III restriction enzyme, res subunit 3.0E-07 142 290
PF00271 Helicase_C Helicase conserved C-terminal domain 2.4E-31 333 443
RhoplFPRL280|281_1 PF04851 ResIII Type III restriction enzyme, res subunit 1.0E-06 42 156
PF00176 SNF2-rel_dom SNF2-related domain 2.0E-59 54 348
PF00271 Helicase_C Helicase conserved C-terminal domain 6.1E-20 620 732
RhoplFPRL280|28_8 PF13625 Helicase_C_3 Helicase conserved C-terminal domain 5.2E-34 23 147
PF00176 SNF2-rel_dom SNF2-related domain 2.4E-12 270 435
PF04851 ResIII Type III restriction enzyme, res subunit 1.5E-16 271 426
PF16203 ERCC3_RAD25_C ERCC3/RAD25/XPB C-terminal helicase 1.2E-125 452 681
PF00271 Helicase_C Helicase conserved C-terminal domain 4.4E-11 499 602
RhoplFPRL280|29_19 PF00270 DEAD DEAD/DEAH box helicase 1.3E-48 28 209
PF04851 ResIII Type III restriction enzyme, res subunit 6.9E-06 48 203
PF00271 Helicase_C Helicase conserved C-terminal domain 7.7E-28 267 363
RhoplFPRL280|2_104 PF00271 Helicase_C Helicase conserved C-terminal domain 9.5E-14 941 1064
PF04408 HA2 Helicase associated domain (HA2) 2.0E-14 1132 1205
PF07717 OB_NTP_bind Oligonucleotide/oligosaccharide-binding (OB)-fold 6.6E-10 1311 1392
RhoplFPRL280|2_105 PF13892 DBINO DNA-binding domain 1.2E-49 9 140
PF04851 ResIII Type III restriction enzyme, res subunit 3.7E-07 268 435
PF00176 SNF2-rel_dom SNF2-related domain 1.6E-70 285 572
PF00271 Helicase_C Helicase conserved C-terminal domain 2.2E-15 855 967
RhoplFPRL280|2_34 PF00270 DEAD DEAD/DEAH box helicase 1.1E-45 46 217
PF00271 Helicase_C Helicase conserved C-terminal domain 3.3E-23 260 364
PF13959 DUF4217 Domain of unknown function (DUF4217) 4.8E-18 404 464
RhoplFPRL280|2_65 PF00270 DEAD DEAD/DEAH box helicase 3.7E-15 24 182
PF04851 ResIII Type III restriction enzyme, res subunit 2.0E-19 34 178
PF00271 Helicase_C Helicase conserved C-terminal domain 3.1E-19 393 500
RhoplFPRL280|312_5 PF00270 DEAD DEAD/DEAH box helicase 3.0E-06 108 273
PF00271 Helicase_C Helicase conserved C-terminal domain 5.5E-15 316 444
PF04408 HA2 Helicase associated domain (HA2) 1.9E-17 506 594
PF07717 OB_NTP_bind Oligonucleotide/oligosaccharide-binding (OB)-fold 3.0E-07 662 730
RhoplFPRL280|343_1 PF00270 DEAD DEAD/DEAH box helicase 6.4E-15 20 161
PF04851 ResIII Type III restriction enzyme, res subunit 3.3E-12 21 190
PF00271 Helicase_C Helicase conserved C-terminal domain 1.5E-13 402 519
PF03368 Dicer_dimer Dicer dimerisation domain 4.5E-25 588 695
PF00636 Ribonuclease_3 Ribonuclease III domain 3.9E-22 1025 1142
PF14622 Ribonucleas_3_3 Ribonuclease-III-like 2.9E-09 1202 1275
PF00636 Ribonuclease_3 Ribonuclease III domain 5.8E-16 1224 1374
RhoplFPRL280|344_5 PF00270 DEAD DEAD/DEAH box helicase 6.2E-09 80 229
PF00271 Helicase_C Helicase conserved C-terminal domain 3.9E-10 281 418
RhoplFPRL280|345_3 PF00271 Helicase_C Helicase conserved C-terminal domain 2.9E-09 224 332
PF12513 SUV3_C Mitochondrial degradasome RNA helicase subunit C terminal 7.6E-17 505 551
RhoplFPRL280|34_11 PF00270 DEAD DEAD/DEAH box helicase 2.5E-16 13 188
PF00271 Helicase_C Helicase conserved C-terminal domain 4.2E-13 244 346
PF16124 RecQ_Zn_bind RecQ zinc-binding 1.3E-11 359 429
RhoplFPRL280|35_6 PF17911 Ski2_N Ski2 N-terminal region 1.1E-34 56 179
PF00270 DEAD DEAD/DEAH box helicase 2.7E-19 243 391
PF04851 ResIII Type III restriction enzyme, res subunit 2.9E-06 256 389
PF00271 Helicase_C Helicase conserved C-terminal domain 5.5E-05 594 673
PF13234 rRNA_proc-arch rRNA-processing arch domain 5.9E-32 728 995
PF08148 DSHCT DSHCT (NUC185) domain 1.4E-51 1021 1187
RhoplFPRL280|35_7 PF08797 HIRAN HIRAN domain 3.9E-15 119 246
PF00176 SNF2-rel_dom SNF2-related domain 2.2E-58 390 788
PF00097 zf-C3HC4 Zinc finger, C3HC4 type (RING finger) 2.7E-06 842 886
PF00271 Helicase_C Helicase conserved C-terminal domain 6.1E-15 933 1048
RhoplFPRL280|37_7 PF00270 DEAD DEAD/DEAH box helicase 1.9E-20 33 189
PF04851 ResIII Type III restriction enzyme, res subunit 2.0E-06 35 169
PF00271 Helicase_C Helicase conserved C-terminal domain 1.9E-05 242 385
PF02889 Sec63 Sec63 Brl domain 1.3E-09 563 763
RhoplFPRL280|3_35 PF12054 DUF3535 Domain of unknown function (DUF3535) 1.5E-110 649 1056
PF00176 SNF2-rel_dom SNF2-related domain 4.6E-65 1287 1580
PF00271 Helicase_C Helicase conserved C-terminal domain 1.8E-16 1651 1752
RhoplFPRL280|3_72 PF00270 DEAD DEAD/DEAH box helicase 1.0E-12 16 178
PF04851 ResIII Type III restriction enzyme, res subunit 1.1E-13 23 177
PF00271 Helicase_C Helicase conserved C-terminal domain 1.0E-13 365 485
PF03368 Dicer_dimer Dicer dimerisation domain 2.2E-16 562 647
PF00636 Ribonuclease_3 Ribonuclease III domain 1.8E-19 967 1078
PF14622 Ribonucleas_3_3 Ribonuclease-III-like 1.2E-13 1131 1229
PF00636 Ribonuclease_3 Ribonuclease III domain 2.5E-19 1151 1262
RhoplFPRL280|44_43 PF00271 Helicase_C Helicase conserved C-terminal domain 5.6E-14 46 148
RhoplFPRL280|479_1 PF04851 ResIII Type III restriction enzyme, res subunit 5.0E-05 224 373
PF00270 DEAD DEAD/DEAH box helicase 6.9E-21 227 399
PF00271 Helicase_C Helicase conserved C-terminal domain 5.6E-08 460 567
PF09369 MZB MrfA Zn-binding domain 1.7E-14 839 909
RhoplFPRL280|48_4 PF00270 DEAD DEAD/DEAH box helicase 1.2E-07 78 229
PF00271 Helicase_C Helicase conserved C-terminal domain 9.8E-10 281 418
PF04408 HA2 Helicase associated domain (HA2) 1.4E-22 481 569
PF07717 OB_NTP_bind Oligonucleotide/oligosaccharide-binding (OB)-fold 4.3E-18 630 703
RhoplFPRL280|49_3 PF00176 SNF2-rel_dom SNF2-related domain 6.4E-56 141 432
PF00271 Helicase_C Helicase conserved C-terminal domain 1.5E-18 456 566
RhoplFPRL280|4_13 PF00270 DEAD DEAD/DEAH box helicase 9.1E-48 43 210
PF00271 Helicase_C Helicase conserved C-terminal domain 1.1E-29 247 353
RhoplFPRL280|4_134 PF00270 DEAD DEAD/DEAH box helicase 2.9E-43 48 210
PF00271 Helicase_C Helicase conserved C-terminal domain 3.5E-31 249 357
RhoplFPRL280|4_40 PF00270 DEAD DEAD/DEAH box helicase 3.2E-46 297 493
PF00271 Helicase_C Helicase conserved C-terminal domain 3.6E-28 530 639
RhoplFPRL280|4_70 PF00270 DEAD DEAD/DEAH box helicase 8.6E-51 376 548
PF00271 Helicase_C Helicase conserved C-terminal domain 2.0E-25 585 697
RhoplFPRL280|50_1 PF00271 Helicase_C Helicase conserved C-terminal domain 2.5E-14 640 767
PF04408 HA2 Helicase associated domain (HA2) 7.1E-21 829 918
PF07717 OB_NTP_bind Oligonucleotide/oligosaccharide-binding (OB)-fold 7.4E-19 978 1058
PF00069 Pkinase Protein kinase domain 4.4E-54 1566 1859
PF07714 PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase 2.3E-24 1571 1806
PF03328 HpcH_HpaI HpcH/HpaI aldolase/citrate lyase family 1.5E-25 2049 2293
RhoplFPRL280|50_4 PF00270 DEAD DEAD/DEAH box helicase 8.0E-07 359 524
PF00271 Helicase_C Helicase conserved C-terminal domain 1.3E-09 672 760
PF04408 HA2 Helicase associated domain (HA2) 2.3E-24 822 944
PF07717 OB_NTP_bind Oligonucleotide/oligosaccharide-binding (OB)-fold 7.5E-20 1019 1111
RhoplFPRL280|52_3 PF04851 ResIII Type III restriction enzyme, res subunit 2.2E-09 545 705
PF00176 SNF2-rel_dom SNF2-related domain 3.3E-46 559 739
PF00271 Helicase_C Helicase conserved C-terminal domain 5.3E-17 897 1009
RhoplFPRL280|55_8 PF00270 DEAD DEAD/DEAH box helicase 5.6E-18 27 106
PF00270 DEAD DEAD/DEAH box helicase 2.6E-17 154 279
PF00271 Helicase_C Helicase conserved C-terminal domain 1.5E-25 341 448
RhoplFPRL280|59_10 PF00270 DEAD DEAD/DEAH box helicase 1.6E-16 87 329
PF00271 Helicase_C Helicase conserved C-terminal domain 9.4E-08 412 518
RhoplFPRL280|5_120 PF00270 DEAD DEAD/DEAH box helicase 4.0E-42 102 270
PF00271 Helicase_C Helicase conserved C-terminal domain 2.7E-24 366 461
RhoplFPRL280|61_7 PF00270 DEAD DEAD/DEAH box helicase 1.6E-40 38 216
PF04851 ResIII Type III restriction enzyme, res subunit 1.0E-05 49 176
PF00271 Helicase_C Helicase conserved C-terminal domain 6.2E-28 252 452
RhoplFPRL280|65_4 PF00176 SNF2-rel_dom SNF2-related domain 7.3E-37 296 567
PF00271 Helicase_C Helicase conserved C-terminal domain 3.0E-12 628 733
PF14773 VIGSSK Helicase-associated putative binding domain, C-terminal 1.8E-04 866 899
RhoplFPRL280|67_9 PF00270 DEAD DEAD/DEAH box helicase 1.6E-37 191 430
PF04851 ResIII Type III restriction enzyme, res subunit 1.4E-08 215 352
PF00271 Helicase_C Helicase conserved C-terminal domain 5.6E-21 487 612
RhoplFPRL280|6_84 PF00176 SNF2-rel_dom SNF2-related domain 1.5E-55 112 434
PF00097 zf-C3HC4 Zinc finger, C3HC4 type (RING finger) 1.8E-05 455 496
PF00271 Helicase_C Helicase conserved C-terminal domain 1.0E-12 535 647
RhoplFPRL280|74_4 PF00270 DEAD DEAD/DEAH box helicase 2.3E-46 78 247
PF00271 Helicase_C Helicase conserved C-terminal domain 1.9E-22 286 395
PF13959 DUF4217 Domain of unknown function (DUF4217) 8.7E-23 437 497
RhoplFPRL280|7_30 PF00270 DEAD DEAD/DEAH box helicase 1.3E-45 194 381
PF00271 Helicase_C Helicase conserved C-terminal domain 9.2E-30 417 528
RhoplFPRL280|7_76 PF00270 DEAD DEAD/DEAH box helicase 6.2E-40 35 229
PF00271 Helicase_C Helicase conserved C-terminal domain 1.3E-18 291 405
PF13959 DUF4217 Domain of unknown function (DUF4217) 5.9E-18 453 497
RhoplFPRL280|87_12 PF00271 Helicase_C Helicase conserved C-terminal domain 4.9E-07 10 58
PF09110 HAND HAND 1.5E-20 166 256
PF09111 SLIDE SLIDE 5.1E-14 362 405
RhoplFPRL280|97_7 PF00270 DEAD DEAD/DEAH box helicase 1.4E-19 47 291
PF00271 Helicase_C Helicase conserved C-terminal domain 3.7E-11 351 495

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