Fungal Genomics

at Utrecht University

PFAM Domain


General information

PFAM domainPF00076
Short nameRRM_1
Long nameRNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Proteins with at least one of this domain62
Total domain count94
More informationPFAM website

Proteins with this PFAM domain

Note: all PFAM domains are shown for these proteins
Short name Long name E-value Start End Name
protein ID PFAM
RhoplFPRL280|101_10 PF00160 Pro_isomerase Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 7.5E-40 3 170
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2.9E-16 248 317
RhoplFPRL280|102_11 PF12353 eIF3g Eukaryotic translation initiation factor 3 subunit G 2.1E-44 22 144
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2.9E-17 206 272
RhoplFPRL280|104_3 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.5E-12 25 86
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8.3E-12 245 321
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2.2E-16 432 490
RhoplFPRL280|108_12 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.6E-15 125 180
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.8E-14 209 262
RhoplFPRL280|10_5 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 7.2E-07 165 247
PF04818 CID CID domain 1.9E-06 413 542
RhoplFPRL280|11_86 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9.8E-05 316 370
RhoplFPRL280|128_3 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.8E-08 301 355
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 7.6E-07 532 587
RhoplFPRL280|130_17 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2.4E-17 78 146
RhoplFPRL280|133_3 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 3.0E-06 23 94
PF13923 zf-C3HC4_2 Zinc finger, C3HC4 type (RING finger) 2.5E-07 492 523
PF00097 zf-C3HC4 Zinc finger, C3HC4 type (RING finger) 3.8E-06 493 523
PF13445 zf-RING_UBOX RING-type zinc-finger 2.6E-07 493 521
PF01485 IBR IBR domain, a half RING-finger domain 1.1E-09 567 622
PF01485 IBR IBR domain, a half RING-finger domain 4.8E-07 636 678
RhoplFPRL280|143_1 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2.2E-08 612 676
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 7.4E-11 686 748
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 7.1E-17 777 844
RhoplFPRL280|148_2 PF03169 OPT OPT oligopeptide transporter protein 3.8E-38 2 289
PF03169 OPT OPT oligopeptide transporter protein 1.2E-07 301 343
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2.7E-06 679 744
RhoplFPRL280|180_8 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 3.7E-10 97 153
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 7.0E-08 191 249
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4.7E-10 300 357
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 7.1E-09 398 458
RhoplFPRL280|182_8 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4.5E-15 1 59
PF14327 CSTF2_hinge Hinge domain of cleavage stimulation factor subunit 2 2.5E-26 119 198
PF14304 CSTF_C Transcription termination and cleavage factor C-terminal 1.8E-14 302 337
RhoplFPRL280|18_40 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2.4E-07 1057 1115
RhoplFPRL280|18_45 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 3.0E-07 254 302
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2.8E-15 483 547
RhoplFPRL280|18_47 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.2E-06 75 114
PF08662 eIF2A Eukaryotic translation initiation factor eIF2A 2.0E-35 411 637
RhoplFPRL280|192_3 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.2E-13 155 222
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 5.0E-15 278 346
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.9E-12 447 514
RhoplFPRL280|1_120 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 7.0E-08 244 315
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9.2E-21 349 419
PF15519 RBM39linker linker between RRM2 and RRM3 domains in RBM39 protein 1.2E-13 438 500
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.1E-07 515 559
RhoplFPRL280|21_15 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8.4E-08 46 115
PF13893 RRM_5 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.3E-06 194 266
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 5.9E-12 197 259
RhoplFPRL280|221_1 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9.1E-08 478 549
RhoplFPRL280|223_8 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 3.2E-15 46 118
RhoplFPRL280|226_4 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 5.3E-07 136 207
PF01424 R3H R3H domain 1.8E-10 329 386
RhoplFPRL280|254_11 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8.0E-22 5 75
RhoplFPRL280|26_24 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2.1E-13 71 137
RhoplFPRL280|272_2 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 3.9E-15 56 124
PF01926 MMR_HSR1 50S ribosome-binding GTPase 1.1E-07 246 313
RhoplFPRL280|28_48 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 7.0E-14 41 109
RhoplFPRL280|2_79 PF13893 RRM_5 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9.9E-05 15 97
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.8E-15 18 89
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.5E-18 109 179
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 3.3E-13 237 301
RhoplFPRL280|31_58 PF13893 RRM_5 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 3.3E-06 30 109
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 3.2E-13 36 104
RhoplFPRL280|356_2 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 7.2E-10 4 76
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2.1E-15 254 324
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 6.9E-08 435 498
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 5.3E-07 557 631
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 3.1E-13 658 725
RhoplFPRL280|372_4 PF14605 Nup35_RRM_2 Nup53/35/40-type RNA recognition motif 2.8E-06 5 56
PF08777 RRM_3 RNA binding motif 6.2E-05 6 57
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2.8E-08 8 65
RhoplFPRL280|37_38 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 5.6E-17 5 66
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 6.1E-11 97 161
RhoplFPRL280|38_12 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2.1E-11 93 157
RhoplFPRL280|3_109 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9.4E-10 442 494
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2.5E-12 568 629
PF00806 PUF Pumilio-family RNA binding repeat 1.3E-01 813 843
PF00806 PUF Pumilio-family RNA binding repeat 9.8E-01 848 878
PF00806 PUF Pumilio-family RNA binding repeat 1.1E-02 891 907
RhoplFPRL280|3_89 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 7.2E-12 14 84
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.3E-20 101 171
RhoplFPRL280|40_17 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.5E-18 255 323
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 7.9E-23 355 425
RhoplFPRL280|425_4 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 5.4E-07 87 141
RhoplFPRL280|426_4 PF16131 Torus Torus domain 4.7E-40 20 128
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9.4E-06 165 218
RhoplFPRL280|42_13 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.0E-13 126 188
PF00098 zf-CCHC Zinc knuckle 3.2E-08 207 223
RhoplFPRL280|46_30 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2.6E-14 8 62
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2.3E-14 90 139
RhoplFPRL280|47_39 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 5.3E-07 108 171
RhoplFPRL280|48_13 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.9E-12 103 171
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2.2E-04 256 311
RhoplFPRL280|4_142 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4.8E-13 31 99
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2.9E-11 233 305
RhoplFPRL280|4_167 PF13893 RRM_5 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2.5E-08 14 99
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2.4E-18 18 84
RhoplFPRL280|520_7 PF12220 U1snRNP70_N U1 small nuclear ribonucleoprotein of 70kDa MW N terminal 6.3E-27 5 109
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 5.5E-15 120 172
RhoplFPRL280|55_17 PF02136 NTF2 Nuclear transport factor 2 (NTF2) domain 3.9E-30 13 129
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9.6E-06 363 414
RhoplFPRL280|55_32 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2.7E-11 55 122
RhoplFPRL280|56_27 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4.1E-18 32 102
RhoplFPRL280|59_44 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 6.9E-17 84 153
RhoplFPRL280|5_145 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 3.1E-08 10 80
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.2E-05 177 245
RhoplFPRL280|5_28 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2.6E-14 83 152
RhoplFPRL280|5_89 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2.6E-07 111 177
RhoplFPRL280|66_30 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9.0E-14 5 75
RhoplFPRL280|67_23 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.1E-04 120 191
RhoplFPRL280|70_12 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4.3E-09 1 58
RhoplFPRL280|70_28 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2.4E-14 64 132
RhoplFPRL280|72_30 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 7.2E-12 36 111
RhoplFPRL280|72_34 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.9E-14 11 87
RhoplFPRL280|78_7 PF13893 RRM_5 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.1E-01 33 125
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 3.1E-15 49 118
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.5E-18 137 205
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 5.4E-20 230 298
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.4E-20 333 401
PF00658 PABP Poly-adenylate binding protein, unique domain 3.7E-24 604 664
RhoplFPRL280|7_57 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 3.8E-14 63 129
RhoplFPRL280|864_2 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2.9E-14 20 85
RhoplFPRL280|864_3 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2.5E-15 15 73
RhoplFPRL280|9_88 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2.8E-13 163 232

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