Fungal Genomics

at Utrecht University

PFAM Domain


General information

PFAM domainPF00004
Short nameAAA
Long nameATPase family associated with various cellular activities (AAA)
Proteins with at least one of this domain49
Total domain count58
More informationPFAM website

Proteins with this PFAM domain

Note: all PFAM domains are shown for these proteins
Short name Long name E-value Start End Name
protein ID PFAM
RhoplFPRL280|108_3 PF02190 LON_substr_bdg ATP-dependent protease La (LON) substrate-binding domain 3.3E-09 15 213
PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.7E-22 485 623
PF07728 AAA_5 AAA domain (dynein-related subfamily) 2.0E-09 485 619
PF05362 Lon_C Lon protease (S16) C-terminal proteolytic domain 1.0E-68 723 933
PF13541 ChlI Subunit ChlI of Mg-chelatase 2.5E-06 767 901
RhoplFPRL280|114_6 PF05496 RuvB_N Holliday junction DNA helicase RuvB P-loop domain 5.3E-13 116 238
PF00004 AAA ATPase family associated with various cellular activities (AAA) 4.4E-14 149 260
PF07728 AAA_5 AAA domain (dynein-related subfamily) 1.8E-07 149 243
PF00158 Sigma54_activat Sigma-54 interaction domain 3.4E-04 203 244
PF16193 AAA_assoc_2 AAA C-terminal domain 2.8E-17 287 357
PF12002 MgsA_C MgsA AAA+ ATPase C terminal 1.2E-52 358 496
RhoplFPRL280|115_2 PF00004 AAA ATPase family associated with various cellular activities (AAA) 2.8E-17 512 641
PF00004 AAA ATPase family associated with various cellular activities (AAA) 8.2E-44 785 918
RhoplFPRL280|132_7 PF00004 AAA ATPase family associated with various cellular activities (AAA) 2.3E-16 161 279
RhoplFPRL280|141_7 PF06068 TIP49 TIP49 P-loop domain 1.2E-158 31 385
PF05496 RuvB_N Holliday junction DNA helicase RuvB P-loop domain 3.6E-07 55 108
PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.3E-06 83 130
PF17856 TIP49_C TIP49 AAA-lid domain 2.2E-19 391 456
RhoplFPRL280|14_51 PF00004 AAA ATPase family associated with various cellular activities (AAA) 3.0E-42 144 276
PF17862 AAA_lid_3 AAA+ lid domain 3.6E-12 308 347
PF01434 Peptidase_M41 Peptidase family M41 9.1E-63 363 547
RhoplFPRL280|150_11 PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.1E-06 65 181
RhoplFPRL280|155_2 PF08740 BCS1_N BCS1 N terminal 6.6E-43 29 215
PF00004 AAA ATPase family associated with various cellular activities (AAA) 3.0E-12 251 403
RhoplFPRL280|170_1 PF07728 AAA_5 AAA domain (dynein-related subfamily) 5.0E-06 292 360
PF00004 AAA ATPase family associated with various cellular activities (AAA) 8.8E-41 293 429
PF17862 AAA_lid_3 AAA+ lid domain 5.5E-10 454 488
PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.5E-40 576 707
PF17862 AAA_lid_3 AAA+ lid domain 1.1E-12 731 765
RhoplFPRL280|171_1 PF07728 AAA_5 AAA domain (dynein-related subfamily) 8.2E-10 318 414
PF17867 AAA_lid_7 Midasin AAA lid domain 1.1E-18 480 601
PF07728 AAA_5 AAA domain (dynein-related subfamily) 7.1E-07 676 721
PF07728 AAA_5 AAA domain (dynein-related subfamily) 2.1E-07 842 928
PF17865 AAA_lid_5 Midasin AAA lid domain 3.4E-26 943 1046
PF07728 AAA_5 AAA domain (dynein-related subfamily) 7.1E-19 1112 1249
PF17867 AAA_lid_7 Midasin AAA lid domain 9.8E-13 1261 1354
PF07728 AAA_5 AAA domain (dynein-related subfamily) 7.3E-07 1407 1458
PF07728 AAA_5 AAA domain (dynein-related subfamily) 5.1E-15 1523 1611
PF07728 AAA_5 AAA domain (dynein-related subfamily) 4.9E-17 1792 1931
PF00004 AAA ATPase family associated with various cellular activities (AAA) 9.4E-05 1793 1827
PF07726 AAA_3 ATPase family associated with various cellular activities (AAA) 5.8E-08 1793 1932
PF17867 AAA_lid_7 Midasin AAA lid domain 4.0E-11 1943 2039
PF07728 AAA_5 AAA domain (dynein-related subfamily) 3.9E-10 2229 2325
RhoplFPRL280|179_10 PF05496 RuvB_N Holliday junction DNA helicase RuvB P-loop domain 5.0E-07 120 189
PF00004 AAA ATPase family associated with various cellular activities (AAA) 2.8E-38 121 249
PF17862 AAA_lid_3 AAA+ lid domain 1.2E-08 274 313
RhoplFPRL280|183_3 PF00004 AAA ATPase family associated with various cellular activities (AAA) 2.5E-15 438 555
RhoplFPRL280|193_3 PF02933 CDC48_2 Cell division protein 48 (CDC48), domain 2 2.3E-06 173 218
PF00004 AAA ATPase family associated with various cellular activities (AAA) 3.8E-39 313 453
PF17862 AAA_lid_3 AAA+ lid domain 3.0E-07 480 513
PF00004 AAA ATPase family associated with various cellular activities (AAA) 2.5E-12 594 706
RhoplFPRL280|1_168 PF02861 Clp_N Clp amino terminal domain, pathogenicity island component 8.5E-11 109 159
PF00004 AAA ATPase family associated with various cellular activities (AAA) 8.2E-13 217 354
PF17871 AAA_lid_9 AAA lid domain 1.9E-31 360 458
PF00158 Sigma54_activat Sigma-54 interaction domain 1.6E-05 614 735
PF07724 AAA_2 AAA domain (Cdc48 subfamily) 7.3E-46 617 781
PF07728 AAA_5 AAA domain (dynein-related subfamily) 2.3E-07 622 741
PF00004 AAA ATPase family associated with various cellular activities (AAA) 6.8E-08 623 741
PF10431 ClpB_D2-small C-terminal, D2-small domain, of ClpB protein 1.7E-23 787 867
RhoplFPRL280|206_1 PF00004 AAA ATPase family associated with various cellular activities (AAA) 8.0E-05 262 366
PF17871 AAA_lid_9 AAA lid domain 6.6E-07 366 424
PF07724 AAA_2 AAA domain (Cdc48 subfamily) 1.0E-18 562 721
PF10431 ClpB_D2-small C-terminal, D2-small domain, of ClpB protein 7.6E-10 730 807
RhoplFPRL280|206_2 PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.9E-09 36 160
PF17871 AAA_lid_9 AAA lid domain 6.8E-31 185 287
PF00158 Sigma54_activat Sigma-54 interaction domain 3.6E-07 431 540
PF07724 AAA_2 AAA domain (Cdc48 subfamily) 4.1E-40 435 598
PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.7E-09 440 564
PF07728 AAA_5 AAA domain (dynein-related subfamily) 3.6E-06 440 561
PF10431 ClpB_D2-small C-terminal, D2-small domain, of ClpB protein 1.6E-19 606 683
RhoplFPRL280|20_30 PF02359 CDC48_N Cell division protein 48 (CDC48), N-terminal domain 1.2E-20 29 109
PF02933 CDC48_2 Cell division protein 48 (CDC48), domain 2 2.1E-11 130 194
PF00004 AAA ATPase family associated with various cellular activities (AAA) 2.0E-47 245 374
PF07724 AAA_2 AAA domain (Cdc48 subfamily) 1.7E-07 245 340
PF07728 AAA_5 AAA domain (dynein-related subfamily) 2.3E-05 245 363
PF17862 AAA_lid_3 AAA+ lid domain 6.5E-13 397 436
PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.4E-46 518 651
PF17862 AAA_lid_3 AAA+ lid domain 3.5E-12 673 713
PF09336 Vps4_C Vps4 C terminal oligomerisation domain 1.1E-04 737 773
RhoplFPRL280|221_8 PF00004 AAA ATPase family associated with various cellular activities (AAA) 3.4E-11 59 176
PF01443 Viral_helicase1 Viral (Superfamily 1) RNA helicase 1.4E-04 59 140
PF13173 AAA_14 AAA domain 3.7E-07 59 154
PF13177 DNA_pol3_delta2 DNA polymerase III, delta subunit 3.8E-08 98 179
PF08542 Rep_fac_C Replication factor C C-terminal domain 1.6E-21 245 328
RhoplFPRL280|225_3 PF13191 AAA_16 AAA ATPase domain 2.3E-08 71 206
PF05729 NACHT NACHT domain 1.1E-07 77 235
PF00004 AAA ATPase family associated with various cellular activities (AAA) 2.5E-04 78 237
RhoplFPRL280|228_4 PF13401 AAA_22 AAA domain 4.9E-11 235 360
PF00004 AAA ATPase family associated with various cellular activities (AAA) 5.0E-08 237 363
RhoplFPRL280|231_4 PF04212 MIT MIT (microtubule interacting and transport) domain 9.6E-22 2 64
PF00004 AAA ATPase family associated with various cellular activities (AAA) 2.4E-41 163 292
PF17862 AAA_lid_3 AAA+ lid domain 2.2E-07 317 350
PF09336 Vps4_C Vps4 C terminal oligomerisation domain 5.5E-27 368 428
RhoplFPRL280|24_10 PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.5E-42 357 486
PF17862 AAA_lid_3 AAA+ lid domain 4.2E-09 514 552
PF01434 Peptidase_M41 Peptidase family M41 1.3E-57 569 748
RhoplFPRL280|24_6 PF00004 AAA ATPase family associated with various cellular activities (AAA) 4.0E-40 208 340
PF10436 BCDHK_Adom3 Mitochondrial branched-chain alpha-ketoacid dehydrogenase kinase 8.9E-35 455 612
PF02518 HATPase_c Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1.7E-06 657 751
RhoplFPRL280|265_1 PF02190 LON_substr_bdg ATP-dependent protease La (LON) substrate-binding domain 1.7E-34 111 352
PF00004 AAA ATPase family associated with various cellular activities (AAA) 2.3E-20 503 639
PF07728 AAA_5 AAA domain (dynein-related subfamily) 1.1E-06 503 636
PF05362 Lon_C Lon protease (S16) C-terminal proteolytic domain 5.1E-69 786 994
PF13541 ChlI Subunit ChlI of Mg-chelatase 1.2E-06 831 962
RhoplFPRL280|26_29 PF08740 BCS1_N BCS1 N terminal 1.3E-41 1 161
PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.1E-16 197 316
RhoplFPRL280|26_6 PF05496 RuvB_N Holliday junction DNA helicase RuvB P-loop domain 3.4E-08 148 271
PF00004 AAA ATPase family associated with various cellular activities (AAA) 2.8E-43 149 281
PF17862 AAA_lid_3 AAA+ lid domain 3.1E-08 307 344
PF00004 AAA ATPase family associated with various cellular activities (AAA) 2.2E-47 496 625
PF17862 AAA_lid_3 AAA+ lid domain 9.2E-10 665 691
RhoplFPRL280|2_132 PF00004 AAA ATPase family associated with various cellular activities (AAA) 4.4E-05 12 51
PF13238 AAA_18 AAA domain 1.5E-29 12 133
PF13207 AAA_17 AAA domain 1.9E-06 15 117
RhoplFPRL280|3_145 PF03215 Rad17 Rad17 P-loop domain 2.2E-07 20 164
PF13177 DNA_pol3_delta2 DNA polymerase III, delta subunit 2.3E-09 39 190
PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.1E-14 58 188
PF08542 Rep_fac_C Replication factor C C-terminal domain 8.5E-14 288 356
RhoplFPRL280|417_2 PF00004 AAA ATPase family associated with various cellular activities (AAA) 4.1E-11 39 139
PF17871 AAA_lid_9 AAA lid domain 5.6E-33 178 275
PF07724 AAA_2 AAA domain (Cdc48 subfamily) 1.9E-44 437 605
PF00158 Sigma54_activat Sigma-54 interaction domain 1.2E-07 440 559
PF07728 AAA_5 AAA domain (dynein-related subfamily) 5.3E-09 442 553
PF00004 AAA ATPase family associated with various cellular activities (AAA) 9.0E-05 443 561
PF10431 ClpB_D2-small C-terminal, D2-small domain, of ClpB protein 1.8E-20 612 692
RhoplFPRL280|437_2 PF16450 Prot_ATP_ID_OB Proteasomal ATPase OB C-terminal domain 3.0E-10 112 166
PF00004 AAA ATPase family associated with various cellular activities (AAA) 4.5E-41 225 358
PF17862 AAA_lid_3 AAA+ lid domain 2.5E-09 380 422
RhoplFPRL280|46_1 PF00004 AAA ATPase family associated with various cellular activities (AAA) 4.8E-42 463 598
PF17862 AAA_lid_3 AAA+ lid domain 7.1E-07 627 661
RhoplFPRL280|492_4 PF13177 DNA_pol3_delta2 DNA polymerase III, delta subunit 2.9E-10 37 185
PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.8E-05 38 179
RhoplFPRL280|4_119 PF13401 AAA_22 AAA domain 3.9E-06 175 263
PF00004 AAA ATPase family associated with various cellular activities (AAA) 4.0E-30 177 322
RhoplFPRL280|4_35 PF00004 AAA ATPase family associated with various cellular activities (AAA) 6.6E-35 747 879
PF17862 AAA_lid_3 AAA+ lid domain 7.6E-07 909 942
RhoplFPRL280|51_1 PF13087 AAA_12 AAA domain 2.0E-25 541 675
PF00004 AAA ATPase family associated with various cellular activities (AAA) 3.9E-12 1000 1108
RhoplFPRL280|5_122 PF00004 AAA ATPase family associated with various cellular activities (AAA) 6.8E-21 240 358
RhoplFPRL280|5_90 PF00004 AAA ATPase family associated with various cellular activities (AAA) 3.0E-18 208 327
RhoplFPRL280|61_4 PF01426 BAH BAH domain 3.2E-08 109 239
PF13191 AAA_16 AAA ATPase domain 1.2E-08 444 590
PF13401 AAA_22 AAA domain 4.8E-06 466 588
PF00004 AAA ATPase family associated with various cellular activities (AAA) 2.1E-14 470 622
PF17872 AAA_lid_10 AAA lid domain 2.8E-05 660 693
RhoplFPRL280|64_16 PF16450 Prot_ATP_ID_OB Proteasomal ATPase OB C-terminal domain 4.9E-08 67 122
PF07728 AAA_5 AAA domain (dynein-related subfamily) 8.7E-06 179 250
PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.0E-43 180 313
PF07724 AAA_2 AAA domain (Cdc48 subfamily) 5.3E-08 180 291
PF17862 AAA_lid_3 AAA+ lid domain 7.1E-11 337 379
RhoplFPRL280|6_15 PF07724 AAA_2 AAA domain (Cdc48 subfamily) 5.8E-36 149 381
PF07728 AAA_5 AAA domain (dynein-related subfamily) 2.0E-06 151 229
PF00004 AAA ATPase family associated with various cellular activities (AAA) 6.4E-13 152 260
PF10431 ClpB_D2-small C-terminal, D2-small domain, of ClpB protein 1.4E-06 388 462
RhoplFPRL280|72_10 PF16450 Prot_ATP_ID_OB Proteasomal ATPase OB C-terminal domain 4.8E-10 83 138
PF05673 DUF815 Protein of unknown function (DUF815) 8.6E-06 155 261
PF07728 AAA_5 AAA domain (dynein-related subfamily) 1.5E-06 195 317
PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.3E-43 196 329
PF07724 AAA_2 AAA domain (Cdc48 subfamily) 3.8E-07 196 289
RhoplFPRL280|75_3 PF09262 PEX-1N Peroxisome biogenesis factor 1, N-terminal 1.0E-24 119 196
PF00004 AAA ATPase family associated with various cellular activities (AAA) 2.2E-09 456 593
PF00004 AAA ATPase family associated with various cellular activities (AAA) 2.9E-43 740 866
PF17862 AAA_lid_3 AAA+ lid domain 1.5E-09 904 938
RhoplFPRL280|76_16 PF16450 Prot_ATP_ID_OB Proteasomal ATPase OB C-terminal domain 1.8E-09 57 112
PF07728 AAA_5 AAA domain (dynein-related subfamily) 4.0E-06 169 291
PF00004 AAA ATPase family associated with various cellular activities (AAA) 3.1E-42 170 303
PF17862 AAA_lid_3 AAA+ lid domain 8.3E-12 326 368
RhoplFPRL280|76_17 PF03215 Rad17 Rad17 P-loop domain 1.8E-08 26 101
PF05673 DUF815 Protein of unknown function (DUF815) 1.7E-05 29 166
PF13177 DNA_pol3_delta2 DNA polymerase III, delta subunit 3.7E-11 49 187
PF00004 AAA ATPase family associated with various cellular activities (AAA) 4.9E-17 67 185
PF13604 AAA_30 AAA domain 2.4E-06 68 161
PF08542 Rep_fac_C Replication factor C C-terminal domain 1.9E-20 252 337
RhoplFPRL280|79_13 PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.7E-17 52 183
RhoplFPRL280|79_3 PF08740 BCS1_N BCS1 N terminal 1.0E-43 27 203
PF00004 AAA ATPase family associated with various cellular activities (AAA) 2.2E-14 239 381
RhoplFPRL280|89_18 PF00004 AAA ATPase family associated with various cellular activities (AAA) 6.4E-15 9 139
RhoplFPRL280|8_83 PF06068 TIP49 TIP49 P-loop domain 3.2E-101 1 249
PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.6E-05 28 78
PF06068 TIP49 TIP49 P-loop domain 1.6E-35 269 342
PF17856 TIP49_C TIP49 AAA-lid domain 5.4E-19 348 413
RhoplFPRL280|8_9 PF16450 Prot_ATP_ID_OB Proteasomal ATPase OB C-terminal domain 1.7E-17 77 151
PF00004 AAA ATPase family associated with various cellular activities (AAA) 2.2E-40 210 342
PF17862 AAA_lid_3 AAA+ lid domain 1.2E-10 363 405

© 2023 - Robin Ohm - Utrecht University - The Netherlands

Built with Python Django and Wagtail