© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Sequences in assembly | 928 |
|---|---|
| Total assembly length (Mbp) | 40.62 |
| Assembly GC content (%) | 58.33 |
| Assembly gaps (%) | 0.02 |
| L50 number (#) | 25 |
| N50 length (bp) | 470782 |
| Total repeats (#) | 19372 |
| Repetitive content (bp, %) | 1621303 (3.99%) |
| Genes | 14434 |
| Gene length (median) | 1489 |
| Transcript length (median) | 1296 |
| Exon length (median) | 288 |
| CDS length (median) | 1293 |
| Protein length (median) | 431 |
| Spliced genes (total, %) | 10853 (75.19%) |
| Exons per gene (median) | 3 |
| Intron length (median) | 65 |
| Introns per spliced gene (median) | 2 |
| Gene density (genes / Mbp) | 355.36 |
| Coding content of assembly (bp, %) | 23597817 (58.1%) |
| Proteins with internal stops (total, %) | 0 (0.0%) |
| Unique PFAM domains | 4129 |
| Genes with PFAM (total, %) | 8386 (58.1%) |
| Genes with GO (total, %) | 5360 (37.13%) |
| Genes with signalP (total, %) | 1259 (8.72%) |
| Genes with TMHMM (total, %) | 2543 (17.62%) |
| Genes annotated as TF (total, %) | 497 (3.44%) |
| Genes annotated as MEROPS protease (total, %) | 474 (3.28%) |
| Genes annotated as CAZyme (total, %) | 454 (3.15%) |
| Secondary metabolism gene cluster | 32 |
| CEGMA completeness (%) | 99.13 |
| BUSCO2 completeness (fungi_odb9) | Complete: 98.62% (Single-copy: 97.93%, Duplicated: 0.69%), Fragmented: 0.69%, Missing: 0.69% |