© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| PFAM domain | Count | Short name | Long name |
|---|---|---|---|
| PF00001 | 1 | 7tm_1 | 7 transmembrane receptor (rhodopsin family) |
| PF00002 | 6 | 7tm_2 | 7 transmembrane receptor (Secretin family) |
| PF00004 | 63 | AAA | ATPase family associated with various cellular activities (AAA) |
| PF00005 | 121 | ABC_tran | ABC transporter |
| PF00006 | 4 | ATP-synt_ab | ATP synthase alpha/beta family, nucleotide-binding domain |
| PF00009 | 16 | GTP_EFTU | Elongation factor Tu GTP binding domain |
| PF00010 | 11 | HLH | Helix-loop-helix DNA-binding domain |
| PF00011 | 5 | HSP20 | Hsp20/alpha crystallin family |
| PF00012 | 23 | HSP70 | Hsp70 protein |
| PF00013 | 19 | KH_1 | KH domain |
| PF00017 | 1 | SH2 | SH2 domain |
| PF00018 | 21 | SH3_1 | SH3 domain |
| PF00022 | 11 | Actin | Actin |
| PF00023 | 200 | Ank | Ankyrin repeat |
| PF00024 | 1 | PAN_1 | PAN domain |
| PF00025 | 31 | Arf | ADP-ribosylation factor family |
| PF00026 | 25 | Asp | Eukaryotic aspartyl protease |
| PF00027 | 6 | cNMP_binding | Cyclic nucleotide-binding domain |
| PF00034 | 1 | Cytochrom_C | Cytochrome c |
| PF00036 | 12 | EF-hand_1 | EF hand |
| PF00037 | 2 | Fer4 | 4Fe-4S binding domain |
| PF00042 | 3 | Globin | Globin |
| PF00043 | 11 | GST_C | Glutathione S-transferase, C-terminal domain |
| PF00044 | 1 | Gp_dh_N | Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain |
| PF00046 | 9 | Homeodomain | Homeodomain |
| PF00056 | 3 | Ldh_1_N | lactate/malate dehydrogenase, NAD binding domain |
| PF00063 | 4 | Myosin_head | Myosin head (motor domain) |
| PF00067 | 109 | p450 | Cytochrome P450 |
| PF00069 | 152 | Pkinase | Protein kinase domain |
| PF00070 | 18 | Pyr_redox | Pyridine nucleotide-disulphide oxidoreductase |
| PF00071 | 43 | Ras | Ras family |
| PF00072 | 18 | Response_reg | Response regulator receiver domain |
| PF00075 | 19 | RNase_H | RNase H |
| PF00076 | 94 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) |
| PF00078 | 30 | RVT_1 | Reverse transcriptase (RNA-dependent DNA polymerase) |
| PF00080 | 1 | Sod_Cu | Copper/zinc superoxide dismutase (SODC) |
| PF00081 | 2 | Sod_Fe_N | Iron/manganese superoxide dismutases, alpha-hairpin domain |
| PF00082 | 38 | Peptidase_S8 | Subtilase family |
| PF00083 | 194 | Sugar_tr | Sugar (and other) transporter |
| PF00085 | 16 | Thioredoxin | Thioredoxin |
| PF00089 | 5 | Trypsin | Trypsin |
| PF00091 | 4 | Tubulin | Tubulin/FtsZ family, GTPase domain |
| PF00092 | 6 | VWA | von Willebrand factor type A domain |
| PF00096 | 73 | zf-C2H2 | Zinc finger, C2H2 type |
| PF00097 | 35 | zf-C3HC4 | Zinc finger, C3HC4 type (RING finger) |
| PF00098 | 26 | zf-CCHC | Zinc knuckle |
| PF00102 | 4 | Y_phosphatase | Protein-tyrosine phosphatase |
| PF00106 | 145 | adh_short | short chain dehydrogenase |
| PF00107 | 56 | ADH_zinc_N | Zinc-binding dehydrogenase |
| PF00108 | 6 | Thiolase_N | Thiolase, N-terminal domain |
| PF00109 | 17 | ketoacyl-synt | Beta-ketoacyl synthase, N-terminal domain |
| PF00111 | 4 | Fer2 | 2Fe-2S iron-sulfur cluster binding domain |
| PF00113 | 1 | Enolase_C | Enolase, C-terminal TIM barrel domain |
| PF00117 | 11 | GATase | Glutamine amidotransferase class-I |
| PF00118 | 10 | Cpn60_TCP1 | TCP-1/cpn60 chaperonin family |
| PF00120 | 4 | Gln-synt_C | Glutamine synthetase, catalytic domain |
| PF00121 | 2 | TIM | Triosephosphate isomerase |
| PF00122 | 41 | E1-E2_ATPase | E1-E2 ATPase |
| PF00125 | 8 | Histone | Core histone H2A/H2B/H3/H4 |
| PF00128 | 8 | Alpha-amylase | Alpha amylase, catalytic domain |
| PF00130 | 1 | C1_1 | Phorbol esters/diacylglycerol binding domain (C1 domain) |
| PF00132 | 6 | Hexapep | Bacterial transferase hexapeptide (six repeats) |
| PF00133 | 11 | tRNA-synt_1 | tRNA synthetases class I (I, L, M and V) |
| PF00134 | 9 | Cyclin_N | Cyclin, N-terminal domain |
| PF00135 | 25 | COesterase | Carboxylesterase family |
| PF00136 | 4 | DNA_pol_B | DNA polymerase family B |
| PF00137 | 9 | ATP-synt_C | ATP synthase subunit C |
| PF00141 | 5 | peroxidase | Peroxidase |
| PF00144 | 22 | Beta-lactamase | Beta-lactamase |
| PF00145 | 4 | DNA_methylase | C-5 cytosine-specific DNA methylase |
| PF00149 | 33 | Metallophos | Calcineurin-like phosphoesterase |
| PF00150 | 11 | Cellulase | Cellulase (glycosyl hydrolase family 5) |
| PF00152 | 8 | tRNA-synt_2 | tRNA synthetases class II (D, K and N) |
| PF00153 | 114 | Mito_carr | Mitochondrial carrier protein |
| PF00154 | 1 | RecA | recA bacterial DNA recombination protein |
| PF00155 | 31 | Aminotran_1_2 | Aminotransferase class I and II |
| PF00156 | 5 | Pribosyltran | Phosphoribosyl transferase domain |
| PF00158 | 1 | Sigma54_activat | Sigma-54 interaction domain |
| PF00160 | 9 | Pro_isomerase | Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD |
| PF00162 | 1 | PGK | Phosphoglycerate kinase |
| PF00163 | 2 | Ribosomal_S4 | Ribosomal protein S4/S9 N-terminal domain |
| PF00164 | 3 | Ribosom_S12_S23 | Ribosomal protein S12/S23 |
| PF00166 | 1 | Cpn10 | Chaperonin 10 Kd subunit |
| PF00168 | 18 | C2 | C2 domain |
| PF00169 | 11 | PH | PH domain |
| PF00170 | 13 | bZIP_1 | bZIP transcription factor |
| PF00171 | 26 | Aldedh | Aldehyde dehydrogenase family |
| PF00172 | 221 | Zn_clus | Fungal Zn(2)-Cys(6) binuclear cluster domain |
| PF00173 | 23 | Cyt-b5 | Cytochrome b5-like Heme/Steroid binding domain |
| PF00174 | 5 | Oxidored_molyb | Oxidoreductase molybdopterin binding domain |
| PF00175 | 21 | NAD_binding_1 | Oxidoreductase NAD-binding domain |
| PF00176 | 24 | SNF2-rel_dom | SNF2-related domain |
| PF00177 | 2 | Ribosomal_S7 | Ribosomal protein S7p/S5e |
| PF00179 | 21 | UQ_con | Ubiquitin-conjugating enzyme |
| PF00180 | 8 | Iso_dh | Isocitrate/isopropylmalate dehydrogenase |
| PF00181 | 2 | Ribosomal_L2 | Ribosomal Proteins L2, RNA binding domain |
| PF00183 | 1 | HSP90 | Hsp90 protein |
| PF00185 | 2 | OTCace | Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain |
| PF00186 | 2 | DHFR_1 | Dihydrofolate reductase |
| PF00187 | 5 | Chitin_bind_1 | Chitin recognition protein |
| PF00188 | 5 | CAP | Cysteine-rich secretory protein family |
| PF00189 | 1 | Ribosomal_S3_C | Ribosomal protein S3, C-terminal domain |
| PF00190 | 10 | Cupin_1 | Cupin |
| PF00191 | 8 | Annexin | Annexin |
| PF00194 | 1 | Carb_anhydrase | Eukaryotic-type carbonic anhydrase |
| PF00195 | 1 | Chal_sti_synt_N | Chalcone and stilbene synthases, N-terminal domain |
| PF00196 | 2 | GerE | Bacterial regulatory proteins, luxR family |
| PF00198 | 4 | 2-oxoacid_dh | 2-oxoacid dehydrogenases acyltransferase (catalytic domain) |
| PF00199 | 3 | Catalase | Catalase |
| PF00200 | 1 | Disintegrin | Disintegrin |
| PF00201 | 8 | UDPGT | UDP-glucoronosyl and UDP-glucosyl transferase |
| PF00202 | 12 | Aminotran_3 | Aminotransferase class-III |
| PF00203 | 2 | Ribosomal_S19 | Ribosomal protein S19 |
| PF00204 | 1 | DNA_gyraseB | DNA gyrase B |
| PF00205 | 5 | TPP_enzyme_M | Thiamine pyrophosphate enzyme, central domain |
| PF00206 | 3 | Lyase_1 | Lyase |
| PF00208 | 2 | ELFV_dehydrog | Glutamate/Leucine/Phenylalanine/Valine dehydrogenase |
| PF00209 | 3 | SNF | Sodium:neurotransmitter symporter family |
| PF00211 | 1 | Guanylate_cyc | Adenylate and Guanylate cyclase catalytic domain |
| PF00213 | 1 | OSCP | ATP synthase delta (OSCP) subunit |
| PF00215 | 1 | OMPdecase | Orotidine 5'-phosphate decarboxylase / HUMPS family |
| PF00218 | 1 | IGPS | Indole-3-glycerol phosphate synthase |
| PF00221 | 2 | Lyase_aromatic | Aromatic amino acid lyase |
| PF00224 | 1 | PK | Pyruvate kinase, barrel domain |
| PF00225 | 13 | Kinesin | Kinesin motor domain |
| PF00226 | 26 | DnaJ | DnaJ domain |
| PF00227 | 16 | Proteasome | Proteasome subunit |
| PF00230 | 4 | MIP | Major intrinsic protein |
| PF00231 | 2 | ATP-synt | ATP synthase |
| PF00232 | 3 | Glyco_hydro_1 | Glycosyl hydrolase family 1 |
| PF00233 | 1 | PDEase_I | 3'5'-cyclic nucleotide phosphodiesterase |
| PF00235 | 1 | Profilin | Profilin |
| PF00237 | 2 | Ribosomal_L22 | Ribosomal protein L22p/L17e |
| PF00238 | 2 | Ribosomal_L14 | Ribosomal protein L14p/L23e |
| PF00240 | 12 | ubiquitin | Ubiquitin family |
| PF00241 | 7 | Cofilin_ADF | Cofilin/tropomyosin-type actin-binding protein |
| PF00244 | 3 | 14-3-3 | 14-3-3 protein |
| PF00245 | 2 | Alk_phosphatase | Alkaline phosphatase |
| PF00246 | 3 | Peptidase_M14 | Zinc carboxypeptidase |
| PF00248 | 26 | Aldo_ket_red | Aldo/keto reductase family |
| PF00249 | 16 | Myb_DNA-binding | Myb-like DNA-binding domain |
| PF00250 | 4 | Forkhead | Forkhead domain |
| PF00251 | 4 | Glyco_hydro_32N | Glycosyl hydrolases family 32 N-terminal domain |
| PF00252 | 2 | Ribosomal_L16 | Ribosomal protein L16p/L10e |
| PF00253 | 2 | Ribosomal_S14 | Ribosomal protein S14p/S29e |
| PF00254 | 3 | FKBP_C | FKBP-type peptidyl-prolyl cis-trans isomerase |
| PF00255 | 1 | GSHPx | Glutathione peroxidase |
| PF00258 | 6 | Flavodoxin_1 | Flavodoxin |
| PF00262 | 1 | Calreticulin | Calreticulin family |
| PF00264 | 7 | Tyrosinase | Common central domain of tyrosinase |
| PF00266 | 12 | Aminotran_5 | Aminotransferase class-V |
| PF00268 | 1 | Ribonuc_red_sm | Ribonucleotide reductase, small chain |
| PF00270 | 50 | DEAD | DEAD/DEAH box helicase |
| PF00271 | 74 | Helicase_C | Helicase conserved C-terminal domain |
| PF00275 | 1 | EPSP_synthase | EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) |
| PF00276 | 2 | Ribosomal_L23 | Ribosomal protein L23 |
| PF00278 | 1 | Orn_DAP_Arg_deC | Pyridoxal-dependent decarboxylase, C-terminal sheet domain |
| PF00281 | 2 | Ribosomal_L5 | Ribosomal protein L5 |
| PF00282 | 8 | Pyridoxal_deC | Pyridoxal-dependent decarboxylase conserved domain |
| PF00285 | 3 | Citrate_synt | Citrate synthase, C-terminal domain |
| PF00288 | 5 | GHMP_kinases_N | GHMP kinases N terminal domain |
| PF00289 | 5 | Biotin_carb_N | Biotin carboxylase, N-terminal domain |
| PF00290 | 1 | Trp_syntA | Tryptophan synthase alpha chain |
| PF00291 | 14 | PALP | Pyridoxal-phosphate dependent enzyme |
| PF00293 | 18 | NUDIX | NUDIX domain |
| PF00294 | 8 | PfkB | pfkB family carbohydrate kinase |
| PF00295 | 3 | Glyco_hydro_28 | Glycosyl hydrolases family 28 |
| PF00296 | 2 | Bac_luciferase | Luciferase-like monooxygenase |
| PF00297 | 2 | Ribosomal_L3 | Ribosomal protein L3 |
| PF00298 | 2 | Ribosomal_L11 | Ribosomal protein L11, RNA binding domain |
| PF00300 | 13 | His_Phos_1 | Histidine phosphatase superfamily (branch 1) |
| PF00303 | 1 | Thymidylat_synt | Thymidylate synthase |
| PF00306 | 1 | ATP-synt_ab_C | ATP synthase alpha/beta chain, C terminal domain |
| PF00307 | 9 | CH | Calponin homology (CH) domain |
| PF00310 | 1 | GATase_2 | Glutamine amidotransferases class-II |
| PF00312 | 2 | Ribosomal_S15 | Ribosomal protein S15 |
| PF00314 | 1 | Thaumatin | Thaumatin family |
| PF00316 | 2 | FBPase | Fructose-1-6-bisphosphatase, N-terminal domain |
| PF00317 | 1 | Ribonuc_red_lgN | Ribonucleotide reductase, all-alpha domain |
| PF00318 | 3 | Ribosomal_S2 | Ribosomal protein S2 |
| PF00319 | 5 | SRF-TF | SRF-type transcription factor (DNA-binding and dimerisation domain) |
| PF00320 | 10 | GATA | GATA zinc finger |
| PF00324 | 63 | AA_permease | Amino acid permease |
| PF00326 | 11 | Peptidase_S9 | Prolyl oligopeptidase family |
| PF00327 | 2 | Ribosomal_L30 | Ribosomal protein L30p/L7e |
| PF00328 | 7 | His_Phos_2 | Histidine phosphatase superfamily (branch 2) |
| PF00329 | 1 | Complex1_30kDa | Respiratory-chain NADH dehydrogenase, 30 Kd subunit |
| PF00330 | 4 | Aconitase | Aconitase family (aconitate hydratase) |
| PF00332 | 4 | Glyco_hydro_17 | Glycosyl hydrolases family 17 |
| PF00333 | 2 | Ribosomal_S5 | Ribosomal protein S5, N-terminal domain |
| PF00334 | 1 | NDK | Nucleoside diphosphate kinase |
| PF00338 | 2 | Ribosomal_S10 | Ribosomal protein S10p/S20e |
| PF00339 | 5 | Arrestin_N | Arrestin (or S-antigen), N-terminal domain |
| PF00342 | 1 | PGI | Phosphoglucose isomerase |
| PF00343 | 1 | Phosphorylase | Carbohydrate phosphorylase |
| PF00344 | 1 | SecY | SecY |
| PF00346 | 1 | Complex1_49kDa | Respiratory-chain NADH dehydrogenase, 49 Kd subunit |
| PF00347 | 2 | Ribosomal_L6 | Ribosomal protein L6 |
| PF00348 | 5 | polyprenyl_synt | Polyprenyl synthetase |
| PF00349 | 5 | Hexokinase_1 | Hexokinase |
| PF00350 | 23 | Dynamin_N | Dynamin family |
| PF00352 | 2 | TBP | Transcription factor TFIID (or TATA-binding protein, TBP) |
| PF00355 | 6 | Rieske | Rieske [2Fe-2S] domain |
| PF00360 | 1 | PHY | Phytochrome region |
| PF00364 | 10 | Biotin_lipoyl | Biotin-requiring enzyme |
| PF00365 | 2 | PFK | Phosphofructokinase |
| PF00366 | 2 | Ribosomal_S17 | Ribosomal protein S17 |
| PF00368 | 3 | HMG-CoA_red | Hydroxymethylglutaryl-coenzyme A reductase |
| PF00370 | 4 | FGGY_N | FGGY family of carbohydrate kinases, N-terminal domain |
| PF00378 | 20 | ECH_1 | Enoyl-CoA hydratase/isomerase |
| PF00380 | 1 | Ribosomal_S9 | Ribosomal protein S9/S16 |
| PF00382 | 4 | TFIIB | Transcription factor TFIIB repeat |
| PF00383 | 8 | dCMP_cyt_deam_1 | Cytidine and deoxycytidylate deaminase zinc-binding region |
| PF00384 | 1 | Molybdopterin | Molybdopterin oxidoreductase |
| PF00385 | 10 | Chromo | Chromo (CHRromatin Organisation MOdifier) domain |
| PF00387 | 4 | PI-PLC-Y | Phosphatidylinositol-specific phospholipase C, Y domain |
| PF00388 | 6 | PI-PLC-X | Phosphatidylinositol-specific phospholipase C, X domain |
| PF00389 | 9 | 2-Hacid_dh | D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain |
| PF00390 | 2 | malic | Malic enzyme, N-terminal domain |
| PF00391 | 1 | PEP-utilizers | PEP-utilising enzyme, mobile domain |
| PF00393 | 3 | 6PGD | 6-phosphogluconate dehydrogenase, C-terminal domain |
| PF00394 | 11 | Cu-oxidase | Multicopper oxidase |
| PF00397 | 13 | WW | WW domain |
| PF00398 | 1 | RrnaAD | Ribosomal RNA adenine dimethylase |
| PF00399 | 6 | PIR | Yeast PIR protein repeat |
| PF00400 | 455 | WD40 | WD domain, G-beta repeat |
| PF00403 | 20 | HMA | Heavy-metal-associated domain |
| PF00406 | 5 | ADK | Adenylate kinase |
| PF00408 | 2 | PGM_PMM_IV | Phosphoglucomutase/phosphomannomutase, C-terminal domain |
| PF00410 | 2 | Ribosomal_S8 | Ribosomal protein S8 |
| PF00411 | 2 | Ribosomal_S11 | Ribosomal protein S11 |
| PF00412 | 9 | LIM | LIM domain |
| PF00413 | 2 | Peptidase_M10 | Matrixin |
| PF00415 | 17 | RCC1 | Regulator of chromosome condensation (RCC1) repeat |
| PF00416 | 2 | Ribosomal_S13 | Ribosomal protein S13/S18 |
| PF00425 | 3 | Chorismate_bind | chorismate binding enzyme |
| PF00428 | 3 | Ribosomal_60s | 60s Acidic ribosomal protein |
| PF00432 | 22 | Prenyltrans | Prenyltransferase and squalene oxidase repeat |
| PF00433 | 3 | Pkinase_C | Protein kinase C terminal domain |
| PF00436 | 1 | SSB | Single-strand binding protein family |
| PF00438 | 1 | S-AdoMet_synt_N | S-adenosylmethionine synthetase, N-terminal domain |
| PF00439 | 10 | Bromodomain | Bromodomain |
| PF00441 | 11 | Acyl-CoA_dh_1 | Acyl-CoA dehydrogenase, C-terminal domain |
| PF00443 | 13 | UCH | Ubiquitin carboxyl-terminal hydrolase |
| PF00445 | 2 | Ribonuclease_T2 | Ribonuclease T2 family |
| PF00447 | 3 | HSF_DNA-bind | HSF-type DNA-binding |
| PF00448 | 3 | SRP54 | SRP54-type protein, GTPase domain |
| PF00449 | 1 | Urease_alpha | Urease alpha-subunit, N-terminal domain |
| PF00450 | 11 | Peptidase_S10 | Serine carboxypeptidase |
| PF00454 | 8 | PI3_PI4_kinase | Phosphatidylinositol 3- and 4-kinase |
| PF00456 | 3 | Transketolase_N | Transketolase, thiamine diphosphate binding domain |
| PF00459 | 6 | Inositol_P | Inositol monophosphatase family |
| PF00462 | 4 | Glutaredoxin | Glutaredoxin |
| PF00463 | 4 | ICL | Isocitrate lyase family |
| PF00464 | 2 | SHMT | Serine hydroxymethyltransferase |
| PF00465 | 3 | Fe-ADH | Iron-containing alcohol dehydrogenase |
| PF00466 | 2 | Ribosomal_L10 | Ribosomal protein L10 |
| PF00467 | 2 | KOW | KOW motif |
| PF00472 | 3 | RF-1 | RF-1 domain |
| PF00474 | 2 | SSF | Sodium:solute symporter family |
| PF00475 | 1 | IGPD | Imidazoleglycerol-phosphate dehydratase |
| PF00476 | 1 | DNA_pol_A | DNA polymerase family A |
| PF00478 | 6 | IMPDH | IMP dehydrogenase / GMP reductase domain |
| PF00479 | 1 | G6PD_N | Glucose-6-phosphate dehydrogenase, NAD binding domain |
| PF00481 | 7 | PP2C | Protein phosphatase 2C |
| PF00483 | 2 | NTP_transferase | Nucleotidyl transferase |
| PF00484 | 2 | Pro_CA | Carbonic anhydrase |
| PF00485 | 5 | PRK | Phosphoribulokinase / Uridine kinase family |
| PF00487 | 7 | FA_desaturase | Fatty acid desaturase |
| PF00488 | 6 | MutS_V | MutS domain V |
| PF00490 | 1 | ALAD | Delta-aminolevulinic acid dehydratase |
| PF00491 | 7 | Arginase | Arginase family |
| PF00493 | 6 | MCM | MCM P-loop domain |
| PF00494 | 2 | SQS_PSY | Squalene/phytoene synthase |
| PF00498 | 15 | FHA | FHA domain |
| PF00501 | 64 | AMP-binding | AMP-binding enzyme |
| PF00503 | 4 | G-alpha | G-protein alpha subunit |
| PF00505 | 12 | HMG_box | HMG (high mobility group) box |
| PF00512 | 14 | HisKA | His Kinase A (phospho-acceptor) domain |
| PF00514 | 16 | Arm | Armadillo/beta-catenin-like repeat |
| PF00515 | 4 | TPR_1 | Tetratricopeptide repeat |
| PF00520 | 7 | Ion_trans | Ion transport protein |
| PF00521 | 1 | DNA_topoisoIV | DNA gyrase/topoisomerase IV, subunit A |
| PF00533 | 11 | BRCT | BRCA1 C Terminus (BRCT) domain |
| PF00534 | 7 | Glycos_transf_1 | Glycosyl transferases group 1 |
| PF00535 | 5 | Glycos_transf_2 | Glycosyl transferase family 2 |
| PF00536 | 5 | SAM_1 | SAM domain (Sterile alpha motif) |
| PF00538 | 1 | Linker_histone | linker histone H1 and H5 family |
| PF00542 | 1 | Ribosomal_L12 | Ribosomal protein L7/L12 C-terminal domain |
| PF00545 | 1 | Ribonuclease | ribonuclease |
| PF00547 | 1 | Urease_gamma | Urease, gamma subunit |
| PF00549 | 5 | Ligase_CoA | CoA-ligase |
| PF00550 | 56 | PP-binding | Phosphopantetheine attachment site |
| PF00551 | 3 | Formyl_trans_N | Formyl transferase |
| PF00557 | 12 | Peptidase_M24 | Metallopeptidase family M24 |
| PF00561 | 56 | Abhydrolase_1 | alpha/beta hydrolase fold |
| PF00562 | 2 | RNA_pol_Rpb2_6 | RNA polymerase Rpb2, domain 6 |
| PF00564 | 4 | PB1 | PB1 domain |
| PF00565 | 5 | SNase | Staphylococcal nuclease homologue |
| PF00566 | 13 | RabGAP-TBC | Rab-GTPase-TBC domain |
| PF00567 | 1 | TUDOR | Tudor domain |
| PF00568 | 1 | WH1 | WH1 domain |
| PF00569 | 2 | ZZ | Zinc finger, ZZ type |
| PF00570 | 1 | HRDC | HRDC domain |
| PF00571 | 16 | CBS | CBS domain |
| PF00572 | 2 | Ribosomal_L13 | Ribosomal protein L13 |
| PF00573 | 2 | Ribosomal_L4 | Ribosomal protein L4/L1 family |
| PF00574 | 1 | CLP_protease | Clp protease |
| PF00575 | 10 | S1 | S1 RNA binding domain |
| PF00576 | 1 | Transthyretin | HIUase/Transthyretin family |
| PF00578 | 6 | AhpC-TSA | AhpC/TSA family |
| PF00579 | 5 | tRNA-synt_1b | tRNA synthetases class I (W and Y) |
| PF00580 | 2 | UvrD-helicase | UvrD/REP helicase N-terminal domain |
| PF00581 | 11 | Rhodanese | Rhodanese-like domain |
| PF00582 | 2 | Usp | Universal stress protein family |
| PF00583 | 71 | Acetyltransf_1 | Acetyltransferase (GNAT) family |
| PF00585 | 2 | Thr_dehydrat_C | C-terminal regulatory domain of Threonine dehydratase |
| PF00586 | 1 | AIRS | AIR synthase related protein, N-terminal domain |
| PF00587 | 7 | tRNA-synt_2b | tRNA synthetase class II core domain (G, H, P, S and T) |
| PF00588 | 1 | SpoU_methylase | SpoU rRNA Methylase family |
| PF00590 | 2 | TP_methylase | Tetrapyrrole (Corrin/Porphyrin) Methylases |
| PF00591 | 1 | Glycos_transf_3 | Glycosyl transferase family, a/b domain |
| PF00595 | 1 | PDZ | PDZ domain |
| PF00596 | 6 | Aldolase_II | Class II Aldolase and Adducin N-terminal domain |
| PF00610 | 4 | DEP | Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP) |
| PF00611 | 5 | FCH | Fes/CIP4, and EFC/F-BAR homology domain |
| PF00612 | 3 | IQ | IQ calmodulin-binding motif |
| PF00613 | 2 | PI3Ka | Phosphoinositide 3-kinase family, accessory domain (PIK domain) |
| PF00614 | 4 | PLDc | Phospholipase D Active site motif |
| PF00615 | 6 | RGS | Regulator of G protein signaling domain |
| PF00616 | 5 | RasGAP | GTPase-activator protein for Ras-like GTPase |
| PF00617 | 4 | RasGEF | RasGEF domain |
| PF00618 | 4 | RasGEF_N | RasGEF N-terminal motif |
| PF00620 | 8 | RhoGAP | RhoGAP domain |
| PF00621 | 6 | RhoGEF | RhoGEF domain |
| PF00622 | 2 | SPRY | SPRY domain |
| PF00623 | 3 | RNA_pol_Rpb1_2 | RNA polymerase Rpb1, domain 2 |
| PF00625 | 2 | Guanylate_kin | Guanylate kinase |
| PF00626 | 5 | Gelsolin | Gelsolin repeat |
| PF00627 | 7 | UBA | UBA/TS-N domain |
| PF00628 | 11 | PHD | PHD-finger |
| PF00631 | 1 | G-gamma | GGL domain |
| PF00632 | 6 | HECT | HECT-domain (ubiquitin-transferase) |
| PF00633 | 2 | HHH | Helix-hairpin-helix motif |
| PF00635 | 1 | Motile_Sperm | MSP (Major sperm protein) domain |
| PF00636 | 5 | Ribonuclease_3 | Ribonuclease III domain |
| PF00637 | 9 | Clathrin | Region in Clathrin and VPS |
| PF00638 | 4 | Ran_BP1 | RanBP1 domain |
| PF00639 | 2 | Rotamase | PPIC-type PPIASE domain |
| PF00641 | 2 | zf-RanBP | Zn-finger in Ran binding protein and others |
| PF00642 | 7 | zf-CCCH | Zinc finger C-x8-C-x5-C-x3-H type (and similar) |
| PF00644 | 2 | PARP | Poly(ADP-ribose) polymerase catalytic domain |
| PF00645 | 1 | zf-PARP | Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region |
| PF00646 | 22 | F-box | F-box domain |
| PF00647 | 1 | EF1G | Elongation factor 1 gamma, conserved domain |
| PF00648 | 2 | Peptidase_C2 | Calpain family cysteine protease |
| PF00649 | 2 | Copper-fist | Copper fist DNA binding domain |
| PF00650 | 9 | CRAL_TRIO | CRAL/TRIO domain |
| PF00651 | 12 | BTB | BTB/POZ domain |
| PF00652 | 2 | Ricin_B_lectin | Ricin-type beta-trefoil lectin domain |
| PF00653 | 2 | BIR | Inhibitor of Apoptosis domain |
| PF00654 | 4 | Voltage_CLC | Voltage gated chloride channel |
| PF00656 | 8 | Peptidase_C14 | Caspase domain |
| PF00657 | 4 | Lipase_GDSL | GDSL-like Lipase/Acylhydrolase |
| PF00658 | 1 | PABP | Poly-adenylate binding protein, unique domain |
| PF00659 | 1 | POLO_box | POLO box duplicated region |
| PF00664 | 69 | ABC_membrane | ABC transporter transmembrane region |
| PF00665 | 5 | rve | Integrase core domain |
| PF00667 | 6 | FAD_binding_1 | FAD binding domain |
| PF00668 | 36 | Condensation | Condensation domain |
| PF00670 | 1 | AdoHcyase_NAD | S-adenosyl-L-homocysteine hydrolase, NAD binding domain |
| PF00672 | 15 | HAMP | HAMP domain |
| PF00673 | 2 | Ribosomal_L5_C | ribosomal L5P family C-terminus |
| PF00675 | 6 | Peptidase_M16 | Insulinase (Peptidase family M16) |
| PF00676 | 5 | E1_dh | Dehydrogenase E1 component |
| PF00677 | 2 | Lum_binding | Lumazine binding domain |
| PF00679 | 5 | EFG_C | Elongation factor G C-terminus |
| PF00682 | 5 | HMGL-like | HMGL-like |
| PF00684 | 4 | DnaJ_CXXCXGXG | DnaJ central domain |
| PF00686 | 2 | CBM_20 | Starch binding domain |
| PF00687 | 3 | Ribosomal_L1 | Ribosomal protein L1p/L10e family |
| PF00689 | 19 | Cation_ATPase_C | Cation transporting ATPase, C-terminus |
| PF00690 | 22 | Cation_ATPase_N | Cation transporter/ATPase, N-terminus |
| PF00692 | 1 | dUTPase | dUTPase |
| PF00694 | 4 | Aconitase_C | Aconitase C-terminal domain |
| PF00696 | 3 | AA_kinase | Amino acid kinase family |
| PF00697 | 1 | PRAI | N-(5'phosphoribosyl)anthranilate (PRA) isomerase |
| PF00698 | 16 | Acyl_transf_1 | Acyl transferase domain |
| PF00699 | 1 | Urease_beta | Urease beta subunit |
| PF00701 | 12 | DHDPS | Dihydrodipicolinate synthetase family |
| PF00702 | 54 | Hydrolase | haloacid dehalogenase-like hydrolase |
| PF00703 | 11 | Glyco_hydro_2 | Glycosyl hydrolases family 2 |
| PF00704 | 37 | Glyco_hydro_18 | Glycosyl hydrolases family 18 |
| PF00705 | 1 | PCNA_N | Proliferating cell nuclear antigen, N-terminal domain |
| PF00708 | 2 | Acylphosphatase | Acylphosphatase |
| PF00709 | 1 | Adenylsucc_synt | Adenylosuccinate synthetase |
| PF00710 | 3 | Asparaginase | Asparaginase, N-terminal |
| PF00719 | 2 | Pyrophosphatase | Inorganic pyrophosphatase |
| PF00722 | 14 | Glyco_hydro_16 | Glycosyl hydrolases family 16 |
| PF00723 | 4 | Glyco_hydro_15 | Glycosyl hydrolases family 15 |
| PF00724 | 5 | Oxidored_FMN | NADH:flavin oxidoreductase / NADH oxidase family |
| PF00725 | 6 | 3HCDH | 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain |
| PF00728 | 7 | Glyco_hydro_20 | Glycosyl hydrolase family 20, catalytic domain |
| PF00730 | 5 | HhH-GPD | HhH-GPD superfamily base excision DNA repair protein |
| PF00731 | 1 | AIRC | AIR carboxylase |
| PF00732 | 19 | GMC_oxred_N | GMC oxidoreductase |
| PF00733 | 2 | Asn_synthase | Asparagine synthase |
| PF00734 | 4 | CBM_1 | Fungal cellulose binding domain |
| PF00735 | 8 | Septin | Septin |
| PF00736 | 1 | EF1_GNE | EF-1 guanine nucleotide exchange domain |
| PF00742 | 1 | Homoserine_dh | Homoserine dehydrogenase |
| PF00743 | 36 | FMO-like | Flavin-binding monooxygenase-like |
| PF00749 | 3 | tRNA-synt_1c | tRNA synthetases class I (E and Q), catalytic domain |
| PF00750 | 2 | tRNA-synt_1d | tRNA synthetases class I (R) |
| PF00752 | 3 | XPG_N | XPG N-terminal domain |
| PF00753 | 13 | Lactamase_B | Metallo-beta-lactamase superfamily |
| PF00754 | 2 | F5_F8_type_C | F5/8 type C domain |
| PF00755 | 3 | Carn_acyltransf | Choline/Carnitine o-acyltransferase |
| PF00756 | 5 | Esterase | Putative esterase |
| PF00762 | 1 | Ferrochelatase | Ferrochelatase |
| PF00763 | 2 | THF_DHG_CYH | Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain |
| PF00764 | 1 | Arginosuc_synth | Arginosuccinate synthase |
| PF00766 | 1 | ETF_alpha | Electron transfer flavoprotein FAD-binding domain |
| PF00773 | 3 | RNB | RNB domain |
| PF00775 | 5 | Dioxygenase_C | Dioxygenase |
| PF00780 | 3 | CNH | CNH domain |
| PF00781 | 2 | DAGK_cat | Diacylglycerol kinase catalytic domain |
| PF00782 | 6 | DSPc | Dual specificity phosphatase, catalytic domain |
| PF00786 | 3 | PBD | P21-Rho-binding domain |
| PF00787 | 12 | PX | PX domain |
| PF00788 | 2 | RA | Ras association (RalGDS/AF-6) domain |
| PF00789 | 5 | UBX | UBX domain |
| PF00790 | 4 | VHS | VHS domain |
| PF00792 | 1 | PI3K_C2 | Phosphoinositide 3-kinase C2 |
| PF00793 | 2 | DAHP_synth_1 | DAHP synthetase I family |
| PF00795 | 9 | CN_hydrolase | Carbon-nitrogen hydrolase |
| PF00797 | 2 | Acetyltransf_2 | N-acetyltransferase |
| PF00804 | 2 | Syntaxin | Syntaxin |
| PF00806 | 19 | PUF | Pumilio-family RNA binding repeat |
| PF00808 | 8 | CBFD_NFYB_HMF | Histone-like transcription factor (CBF/NF-Y) and archaeal histone |
| PF00810 | 2 | ER_lumen_recept | ER lumen protein retaining receptor |
| PF00814 | 3 | TsaD | tRNA N6-adenosine threonylcarbamoyltransferase |
| PF00815 | 1 | Histidinol_dh | Histidinol dehydrogenase |
| PF00817 | 4 | IMS | impB/mucB/samB family |
| PF00827 | 1 | Ribosomal_L15e | Ribosomal L15 |
| PF00828 | 2 | Ribosomal_L27A | Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A |
| PF00829 | 1 | Ribosomal_L21p | Ribosomal prokaryotic L21 protein |
| PF00830 | 1 | Ribosomal_L28 | Ribosomal L28 family |
| PF00831 | 1 | Ribosomal_L29 | Ribosomal L29 protein |
| PF00833 | 1 | Ribosomal_S17e | Ribosomal S17 |
| PF00834 | 1 | Ribul_P_3_epim | Ribulose-phosphate 3 epimerase family |
| PF00838 | 1 | TCTP | Translationally controlled tumour protein |
| PF00848 | 3 | Ring_hydroxyl_A | Ring hydroxylating alpha subunit (catalytic domain) |
| PF00849 | 1 | PseudoU_synth_2 | RNA pseudouridylate synthase |
| PF00850 | 4 | Hist_deacetyl | Histone deacetylase domain |
| PF00854 | 6 | PTR2 | POT family |
| PF00855 | 1 | PWWP | PWWP domain |
| PF00856 | 18 | SET | SET domain |
| PF00857 | 7 | Isochorismatase | Isochorismatase family |
| PF00860 | 5 | Xan_ur_permease | Permease family |
| PF00867 | 4 | XPG_I | XPG I-region |
| PF00871 | 1 | Acetate_kinase | Acetokinase family |
| PF00875 | 3 | DNA_photolyase | DNA photolyase |
| PF00877 | 2 | NLPC_P60 | NlpC/P60 family |
| PF00881 | 2 | Nitroreductase | Nitroreductase family |
| PF00884 | 17 | Sulfatase | Sulfatase |
| PF00885 | 1 | DMRL_synthase | 6,7-dimethyl-8-ribityllumazine synthase |
| PF00886 | 1 | Ribosomal_S16 | Ribosomal protein S16 |
| PF00887 | 2 | ACBP | Acyl CoA binding protein |
| PF00888 | 4 | Cullin | Cullin family |
| PF00890 | 33 | FAD_binding_2 | FAD binding domain |
| PF00891 | 15 | Methyltransf_2 | O-methyltransferase domain |
| PF00892 | 4 | EamA | EamA-like transporter family |
| PF00899 | 9 | ThiF | ThiF family |
| PF00900 | 1 | Ribosomal_S4e | Ribosomal family S4e |
| PF00903 | 12 | Glyoxalase | Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily |
| PF00909 | 2 | Ammonium_transp | Ammonium Transporter Family |
| PF00916 | 8 | Sulfate_transp | Sulfate permease family |
| PF00917 | 1 | MATH | MATH domain |
| PF00920 | 4 | ILVD_EDD | Dehydratase family |
| PF00923 | 4 | TAL_FSA | Transaldolase/Fructose-6-phosphate aldolase |
| PF00924 | 4 | MS_channel | Mechanosensitive ion channel |
| PF00925 | 2 | GTP_cyclohydro2 | GTP cyclohydrolase II |
| PF00926 | 2 | DHBP_synthase | 3,4-dihydroxy-2-butanone 4-phosphate synthase |
| PF00928 | 4 | Adap_comp_sub | Adaptor complexes medium subunit family |
| PF00929 | 6 | RNase_T | Exonuclease |
| PF00930 | 2 | DPPIV_N | Dipeptidyl peptidase IV (DPP IV) N-terminal region |
| PF00931 | 9 | NB-ARC | NB-ARC domain |
| PF00933 | 11 | Glyco_hydro_3 | Glycosyl hydrolase family 3 N terminal domain |
| PF00935 | 1 | Ribosomal_L44 | Ribosomal protein L44 |
| PF00939 | 1 | Na_sulph_symp | Sodium:sulfate symporter transmembrane region |
| PF00940 | 1 | RNA_pol | DNA-dependent RNA polymerase |
| PF00941 | 1 | FAD_binding_5 | FAD binding domain in molybdopterin dehydrogenase |
| PF00953 | 1 | Glycos_transf_4 | Glycosyl transferase family 4 |
| PF00955 | 7 | HCO3_cotransp | HCO3- transporter family |
| PF00956 | 2 | NAP | Nucleosome assembly protein (NAP) |
| PF00957 | 5 | Synaptobrevin | Synaptobrevin |
| PF00958 | 1 | GMP_synt_C | GMP synthase C terminal domain |
| PF00959 | 4 | Phage_lysozyme | Phage lysozyme |
| PF00962 | 5 | A_deaminase | Adenosine deaminase |
| PF00967 | 1 | Barwin | Barwin family |
| PF00970 | 12 | FAD_binding_6 | Oxidoreductase FAD-binding domain |
| PF00975 | 6 | Thioesterase | Thioesterase domain |
| PF00977 | 2 | His_biosynth | Histidine biosynthesis protein |
| PF00982 | 6 | Glyco_transf_20 | Glycosyltransferase family 20 |
| PF00984 | 2 | UDPG_MGDP_dh | UDP-glucose/GDP-mannose dehydrogenase family, central domain |
| PF00988 | 2 | CPSase_sm_chain | Carbamoyl-phosphate synthase small chain, CPSase domain |
| PF00989 | 9 | PAS | PAS fold |
| PF00994 | 3 | MoCF_biosynth | Probable molybdopterin binding domain |
| PF00995 | 4 | Sec1 | Sec1 family |
| PF00996 | 2 | GDI | GDP dissociation inhibitor |
| PF00999 | 7 | Na_H_Exchanger | Sodium/hydrogen exchanger family |
| PF01000 | 2 | RNA_pol_A_bac | RNA polymerase Rpb3/RpoA insert domain |
| PF01008 | 5 | IF-2B | Initiation factor 2 subunit family |
| PF01011 | 1 | PQQ | PQQ enzyme repeat |
| PF01012 | 2 | ETF | Electron transfer flavoprotein domain |
| PF01014 | 2 | Uricase | Uricase |
| PF01015 | 1 | Ribosomal_S3Ae | Ribosomal S3Ae family |
| PF01016 | 1 | Ribosomal_L27 | Ribosomal L27 protein |
| PF01018 | 2 | GTP1_OBG | GTP1/OBG |
| PF01019 | 4 | G_glu_transpept | Gamma-glutamyltranspeptidase |
| PF01020 | 1 | Ribosomal_L40e | Ribosomal L40e family |
| PF01025 | 1 | GrpE | GrpE |
| PF01026 | 2 | TatD_DNase | TatD related DNase |
| PF01027 | 2 | Bax1-I | Inhibitor of apoptosis-promoting Bax1 |
| PF01028 | 1 | Topoisom_I | Eukaryotic DNA topoisomerase I, catalytic core |
| PF01031 | 15 | Dynamin_M | Dynamin central region |
| PF01035 | 1 | DNA_binding_1 | 6-O-methylguanine DNA methyltransferase, DNA binding domain |
| PF01039 | 2 | Carboxyl_trans | Carboxyl transferase domain |
| PF01040 | 3 | UbiA | UbiA prenyltransferase family |
| PF01041 | 4 | DegT_DnrJ_EryC1 | DegT/DnrJ/EryC1/StrS aminotransferase family |
| PF01042 | 13 | Ribonuc_L-PSP | Endoribonuclease L-PSP |
| PF01048 | 9 | PNP_UDP_1 | Phosphorylase superfamily |
| PF01053 | 9 | Cys_Met_Meta_PP | Cys/Met metabolism PLP-dependent enzyme |
| PF01055 | 6 | Glyco_hydro_31 | Glycosyl hydrolases family 31 |
| PF01058 | 3 | Oxidored_q6 | NADH ubiquinone oxidoreductase, 20 Kd subunit |
| PF01061 | 24 | ABC2_membrane | ABC-2 type transporter |
| PF01062 | 2 | Bestrophin | Bestrophin, RFP-TM, chloride channel |
| PF01063 | 9 | Aminotran_4 | Amino-transferase class IV |
| PF01066 | 5 | CDP-OH_P_transf | CDP-alcohol phosphatidyltransferase |
| PF01067 | 1 | Calpain_III | Calpain large subunit, domain III |
| PF01068 | 5 | DNA_ligase_A_M | ATP dependent DNA ligase domain |
| PF01070 | 10 | FMN_dh | FMN-dependent dehydrogenase |
| PF01071 | 2 | GARS_A | Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain |
| PF01073 | 23 | 3Beta_HSD | 3-beta hydroxysteroid dehydrogenase/isomerase family |
| PF01074 | 1 | Glyco_hydro_38N | Glycosyl hydrolases family 38 N-terminal domain |
| PF01077 | 2 | NIR_SIR | Nitrite and sulphite reductase 4Fe-4S domain |
| PF01078 | 5 | Mg_chelatase | Magnesium chelatase, subunit ChlI |
| PF01083 | 5 | Cutinase | Cutinase |
| PF01084 | 1 | Ribosomal_S18 | Ribosomal protein S18 |
| PF01086 | 1 | Clathrin_lg_ch | Clathrin light chain |
| PF01087 | 1 | GalP_UDP_transf | Galactose-1-phosphate uridyl transferase, N-terminal domain |
| PF01088 | 4 | Peptidase_C12 | Ubiquitin carboxyl-terminal hydrolase, family 1 |
| PF01090 | 1 | Ribosomal_S19e | Ribosomal protein S19e |
| PF01092 | 1 | Ribosomal_S6e | Ribosomal protein S6e |
| PF01094 | 1 | ANF_receptor | Receptor family ligand binding region |
| PF01096 | 2 | TFIIS_C | Transcription factor S-II (TFIIS) |
| PF01097 | 1 | Defensin_2 | Arthropod defensin |
| PF01103 | 1 | Omp85 | Omp85 superfamily domain |
| PF01105 | 4 | EMP24_GP25L | emp24/gp25L/p24 family/GOLD |
| PF01106 | 1 | NifU | NifU-like domain |
| PF01111 | 1 | CKS | Cyclin-dependent kinase regulatory subunit |
| PF01112 | 5 | Asparaginase_2 | Asparaginase |
| PF01115 | 1 | F_actin_cap_B | F-actin capping protein, beta subunit |
| PF01116 | 1 | F_bP_aldolase | Fructose-bisphosphate aldolase class-II |
| PF01118 | 2 | Semialdhyde_dh | Semialdehyde dehydrogenase, NAD binding domain |
| PF01119 | 3 | DNA_mis_repair | DNA mismatch repair protein, C-terminal domain |
| PF01120 | 3 | Alpha_L_fucos | Alpha-L-fucosidase |
| PF01121 | 1 | CoaE | Dephospho-CoA kinase |
| PF01124 | 3 | MAPEG | MAPEG family |
| PF01125 | 1 | G10 | G10 protein |
| PF01126 | 1 | Heme_oxygenase | Heme oxygenase |
| PF01127 | 1 | Sdh_cyt | Succinate dehydrogenase/Fumarate reductase transmembrane subunit |
| PF01131 | 1 | Topoisom_bac | DNA topoisomerase |
| PF01134 | 4 | GIDA | Glucose inhibited division protein A |
| PF01135 | 9 | PCMT | Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) |
| PF01137 | 2 | RTC | RNA 3'-terminal phosphate cyclase |
| PF01138 | 6 | RNase_PH | 3' exoribonuclease family, domain 1 |
| PF01142 | 1 | TruD | tRNA pseudouridine synthase D (TruD) |
| PF01144 | 4 | CoA_trans | Coenzyme A transferase |
| PF01145 | 5 | Band_7 | SPFH domain / Band 7 family |
| PF01148 | 1 | CTP_transf_1 | Cytidylyltransferase family |
| PF01149 | 1 | Fapy_DNA_glyco | Formamidopyrimidine-DNA glycosylase N-terminal domain |
| PF01150 | 2 | GDA1_CD39 | GDA1/CD39 (nucleoside phosphatase) family |
| PF01151 | 3 | ELO | GNS1/SUR4 family |
| PF01154 | 1 | HMG_CoA_synt_N | Hydroxymethylglutaryl-coenzyme A synthase N terminal |
| PF01156 | 2 | IU_nuc_hydro | Inosine-uridine preferring nucleoside hydrolase |
| PF01157 | 1 | Ribosomal_L21e | Ribosomal protein L21e |
| PF01158 | 1 | Ribosomal_L36e | Ribosomal protein L36e |
| PF01159 | 1 | Ribosomal_L6e | Ribosomal protein L6e |
| PF01161 | 3 | PBP | Phosphatidylethanolamine-binding protein |
| PF01163 | 2 | RIO1 | RIO1 family |
| PF01165 | 1 | Ribosomal_S21 | Ribosomal protein S21 |
| PF01168 | 2 | Ala_racemase_N | Alanine racemase, N-terminal domain |
| PF01169 | 2 | UPF0016 | Uncharacterized protein family UPF0016 |
| PF01171 | 3 | ATP_bind_3 | PP-loop family |
| PF01172 | 2 | SBDS | Shwachman-Bodian-Diamond syndrome (SBDS) protein |
| PF01174 | 2 | SNO | SNO glutamine amidotransferase family |
| PF01176 | 2 | eIF-1a | Translation initiation factor 1A / IF-1 |
| PF01177 | 5 | Asp_Glu_race | Asp/Glu/Hydantoin racemase |
| PF01179 | 5 | Cu_amine_oxid | Copper amine oxidase, enzyme domain |
| PF01180 | 2 | DHO_dh | Dihydroorotate dehydrogenase |
| PF01182 | 2 | Glucosamine_iso | Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase |
| PF01183 | 2 | Glyco_hydro_25 | Glycosyl hydrolases family 25 |
| PF01184 | 4 | Gpr1_Fun34_YaaH | GPR1/FUN34/yaaH family |
| PF01185 | 2 | Hydrophobin | Fungal hydrophobin |
| PF01187 | 1 | MIF | Macrophage migration inhibitory factor (MIF) |
| PF01189 | 3 | Methyltr_RsmB-F | 16S rRNA methyltransferase RsmB/F |
| PF01191 | 1 | RNA_pol_Rpb5_C | RNA polymerase Rpb5, C-terminal domain |
| PF01192 | 1 | RNA_pol_Rpb6 | RNA polymerase Rpb6 |
| PF01193 | 3 | RNA_pol_L | RNA polymerase Rpb3/Rpb11 dimerisation domain |
| PF01194 | 1 | RNA_pol_N | RNA polymerases N / 8 kDa subunit |
| PF01195 | 1 | Pept_tRNA_hydro | Peptidyl-tRNA hydrolase |
| PF01196 | 1 | Ribosomal_L17 | Ribosomal protein L17 |
| PF01198 | 1 | Ribosomal_L31e | Ribosomal protein L31e |
| PF01199 | 1 | Ribosomal_L34e | Ribosomal protein L34e |
| PF01200 | 1 | Ribosomal_S28e | Ribosomal protein S28e |
| PF01201 | 2 | Ribosomal_S8e | Ribosomal protein S8e |
| PF01202 | 3 | SKI | Shikimate kinase |
| PF01204 | 2 | Trehalase | Trehalase |
| PF01205 | 2 | UPF0029 | Uncharacterized protein family UPF0029 |
| PF01207 | 5 | Dus | Dihydrouridine synthase (Dus) |
| PF01208 | 1 | URO-D | Uroporphyrinogen decarboxylase (URO-D) |
| PF01209 | 25 | Ubie_methyltran | ubiE/COQ5 methyltransferase family |
| PF01210 | 2 | NAD_Gly3P_dh_N | NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus |
| PF01212 | 5 | Beta_elim_lyase | Beta-eliminating lyase |
| PF01213 | 1 | CAP_N | Adenylate cyclase associated (CAP) N terminal |
| PF01214 | 2 | CK_II_beta | Casein kinase II regulatory subunit |
| PF01215 | 1 | COX5B | Cytochrome c oxidase subunit Vb |
| PF01216 | 1 | Calsequestrin | Calsequestrin |
| PF01217 | 7 | Clat_adaptor_s | Clathrin adaptor complex small chain |
| PF01218 | 1 | Coprogen_oxidas | Coproporphyrinogen III oxidase |
| PF01220 | 1 | DHquinase_II | Dehydroquinase class II |
| PF01222 | 3 | ERG4_ERG24 | Ergosterol biosynthesis ERG4/ERG24 family |
| PF01223 | 1 | Endonuclease_NS | DNA/RNA non-specific endonuclease |
| PF01227 | 3 | GTP_cyclohydroI | GTP cyclohydrolase I |
| PF01230 | 4 | HIT | HIT domain |
| PF01231 | 6 | IDO | Indoleamine 2,3-dioxygenase |
| PF01232 | 1 | Mannitol_dh | Mannitol dehydrogenase Rossmann domain |
| PF01233 | 1 | NMT | Myristoyl-CoA:protein N-myristoyltransferase, N-terminal domain |
| PF01237 | 6 | Oxysterol_BP | Oxysterol-binding protein |
| PF01238 | 1 | PMI_typeI_C | Phosphomannose isomerase type I C-terminal |
| PF01239 | 10 | PPTA | Protein prenyltransferase alpha subunit repeat |
| PF01243 | 5 | Putative_PNPOx | Pyridoxamine 5'-phosphate oxidase |
| PF01244 | 2 | Peptidase_M19 | Membrane dipeptidase (Peptidase family M19) |
| PF01245 | 1 | Ribosomal_L19 | Ribosomal protein L19 |
| PF01246 | 2 | Ribosomal_L24e | Ribosomal protein L24e |
| PF01247 | 1 | Ribosomal_L35Ae | Ribosomal protein L35Ae |
| PF01248 | 5 | Ribosomal_L7Ae | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family |
| PF01249 | 1 | Ribosomal_S21e | Ribosomal protein S21e |
| PF01250 | 1 | Ribosomal_S6 | Ribosomal protein S6 |
| PF01251 | 1 | Ribosomal_S7e | Ribosomal protein S7e |
| PF01253 | 2 | SUI1 | Translation initiation factor SUI1 |
| PF01255 | 1 | Prenyltransf | Putative undecaprenyl diphosphate synthase |
| PF01256 | 1 | Carb_kinase | Carbohydrate kinase |
| PF01257 | 1 | 2Fe-2S_thioredx | Thioredoxin-like [2Fe-2S] ferredoxin |
| PF01259 | 1 | SAICAR_synt | SAICAR synthetase |
| PF01261 | 3 | AP_endonuc_2 | Xylose isomerase-like TIM barrel |
| PF01262 | 1 | AlaDh_PNT_C | Alanine dehydrogenase/PNT, C-terminal domain |
| PF01263 | 3 | Aldose_epim | Aldose 1-epimerase |
| PF01264 | 1 | Chorismate_synt | Chorismate synthase |
| PF01265 | 2 | Cyto_heme_lyase | Cytochrome c/c1 heme lyase |
| PF01266 | 44 | DAO | FAD dependent oxidoreductase |
| PF01267 | 1 | F-actin_cap_A | F-actin capping protein alpha subunit |
| PF01268 | 1 | FTHFS | Formate--tetrahydrofolate ligase |
| PF01269 | 1 | Fibrillarin | Fibrillarin |
| PF01274 | 1 | Malate_synthase | Malate synthase |
| PF01280 | 1 | Ribosomal_L19e | Ribosomal protein L19e |
| PF01282 | 1 | Ribosomal_S24e | Ribosomal protein S24e |
| PF01283 | 1 | Ribosomal_S26e | Ribosomal protein S26e |
| PF01284 | 6 | MARVEL | Membrane-associating domain |
| PF01285 | 1 | TEA | TEA/ATTS domain |
| PF01287 | 1 | eIF-5a | Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold |
| PF01293 | 1 | PEPCK_ATP | Phosphoenolpyruvate carboxykinase |
| PF01294 | 1 | Ribosomal_L13e | Ribosomal protein L13e |
| PF01300 | 1 | Sua5_yciO_yrdC | Telomere recombination |
| PF01301 | 2 | Glyco_hydro_35 | Glycosyl hydrolases family 35 |
| PF01302 | 4 | CAP_GLY | CAP-Gly domain |
| PF01306 | 1 | LacY_symp | LacY proton/sugar symporter |
| PF01315 | 1 | Ald_Xan_dh_C | Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain |
| PF01321 | 2 | Creatinase_N | Creatinase/Prolidase N-terminal domain |
| PF01323 | 5 | DSBA | DSBA-like thioredoxin domain |
| PF01326 | 1 | PPDK_N | Pyruvate phosphate dikinase, AMP/ATP-binding domain |
| PF01329 | 1 | Pterin_4a | Pterin 4 alpha carbinolamine dehydratase |
| PF01331 | 1 | mRNA_cap_enzyme | mRNA capping enzyme, catalytic domain |
| PF01336 | 6 | tRNA_anti-codon | OB-fold nucleic acid binding domain |
| PF01344 | 10 | Kelch_1 | Kelch motif |
| PF01351 | 1 | RNase_HII | Ribonuclease HII |
| PF01363 | 5 | FYVE | FYVE zinc finger |
| PF01368 | 1 | DHH | DHH family |
| PF01369 | 4 | Sec7 | Sec7 domain |
| PF01370 | 62 | Epimerase | NAD dependent epimerase/dehydratase family |
| PF01375 | 2 | Enterotoxin_a | Heat-labile enterotoxin alpha chain |
| PF01379 | 2 | Porphobil_deam | Porphobilinogen deaminase, dipyromethane cofactor binding domain |
| PF01380 | 3 | SIS | SIS domain |
| PF01381 | 1 | HTH_3 | Helix-turn-helix |
| PF01384 | 6 | PHO4 | Phosphate transporter family |
| PF01388 | 3 | ARID | ARID/BRIGHT DNA binding domain |
| PF01391 | 1 | Collagen | Collagen triple helix repeat (20 copies) |
| PF01393 | 2 | Chromo_shadow | Chromo shadow domain |
| PF01394 | 1 | Clathrin_propel | Clathrin propeller repeat |
| PF01398 | 7 | JAB | JAB1/Mov34/MPN/PAD-1 ubiquitin protease |
| PF01399 | 14 | PCI | PCI domain |
| PF01400 | 1 | Astacin | Astacin (Peptidase family M12A) |
| PF01406 | 2 | tRNA-synt_1e | tRNA synthetases class I (C) catalytic domain |
| PF01408 | 14 | GFO_IDH_MocA | Oxidoreductase family, NAD-binding Rossmann fold |
| PF01409 | 4 | tRNA-synt_2d | tRNA synthetases class II core domain (F) |
| PF01411 | 2 | tRNA-synt_2c | tRNA synthetases class II (A) |
| PF01412 | 4 | ArfGap | Putative GTPase activating protein for Arf |
| PF01416 | 2 | PseudoU_synth_1 | tRNA pseudouridine synthase |
| PF01417 | 4 | ENTH | ENTH domain |
| PF01423 | 14 | LSM | LSM domain |
| PF01424 | 4 | R3H | R3H domain |
| PF01425 | 36 | Amidase | Amidase |
| PF01426 | 3 | BAH | BAH domain |
| PF01428 | 3 | zf-AN1 | AN1-like Zinc finger |
| PF01432 | 6 | Peptidase_M3 | Peptidase family M3 |
| PF01433 | 3 | Peptidase_M1 | Peptidase family M1 domain |
| PF01434 | 2 | Peptidase_M41 | Peptidase family M41 |
| PF01435 | 3 | Peptidase_M48 | Peptidase family M48 |
| PF01443 | 1 | Viral_helicase1 | Viral (Superfamily 1) RNA helicase |
| PF01447 | 1 | Peptidase_M4 | Thermolysin metallopeptidase, catalytic domain |
| PF01450 | 1 | IlvC | Acetohydroxy acid isomeroreductase, catalytic domain |
| PF01451 | 1 | LMWPc | Low molecular weight phosphotyrosine protein phosphatase |
| PF01454 | 1 | MAGE | MAGE homology domain |
| PF01459 | 3 | Porin_3 | Eukaryotic porin |
| PF01464 | 1 | SLT | Transglycosylase SLT domain |
| PF01465 | 1 | GRIP | GRIP domain |
| PF01466 | 7 | Skp1 | Skp1 family, dimerisation domain |
| PF01467 | 3 | CTP_transf_like | Cytidylyltransferase-like |
| PF01470 | 1 | Peptidase_C15 | Pyroglutamyl peptidase |
| PF01471 | 1 | PG_binding_1 | Putative peptidoglycan binding domain |
| PF01472 | 3 | PUA | PUA domain |
| PF01474 | 3 | DAHP_synth_2 | Class-II DAHP synthetase family |
| PF01476 | 30 | LysM | LysM domain |
| PF01479 | 4 | S4 | S4 domain |
| PF01480 | 3 | PWI | PWI domain |
| PF01483 | 1 | P_proprotein | Proprotein convertase P-domain |
| PF01485 | 13 | IBR | IBR domain, a half RING-finger domain |
| PF01487 | 3 | DHquinase_I | Type I 3-dehydroquinase |
| PF01488 | 4 | Shikimate_DH | Shikimate / quinate 5-dehydrogenase |
| PF01490 | 18 | Aa_trans | Transmembrane amino acid transporter protein |
| PF01491 | 1 | Frataxin_Cyay | Frataxin-like domain |
| PF01493 | 1 | GXGXG | GXGXG motif |
| PF01494 | 56 | FAD_binding_3 | FAD binding domain |
| PF01496 | 1 | V_ATPase_I | V-type ATPase 116kDa subunit family |
| PF01501 | 2 | Glyco_transf_8 | Glycosyl transferase family 8 |
| PF01502 | 1 | PRA-CH | Phosphoribosyl-AMP cyclohydrolase |
| PF01503 | 1 | PRA-PH | Phosphoribosyl-ATP pyrophosphohydrolase |
| PF01504 | 3 | PIP5K | Phosphatidylinositol-4-phosphate 5-Kinase |
| PF01507 | 2 | PAPS_reduct | Phosphoadenosine phosphosulfate reductase family |
| PF01509 | 2 | TruB_N | TruB family pseudouridylate synthase (N terminal domain) |
| PF01512 | 1 | Complex1_51K | Respiratory-chain NADH dehydrogenase 51 Kd subunit |
| PF01513 | 3 | NAD_kinase | ATP-NAD kinase N-terminal domain |
| PF01521 | 2 | Fe-S_biosyn | Iron-sulphur cluster biosynthesis |
| PF01522 | 8 | Polysacc_deac_1 | Polysaccharide deacetylase |
| PF01529 | 6 | DHHC | DHHC palmitoyltransferase |
| PF01532 | 8 | Glyco_hydro_47 | Glycosyl hydrolase family 47 |
| PF01535 | 10 | PPR | PPR repeat |
| PF01536 | 1 | SAM_decarbox | Adenosylmethionine decarboxylase |
| PF01541 | 1 | GIY-YIG | GIY-YIG catalytic domain |
| PF01544 | 13 | CorA | CorA-like Mg2+ transporter protein |
| PF01545 | 11 | Cation_efflux | Cation efflux family |
| PF01546 | 17 | Peptidase_M20 | Peptidase family M20/M25/M40 |
| PF01547 | 1 | SBP_bac_1 | Bacterial extracellular solute-binding protein |
| PF01553 | 5 | Acyltransferase | Acyltransferase |
| PF01554 | 10 | MatE | MatE |
| PF01556 | 5 | DnaJ_C | DnaJ C terminal domain |
| PF01557 | 8 | FAA_hydrolase | Fumarylacetoacetate (FAA) hydrolase family |
| PF01558 | 1 | POR | Pyruvate ferredoxin/flavodoxin oxidoreductase |
| PF01564 | 2 | Spermine_synth | Spermine/spermidine synthase domain |
| PF01565 | 42 | FAD_binding_4 | FAD binding domain |
| PF01566 | 4 | Nramp | Natural resistance-associated macrophage protein |
| PF01569 | 8 | PAP2 | PAP2 superfamily |
| PF01571 | 3 | GCV_T | Aminomethyltransferase folate-binding domain |
| PF01575 | 4 | MaoC_dehydratas | MaoC like domain |
| PF01583 | 3 | APS_kinase | Adenylylsulphate kinase |
| PF01585 | 6 | G-patch | G-patch domain |
| PF01588 | 1 | tRNA_bind | Putative tRNA binding domain |
| PF01590 | 2 | GAF | GAF domain |
| PF01591 | 4 | 6PF2K | 6-phosphofructo-2-kinase |
| PF01592 | 1 | NifU_N | NifU-like N terminal domain |
| PF01593 | 22 | Amino_oxidase | Flavin containing amine oxidoreductase |
| PF01595 | 1 | CNNM | Cyclin M transmembrane N-terminal domain |
| PF01596 | 6 | Methyltransf_3 | O-methyltransferase |
| PF01597 | 1 | GCV_H | Glycine cleavage H-protein |
| PF01599 | 1 | Ribosomal_S27 | Ribosomal protein S27a |
| PF01602 | 8 | Adaptin_N | Adaptin N terminal region |
| PF01603 | 1 | B56 | Protein phosphatase 2A regulatory B subunit (B56 family) |
| PF01608 | 1 | I_LWEQ | I/LWEQ domain |
| PF01612 | 2 | DNA_pol_A_exo1 | 3'-5' exonuclease |
| PF01613 | 4 | Flavin_Reduct | Flavin reductase like domain |
| PF01619 | 6 | Pro_dh | Proline dehydrogenase |
| PF01624 | 4 | MutS_I | MutS domain I |
| PF01625 | 1 | PMSR | Peptide methionine sulfoxide reductase |
| PF01627 | 2 | Hpt | Hpt domain |
| PF01633 | 12 | Choline_kinase | Choline/ethanolamine kinase |
| PF01634 | 1 | HisG | ATP phosphoribosyltransferase |
| PF01636 | 53 | APH | Phosphotransferase enzyme family |
| PF01641 | 1 | SelR | SelR domain |
| PF01644 | 3 | Chitin_synth_1 | Chitin synthase |
| PF01645 | 6 | Glu_synthase | Conserved region in glutamate synthase |
| PF01648 | 3 | ACPS | 4'-phosphopantetheinyl transferase superfamily |
| PF01650 | 1 | Peptidase_C13 | Peptidase C13 family |
| PF01652 | 3 | IF4E | Eukaryotic initiation factor 4E |
| PF01655 | 1 | Ribosomal_L32e | Ribosomal protein L32 |
| PF01656 | 3 | CbiA | CobQ/CobB/MinD/ParA nucleotide binding domain |
| PF01658 | 1 | Inos-1-P_synth | Myo-inositol-1-phosphate synthase |
| PF01661 | 1 | Macro | Macro domain |
| PF01663 | 12 | Phosphodiest | Type I phosphodiesterase / nucleotide pyrophosphatase |
| PF01667 | 1 | Ribosomal_S27e | Ribosomal protein S27 |
| PF01670 | 2 | Glyco_hydro_12 | Glycosyl hydrolase family 12 |
| PF01674 | 1 | Lipase_2 | Lipase (class 2) |
| PF01676 | 1 | Metalloenzyme | Metalloenzyme superfamily |
| PF01679 | 2 | Pmp3 | Proteolipid membrane potential modulator |
| PF01680 | 1 | SOR_SNZ | SOR/SNZ family |
| PF01687 | 2 | Flavokinase | Riboflavin kinase |
| PF01693 | 3 | Cauli_VI | Caulimovirus viroplasmin |
| PF01694 | 3 | Rhomboid | Rhomboid family |
| PF01699 | 20 | Na_Ca_ex | Sodium/calcium exchanger protein |
| PF01702 | 2 | TGT | Queuine tRNA-ribosyltransferase |
| PF01704 | 2 | UDPGP | UTP--glucose-1-phosphate uridylyltransferase |
| PF01709 | 1 | Transcrip_reg | Transcriptional regulator |
| PF01713 | 2 | Smr | Smr domain |
| PF01715 | 1 | IPPT | IPP transferase |
| PF01717 | 2 | Meth_synt_2 | Cobalamin-independent synthase, Catalytic domain |
| PF01722 | 3 | BolA | BolA-like protein |
| PF01725 | 1 | Ham1p_like | Ham1 family |
| PF01728 | 4 | FtsJ | FtsJ-like methyltransferase |
| PF01729 | 1 | QRPTase_C | Quinolinate phosphoribosyl transferase, C-terminal domain |
| PF01730 | 1 | UreF | UreF |
| PF01733 | 1 | Nucleoside_tran | Nucleoside transporter |
| PF01734 | 15 | Patatin | Patatin-like phospholipase |
| PF01735 | 4 | PLA2_B | Lysophospholipase catalytic domain |
| PF01738 | 15 | DLH | Dienelactone hydrolase family |
| PF01740 | 7 | STAS | STAS domain |
| PF01741 | 1 | MscL | Large-conductance mechanosensitive channel, MscL |
| PF01743 | 1 | PolyA_pol | Poly A polymerase head domain |
| PF01746 | 1 | tRNA_m1G_MT | tRNA (Guanine-1)-methyltransferase |
| PF01747 | 1 | ATP-sulfurylase | ATP-sulfurylase |
| PF01749 | 1 | IBB | Importin beta binding domain |
| PF01751 | 2 | Toprim | Toprim domain |
| PF01753 | 11 | zf-MYND | MYND finger |
| PF01757 | 5 | Acyl_transf_3 | Acyltransferase family |
| PF01758 | 4 | SBF | Sodium Bile acid symporter family |
| PF01761 | 2 | DHQ_synthase | 3-dehydroquinate synthase |
| PF01764 | 7 | Lipase_3 | Lipase (class 3) |
| PF01765 | 1 | RRF | Ribosome recycling factor |
| PF01773 | 1 | Nucleos_tra2_N | Na+ dependent nucleoside transporter N-terminus |
| PF01774 | 1 | UreD | UreD urease accessory protein |
| PF01775 | 1 | Ribosomal_L18A | Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A |
| PF01776 | 1 | Ribosomal_L22e | Ribosomal L22e protein family |
| PF01777 | 1 | Ribosomal_L27e | Ribosomal L27e protein family |
| PF01778 | 2 | Ribosomal_L28e | Ribosomal L28e protein family |
| PF01780 | 1 | Ribosomal_L37ae | Ribosomal L37ae protein family |
| PF01781 | 1 | Ribosomal_L38e | Ribosomal L38e protein family |
| PF01783 | 1 | Ribosomal_L32p | Ribosomal L32p protein family |
| PF01784 | 1 | NIF3 | NIF3 (NGG1p interacting factor 3) |
| PF01786 | 1 | AOX | Alternative oxidase |
| PF01790 | 1 | LGT | Prolipoprotein diacylglyceryl transferase |
| PF01791 | 1 | DeoC | DeoC/LacD family aldolase |
| PF01793 | 4 | Glyco_transf_15 | Glycolipid 2-alpha-mannosyltransferase |
| PF01794 | 15 | Ferric_reduct | Ferric reductase like transmembrane component |
| PF01798 | 3 | Nop | snoRNA binding domain, fibrillarin |
| PF01799 | 1 | Fer2_2 | [2Fe-2S] binding domain |
| PF01803 | 1 | LIM_bind | LIM-domain binding protein |
| PF01805 | 3 | Surp | Surp module |
| PF01808 | 1 | AICARFT_IMPCHas | AICARFT/IMPCHase bienzyme |
| PF01812 | 1 | 5-FTHF_cyc-lig | 5-formyltetrahydrofolate cyclo-ligase family |
| PF01813 | 1 | ATP-synt_D | ATP synthase subunit D |
| PF01814 | 6 | Hemerythrin | Hemerythrin HHE cation binding domain |
| PF01822 | 25 | WSC | WSC domain |
| PF01828 | 8 | Peptidase_A4 | Peptidase A4 family |
| PF01833 | 1 | TIG | IPT/TIG domain |
| PF01841 | 3 | Transglut_core | Transglutaminase-like superfamily |
| PF01842 | 3 | ACT | ACT domain |
| PF01843 | 2 | DIL | DIL domain |
| PF01846 | 4 | FF | FF domain |
| PF01849 | 2 | NAC | NAC domain |
| PF01851 | 5 | PC_rep | Proteasome/cyclosome repeat |
| PF01853 | 3 | MOZ_SAS | MOZ/SAS family |
| PF01863 | 1 | YgjP-like | YgjP-like, metallopeptidase domain |
| PF01866 | 1 | Diphthamide_syn | Putative diphthamide synthesis protein |
| PF01868 | 1 | RNase_P-MRP_p29 | Ribonuclease P/MRP, subunit p29 |
| PF01869 | 2 | BcrAD_BadFG | BadF/BadG/BcrA/BcrD ATPase family |
| PF01871 | 1 | AMMECR1 | AMMECR1 |
| PF01872 | 2 | RibD_C | RibD C-terminal domain |
| PF01873 | 2 | eIF-5_eIF-2B | Domain found in IF2B/IF5 |
| PF01875 | 1 | Memo | Memo-like protein |
| PF01876 | 1 | RNase_P_p30 | RNase P subunit p30 |
| PF01878 | 1 | EVE | EVE domain |
| PF01883 | 1 | FeS_assembly_P | Iron-sulfur cluster assembly protein |
| PF01885 | 1 | PTS_2-RNA | RNA 2'-phosphotransferase, Tpt1 / KptA family |
| PF01894 | 1 | UPF0047 | Uncharacterised protein family UPF0047 |
| PF01896 | 1 | DNA_primase_S | DNA primase small subunit |
| PF01900 | 1 | RNase_P_Rpp14 | Rpp14/Pop5 family |
| PF01902 | 1 | Diphthami_syn_2 | Diphthamide synthase |
| PF01906 | 2 | YbjQ_1 | Putative heavy-metal-binding |
| PF01907 | 1 | Ribosomal_L37e | Ribosomal protein L37e |
| PF01909 | 3 | NTP_transf_2 | Nucleotidyltransferase domain |
| PF01910 | 2 | Thiamine_BP | Thiamine-binding protein |
| PF01912 | 1 | eIF-6 | eIF-6 family |
| PF01915 | 8 | Glyco_hydro_3_C | Glycosyl hydrolase family 3 C-terminal domain |
| PF01916 | 1 | DS | Deoxyhypusine synthase |
| PF01918 | 2 | Alba | Alba |
| PF01920 | 4 | Prefoldin_2 | Prefoldin subunit |
| PF01922 | 1 | SRP19 | SRP19 protein |
| PF01926 | 34 | MMR_HSR1 | 50S ribosome-binding GTPase |
| PF01929 | 1 | Ribosomal_L14e | Ribosomal protein L14 |
| PF01930 | 1 | Cas_Cas4 | Domain of unknown function DUF83 |
| PF01931 | 2 | NTPase_I-T | Protein of unknown function DUF84 |
| PF01933 | 1 | CofD | 2-phospho-L-lactate transferase CofD |
| PF01936 | 2 | NYN | NYN domain |
| PF01937 | 1 | ARMT1-like_dom | Damage-control phosphatase ARMT1-like domain |
| PF01938 | 1 | TRAM | TRAM domain |
| PF01940 | 1 | DUF92 | Integral membrane protein DUF92 |
| PF01946 | 2 | Thi4 | Thi4 family |
| PF01956 | 1 | EMC3_TMCO1 | Integral membrane protein EMC3/TMCO1-like |
| PF01960 | 1 | ArgJ | ArgJ family |
| PF01965 | 7 | DJ-1_PfpI | DJ-1/PfpI family |
| PF01966 | 4 | HD | HD domain |
| PF01967 | 1 | MoaC | MoaC family |
| PF01968 | 6 | Hydantoinase_A | Hydantoinase/oxoprolinase |
| PF01974 | 2 | tRNA_int_endo | tRNA intron endonuclease, catalytic C-terminal domain |
| PF01975 | 4 | SurE | Survival protein SurE |
| PF01977 | 1 | UbiD | 3-octaprenyl-4-hydroxybenzoate carboxy-lyase |
| PF01979 | 18 | Amidohydro_1 | Amidohydrolase family |
| PF01981 | 1 | PTH2 | Peptidyl-tRNA hydrolase PTH2 |
| PF01984 | 1 | dsDNA_bind | Double-stranded DNA-binding domain |
| PF01987 | 3 | AIM24 | Mitochondrial biogenesis AIM24 |
| PF01988 | 2 | VIT1 | VIT family |
| PF01989 | 1 | AcnX_swivel_put | Aconitase X swivel domain |
| PF01990 | 2 | ATP-synt_F | ATP synthase (F/14-kDa) subunit |
| PF01991 | 1 | vATP-synt_E | ATP synthase (E/31 kDa) subunit |
| PF01992 | 1 | vATP-synt_AC39 | ATP synthase (C/AC39) subunit |
| PF01997 | 2 | Translin | Translin family |
| PF02002 | 2 | TFIIE_alpha | TFIIE alpha subunit |
| PF02005 | 2 | TRM | N2,N2-dimethylguanosine tRNA methyltransferase |
| PF02015 | 1 | Glyco_hydro_45 | Glycosyl hydrolase family 45 |
| PF02018 | 1 | CBM_4_9 | Carbohydrate binding domain |
| PF02020 | 2 | W2 | eIF4-gamma/eIF5/eIF2-epsilon |
| PF02036 | 2 | SCP2 | SCP-2 sterol transfer family |
| PF02037 | 3 | SAP | SAP domain |
| PF02040 | 1 | ArsB | Arsenical pump membrane protein |
| PF02045 | 1 | CBFB_NFYA | CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B |
| PF02046 | 1 | COX6A | Cytochrome c oxidase subunit VIa |
| PF02055 | 2 | Glyco_hydro_30 | Glycosyl hydrolase family 30 TIM-barrel domain |
| PF02064 | 1 | MAS20 | MAS20 protein import receptor |
| PF02065 | 1 | Melibiase | Melibiase |
| PF02076 | 1 | STE3 | Pheromone A receptor |
| PF02077 | 1 | SURF4 | SURF4 family |
| PF02089 | 1 | Palm_thioest | Palmitoyl protein thioesterase |
| PF02096 | 1 | 60KD_IMP | 60Kd inner membrane protein |
| PF02100 | 1 | ODC_AZ | Ornithine decarboxylase antizyme |
| PF02102 | 8 | Peptidase_M35 | Deuterolysin metalloprotease (M35) family |
| PF02104 | 1 | SURF1 | SURF1 family |
| PF02109 | 1 | DAD | DAD family |
| PF02110 | 1 | HK | Hydroxyethylthiazole kinase family |
| PF02112 | 2 | PDEase_II | cAMP phosphodiesterases class-II |
| PF02114 | 1 | Phosducin | Phosducin |
| PF02115 | 1 | Rho_GDI | RHO protein GDP dissociation inhibitor |
| PF02116 | 1 | STE2 | Fungal pheromone mating factor STE2 GPCR |
| PF02127 | 2 | Peptidase_M18 | Aminopeptidase I zinc metalloprotease (M18) |
| PF02128 | 2 | Peptidase_M36 | Fungalysin metallopeptidase (M36) |
| PF02129 | 5 | Peptidase_S15 | X-Pro dipeptidyl-peptidase (S15 family) |
| PF02133 | 14 | Transp_cyt_pur | Permease for cytosine/purines, uracil, thiamine, allantoin |
| PF02136 | 2 | NTF2 | Nuclear transport factor 2 (NTF2) domain |
| PF02137 | 1 | A_deamin | Adenosine-deaminase (editase) domain |
| PF02138 | 1 | Beach | Beige/BEACH domain |
| PF02141 | 2 | DENN | DENN (AEX-3) domain |
| PF02142 | 2 | MGS | MGS-like domain |
| PF02144 | 1 | Rad1 | Repair protein Rad1/Rec1/Rad17 |
| PF02145 | 1 | Rap_GAP | Rap/ran-GAP |
| PF02146 | 9 | SIR2 | Sir2 family |
| PF02148 | 4 | zf-UBP | Zn-finger in ubiquitin-hydrolases and other protein |
| PF02149 | 1 | KA1 | Kinase associated domain 1 |
| PF02150 | 1 | RNA_POL_M_15KD | RNA polymerases M/15 Kd subunit |
| PF02152 | 1 | FolB | Dihydroneopterin aldolase |
| PF02157 | 1 | Man-6-P_recep | Mannose-6-phosphate receptor |
| PF02163 | 1 | Peptidase_M50 | Peptidase family M50 |
| PF02167 | 1 | Cytochrom_C1 | Cytochrome C1 family |
| PF02170 | 2 | PAZ | PAZ domain |
| PF02171 | 4 | Piwi | Piwi domain |
| PF02176 | 1 | zf-TRAF | TRAF-type zinc finger |
| PF02179 | 1 | BAG | BAG domain |
| PF02181 | 1 | FH2 | Formin Homology 2 Domain |
| PF02184 | 2 | HAT | HAT (Half-A-TPR) repeat |
| PF02185 | 1 | HR1 | Hr1 repeat |
| PF02186 | 1 | TFIIE_beta | TFIIE beta subunit core domain |
| PF02187 | 1 | GAS2 | Growth-Arrest-Specific Protein 2 Domain |
| PF02190 | 3 | LON_substr_bdg | ATP-dependent protease La (LON) substrate-binding domain |
| PF02194 | 3 | PXA | PXA domain |
| PF02200 | 1 | STE | STE like transcription factor |
| PF02201 | 2 | SWIB | SWIB/MDM2 domain |
| PF02204 | 3 | VPS9 | Vacuolar sorting protein 9 (VPS9) domain |
| PF02205 | 2 | WH2 | WH2 motif |
| PF02207 | 2 | zf-UBR | Putative zinc finger in N-recognin (UBR box) |
| PF02212 | 4 | GED | Dynamin GTPase effector domain |
| PF02213 | 2 | GYF | GYF domain |
| PF02214 | 2 | BTB_2 | BTB/POZ domain |
| PF02219 | 2 | MTHFR | Methylenetetrahydrofolate reductase |
| PF02221 | 1 | E1_DerP2_DerF2 | ML domain |
| PF02222 | 6 | ATP-grasp | ATP-grasp domain |
| PF02223 | 1 | Thymidylate_kin | Thymidylate kinase |
| PF02225 | 9 | PA | PA domain |
| PF02229 | 1 | PC4 | Transcriptional Coactivator p15 (PC4) |
| PF02230 | 6 | Abhydrolase_2 | Phospholipase/Carboxylesterase |
| PF02233 | 1 | PNTB | NAD(P) transhydrogenase beta subunit |
| PF02238 | 1 | COX7a | Cytochrome c oxidase subunit VII |
| PF02239 | 1 | Cytochrom_D1 | Cytochrome D1 heme domain |
| PF02244 | 1 | Propep_M14 | Carboxypeptidase activation peptide |
| PF02257 | 1 | RFX_DNA_binding | RFX DNA-binding domain |
| PF02259 | 4 | FAT | FAT domain |
| PF02260 | 3 | FATC | FATC domain |
| PF02263 | 1 | GBP | Guanylate-binding protein, N-terminal domain |
| PF02265 | 3 | S1-P1_nuclease | S1/P1 Nuclease |
| PF02268 | 1 | TFIIA_gamma_N | Transcription initiation factor IIA, gamma subunit, helical domain |
| PF02269 | 3 | TFIID-18kDa | Transcription initiation factor IID, 18kD subunit |
| PF02270 | 1 | TFIIF_beta | TFIIF, beta subunit HTH domain |
| PF02271 | 1 | UCR_14kD | Ubiquinol-cytochrome C reductase complex 14kD subunit |
| PF02272 | 1 | DHHA1 | DHHA1 domain |
| PF02278 | 1 | Lyase_8 | Polysaccharide lyase family 8, super-sandwich domain |
| PF02284 | 1 | COX5A | Cytochrome c oxidase subunit Va |
| PF02290 | 1 | SRP14 | Signal recognition particle 14kD protein |
| PF02291 | 1 | TFIID-31kDa | Transcription initiation factor IID, 31kD subunit |
| PF02296 | 1 | Alpha_adaptin_C | Alpha adaptin AP2, C-terminal domain |
| PF02297 | 2 | COX6B | Cytochrome oxidase c subunit VIb |
| PF02301 | 1 | HORMA | HORMA domain |
| PF02305 | 2 | Phage_F | Capsid protein (F protein) |
| PF02311 | 1 | AraC_binding | AraC-like ligand binding domain |
| PF02317 | 3 | Octopine_DH | NAD/NADP octopine/nopaline dehydrogenase, alpha-helical domain |
| PF02320 | 1 | UCR_hinge | Ubiquinol-cytochrome C reductase hinge protein |
| PF02330 | 1 | MAM33 | Mitochondrial glycoprotein |
| PF02333 | 1 | Phytase | Phytase |
| PF02338 | 2 | OTU | OTU-like cysteine protease |
| PF02347 | 2 | GDC-P | Glycine cleavage system P-protein |
| PF02353 | 14 | CMAS | Mycolic acid cyclopropane synthetase |
| PF02358 | 3 | Trehalose_PPase | Trehalose-phosphatase |
| PF02359 | 1 | CDC48_N | Cell division protein 48 (CDC48), N-terminal domain |
| PF02364 | 2 | Glucan_synthase | 1,3-beta-glucan synthase component |
| PF02366 | 3 | PMT | Dolichyl-phosphate-mannose-protein mannosyltransferase |
| PF02373 | 5 | JmjC | JmjC domain, hydroxylase |
| PF02374 | 1 | ArsA_ATPase | Anion-transporting ATPase |
| PF02375 | 2 | JmjN | jmjN domain |
| PF02383 | 4 | Syja_N | SacI homology domain |
| PF02386 | 6 | TrkH | Cation transport protein |
| PF02390 | 2 | Methyltransf_4 | Putative methyltransferase |
| PF02391 | 1 | MoaE | MoaE protein |
| PF02403 | 2 | Seryl_tRNA_N | Seryl-tRNA synthetase N-terminal domain |
| PF02410 | 1 | RsfS | Ribosomal silencing factor during starvation |
| PF02417 | 8 | Chromate_transp | Chromate transporter |
| PF02421 | 4 | FeoB_N | Ferrous iron transport protein B |
| PF02434 | 4 | Fringe | Fringe-like |
| PF02436 | 1 | PYC_OADA | Conserved carboxylase domain |
| PF02441 | 3 | Flavoprotein | Flavoprotein |
| PF02449 | 2 | Glyco_hydro_42 | Beta-galactosidase |
| PF02450 | 1 | LCAT | Lecithin:cholesterol acyltransferase |
| PF02453 | 1 | Reticulon | Reticulon |
| PF02460 | 4 | Patched | Patched family |
| PF02463 | 7 | SMC_N | RecF/RecN/SMC N terminal domain |
| PF02466 | 4 | Tim17 | Tim17/Tim22/Tim23/Pmp24 family |
| PF02469 | 5 | Fasciclin | Fasciclin domain |
| PF02475 | 2 | Met_10 | Met-10+ like-protein |
| PF02487 | 1 | CLN3 | CLN3 protein |
| PF02492 | 6 | cobW | CobW/HypB/UreG, nucleotide-binding domain |
| PF02502 | 1 | LacAB_rpiB | Ribose/Galactose Isomerase |
| PF02515 | 6 | CoA_transf_3 | CoA-transferase family III |
| PF02516 | 1 | STT3 | Oligosaccharyl transferase STT3 subunit |
| PF02517 | 1 | Rce1-like | Type II CAAX prenyl endopeptidase Rce1-like |
| PF02518 | 22 | HATPase_c | Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase |
| PF02522 | 1 | Antibiotic_NAT | Aminoglycoside 3-N-acetyltransferase |
| PF02525 | 1 | Flavodoxin_2 | Flavodoxin-like fold |
| PF02535 | 12 | Zip | ZIP Zinc transporter |
| PF02537 | 2 | CRCB | CrcB-like protein, Camphor Resistance (CrcB) |
| PF02538 | 3 | Hydantoinase_B | Hydantoinase B/oxoprolinase |
| PF02540 | 2 | NAD_synthase | NAD synthase |
| PF02541 | 1 | Ppx-GppA | Ppx/GppA phosphatase family |
| PF02544 | 4 | Steroid_dh | 3-oxo-5-alpha-steroid 4-dehydrogenase |
| PF02545 | 1 | Maf | Maf-like protein |
| PF02547 | 1 | Queuosine_synth | Queuosine biosynthesis protein |
| PF02548 | 1 | Pantoate_transf | Ketopantoate hydroxymethyltransferase |
| PF02551 | 1 | Acyl_CoA_thio | Acyl-CoA thioesterase |
| PF02558 | 4 | ApbA | Ketopantoate reductase PanE/ApbA |
| PF02560 | 1 | Cyanate_lyase | Cyanate lyase C-terminal domain |
| PF02567 | 3 | PhzC-PhzF | Phenazine biosynthesis-like protein |
| PF02569 | 1 | Pantoate_ligase | Pantoate-beta-alanine ligase |
| PF02574 | 1 | S-methyl_trans | Homocysteine S-methyltransferase |
| PF02580 | 1 | Tyr_Deacylase | D-Tyr-tRNA(Tyr) deacylase |
| PF02581 | 1 | TMP-TENI | Thiamine monophosphate synthase |
| PF02582 | 3 | DUF155 | RMND1/Sif2-Sif3/Mrx10, DUF155 |
| PF02585 | 2 | PIG-L | GlcNAc-PI de-N-acetylase |
| PF02586 | 1 | SRAP | SOS response associated peptidase (SRAP) |
| PF02594 | 1 | DUF167 | Uncharacterised ACR, YggU family COG1872 |
| PF02595 | 2 | Gly_kinase | Glycerate kinase family |
| PF02597 | 1 | ThiS | ThiS family |
| PF02598 | 1 | Methyltrn_RNA_3 | Putative RNA methyltransferase |
| PF02602 | 1 | HEM4 | Uroporphyrinogen-III synthase HemD |
| PF02615 | 1 | Ldh_2 | Malate/L-lactate dehydrogenase |
| PF02617 | 1 | ClpS | ATP-dependent Clp protease adaptor protein ClpS |
| PF02626 | 2 | CT_A_B | Carboxyltransferase domain, subdomain A and B |
| PF02627 | 3 | CMD | Carboxymuconolactone decarboxylase family |
| PF02628 | 1 | COX15-CtaA | Cytochrome oxidase assembly protein |
| PF02629 | 4 | CoA_binding | CoA binding domain |
| PF02630 | 1 | SCO1-SenC | SCO1/SenC |
| PF02636 | 2 | Methyltransf_28 | Putative S-adenosyl-L-methionine-dependent methyltransferase |
| PF02637 | 1 | GatB_Yqey | GatB domain |
| PF02655 | 1 | ATP-grasp_3 | ATP-grasp domain |
| PF02656 | 5 | DUF202 | Domain of unknown function (DUF202) |
| PF02661 | 5 | Fic | Fic/DOC family |
| PF02666 | 5 | PS_Dcarbxylase | Phosphatidylserine decarboxylase |
| PF02668 | 11 | TauD | Taurine catabolism dioxygenase TauD, TfdA family |
| PF02671 | 2 | PAH | Paired amphipathic helix repeat |
| PF02676 | 1 | TYW3 | Methyltransferase TYW3 |
| PF02678 | 2 | Pirin | Pirin |
| PF02679 | 1 | ComA | (2R)-phospho-3-sulfolactate synthase (ComA) |
| PF02682 | 2 | CT_C_D | Carboxyltransferase domain, subdomain C and D |
| PF02686 | 1 | Glu-tRNAGln | Glu-tRNAGln amidotransferase C subunit |
| PF02696 | 1 | SelO | Protein adenylyltransferase SelO |
| PF02698 | 2 | DUF218 | DUF218 domain |
| PF02705 | 1 | K_trans | K+ potassium transporter |
| PF02714 | 5 | RSN1_7TM | Calcium-dependent channel, 7TM region, putative phosphate |
| PF02719 | 8 | Polysacc_synt_2 | Polysaccharide biosynthesis protein |
| PF02724 | 1 | CDC45 | CDC45-like protein |
| PF02727 | 5 | Cu_amine_oxidN2 | Copper amine oxidase, N2 domain |
| PF02728 | 3 | Cu_amine_oxidN3 | Copper amine oxidase, N3 domain |
| PF02729 | 2 | OTCace_N | Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain |
| PF02731 | 1 | SKIP_SNW | SKIP/SNW domain |
| PF02732 | 3 | ERCC4 | ERCC4 domain |
| PF02733 | 3 | Dak1 | Dak1 domain |
| PF02734 | 3 | Dak2 | DAK2 domain |
| PF02735 | 2 | Ku | Ku70/Ku80 beta-barrel domain |
| PF02736 | 1 | Myosin_N | Myosin N-terminal SH3-like domain |
| PF02737 | 8 | 3HCDH_N | 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain |
| PF02738 | 1 | MoCoBD_1 | Molybdopterin cofactor-binding domain |
| PF02744 | 1 | GalP_UDP_tr_C | Galactose-1-phosphate uridyl transferase, C-terminal domain |
| PF02746 | 3 | MR_MLE_N | Mandelate racemase / muconate lactonizing enzyme, N-terminal domain |
| PF02747 | 1 | PCNA_C | Proliferating cell nuclear antigen, C-terminal domain |
| PF02749 | 1 | QRPTase_N | Quinolinate phosphoribosyl transferase, N-terminal domain |
| PF02751 | 1 | TFIIA_gamma_C | Transcription initiation factor IIA, gamma subunit |
| PF02752 | 3 | Arrestin_C | Arrestin (or S-antigen), C-terminal domain |
| PF02765 | 2 | POT1 | Telomeric single stranded DNA binding POT1/CDC13 |
| PF02769 | 3 | AIRS_C | AIR synthase related protein, C-terminal domain |
| PF02770 | 11 | Acyl-CoA_dh_M | Acyl-CoA dehydrogenase, middle domain |
| PF02771 | 8 | Acyl-CoA_dh_N | Acyl-CoA dehydrogenase, N-terminal domain |
| PF02772 | 1 | S-AdoMet_synt_M | S-adenosylmethionine synthetase, central domain |
| PF02773 | 1 | S-AdoMet_synt_C | S-adenosylmethionine synthetase, C-terminal domain |
| PF02774 | 1 | Semialdhyde_dhC | Semialdehyde dehydrogenase, dimerisation domain |
| PF02775 | 6 | TPP_enzyme_C | Thiamine pyrophosphate enzyme, C-terminal TPP binding domain |
| PF02776 | 6 | TPP_enzyme_N | Thiamine pyrophosphate enzyme, N-terminal TPP binding domain |
| PF02777 | 3 | Sod_Fe_C | Iron/manganese superoxide dismutases, C-terminal domain |
| PF02779 | 7 | Transket_pyr | Transketolase, pyrimidine binding domain |
| PF02780 | 5 | Transketolase_C | Transketolase, C-terminal domain |
| PF02781 | 1 | G6PD_C | Glucose-6-phosphate dehydrogenase, C-terminal domain |
| PF02782 | 4 | FGGY_C | FGGY family of carbohydrate kinases, C-terminal domain |
| PF02784 | 1 | Orn_Arg_deC_N | Pyridoxal-dependent decarboxylase, pyridoxal binding domain |
| PF02785 | 5 | Biotin_carb_C | Biotin carboxylase C-terminal domain |
| PF02786 | 10 | CPSase_L_D2 | Carbamoyl-phosphate synthase L chain, ATP binding domain |
| PF02787 | 2 | CPSase_L_D3 | Carbamoyl-phosphate synthetase large chain, oligomerisation domain |
| PF02791 | 1 | DDT | DDT domain |
| PF02792 | 1 | Mago_nashi | Mago nashi protein |
| PF02797 | 1 | Chal_sti_synt_C | Chalcone and stilbene synthases, C-terminal domain |
| PF02798 | 15 | GST_N | Glutathione S-transferase, N-terminal domain |
| PF02799 | 1 | NMT_C | Myristoyl-CoA:protein N-myristoyltransferase, C-terminal domain |
| PF02800 | 1 | Gp_dh_C | Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain |
| PF02801 | 16 | Ketoacyl-synt_C | Beta-ketoacyl synthase, C-terminal domain |
| PF02803 | 6 | Thiolase_C | Thiolase, C-terminal domain |
| PF02805 | 1 | Ada_Zn_binding | Metal binding domain of Ada |
| PF02806 | 1 | Alpha-amylase_C | Alpha amylase, C-terminal all-beta domain |
| PF02809 | 2 | UIM | Ubiquitin interaction motif |
| PF02811 | 1 | PHP | PHP domain |
| PF02812 | 1 | ELFV_dehydrog_N | Glu/Leu/Phe/Val dehydrogenase, dimerisation domain |
| PF02815 | 3 | MIR | MIR domain |
| PF02817 | 3 | E3_binding | e3 binding domain |
| PF02823 | 1 | ATP-synt_DE_N | ATP synthase, Delta/Epsilon chain, beta-sandwich domain |
| PF02824 | 3 | TGS | TGS domain |
| PF02826 | 17 | 2-Hacid_dh_C | D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain |
| PF02833 | 1 | DHHA2 | DHHA2 domain |
| PF02836 | 6 | Glyco_hydro_2_C | Glycosyl hydrolases family 2, TIM barrel domain |
| PF02837 | 4 | Glyco_hydro_2_N | Glycosyl hydrolases family 2, sugar binding domain |
| PF02838 | 5 | Glyco_hydro_20b | Glycosyl hydrolase family 20, domain 2 |
| PF02840 | 1 | Prp18 | Prp18 domain |
| PF02843 | 1 | GARS_C | Phosphoribosylglycinamide synthetase, C domain |
| PF02844 | 2 | GARS_N | Phosphoribosylglycinamide synthetase, N domain |
| PF02845 | 5 | CUE | CUE domain |
| PF02847 | 1 | MA3 | MA3 domain |
| PF02852 | 3 | Pyr_redox_dim | Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain |
| PF02854 | 5 | MIF4G | MIF4G domain |
| PF02861 | 2 | Clp_N | Clp amino terminal domain, pathogenicity island component |
| PF02862 | 3 | DDHD | DDHD domain |
| PF02866 | 3 | Ldh_1_C | lactate/malate dehydrogenase, alpha/beta C-terminal domain |
| PF02867 | 1 | Ribonuc_red_lgC | Ribonucleotide reductase, barrel domain |
| PF02868 | 1 | Peptidase_M4_C | Thermolysin metallopeptidase, alpha-helical domain |
| PF02872 | 3 | 5_nucleotid_C | 5'-nucleotidase, C-terminal domain |
| PF02874 | 4 | ATP-synt_ab_N | ATP synthase alpha/beta family, beta-barrel domain |
| PF02877 | 1 | PARP_reg | Poly(ADP-ribose) polymerase, regulatory domain |
| PF02878 | 3 | PGM_PMM_I | Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I |
| PF02879 | 1 | PGM_PMM_II | Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II |
| PF02880 | 1 | PGM_PMM_III | Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III |
| PF02881 | 2 | SRP54_N | SRP54-type protein, helical bundle domain |
| PF02882 | 2 | THF_DHG_CYH_C | Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain |
| PF02883 | 3 | Alpha_adaptinC2 | Adaptin C-terminal domain |
| PF02885 | 1 | Glycos_trans_3N | Glycosyl transferase family, helical bundle domain |
| PF02887 | 1 | PK_C | Pyruvate kinase, alpha/beta domain |
| PF02889 | 5 | Sec63 | Sec63 Brl domain |
| PF02891 | 2 | zf-MIZ | MIZ/SP-RING zinc finger |
| PF02893 | 3 | GRAM | GRAM domain |
| PF02894 | 9 | GFO_IDH_MocA_C | Oxidoreductase family, C-terminal alpha/beta domain |
| PF02896 | 1 | PEP-utilizers_C | PEP-utilising enzyme, PEP-binding domain |
| PF02897 | 1 | Peptidase_S9_N | Prolyl oligopeptidase, N-terminal beta-propeller domain |
| PF02900 | 1 | LigB | Catalytic LigB subunit of aromatic ring-opening dioxygenase |
| PF02902 | 5 | Peptidase_C48 | Ulp1 protease family, C-terminal catalytic domain |
| PF02906 | 1 | Fe_hyd_lg_C | Iron only hydrogenase large subunit, C-terminal domain |
| PF02910 | 1 | Succ_DH_flav_C | Fumarate reductase flavoprotein C-term |
| PF02911 | 1 | Formyl_trans_C | Formyl transferase, C-terminal domain |
| PF02913 | 3 | FAD-oxidase_C | FAD linked oxidases, C-terminal domain |
| PF02919 | 1 | Topoisom_I_N | Eukaryotic DNA topoisomerase I, DNA binding fragment |
| PF02921 | 1 | UCR_TM | Ubiquinol cytochrome reductase transmembrane region |
| PF02922 | 1 | CBM_48 | Carbohydrate-binding module 48 (Isoamylase N-terminal domain) |
| PF02925 | 1 | gpD | Bacteriophage scaffolding protein D |
| PF02926 | 1 | THUMP | THUMP domain |
| PF02928 | 1 | zf-C5HC2 | C5HC2 zinc finger |
| PF02929 | 2 | Bgal_small_N | Beta galactosidase small chain |
| PF02933 | 2 | CDC48_2 | Cell division protein 48 (CDC48), domain 2 |
| PF02934 | 1 | GatB_N | GatB/GatE catalytic domain |
| PF02935 | 1 | COX7C | Cytochrome c oxidase subunit VIIc |
| PF02936 | 2 | COX4 | Cytochrome c oxidase subunit IV |
| PF02939 | 1 | UcrQ | UcrQ family |
| PF02940 | 1 | mRNA_triPase | mRNA capping enzyme, beta chain |
| PF02953 | 4 | zf-Tim10_DDP | Tim10/DDP family zinc finger |
| PF02958 | 3 | EcKL | Ecdysteroid kinase-like family |
| PF02966 | 1 | DIM1 | Mitosis protein DIM1 |
| PF02969 | 2 | TAF | TATA box binding protein associated factor (TAF) |
| PF02970 | 2 | TBCA | Tubulin binding cofactor A |
| PF02978 | 1 | SRP_SPB | Signal peptide binding domain |
| PF02984 | 3 | Cyclin_C | Cyclin, C-terminal domain |
| PF02985 | 6 | HEAT | HEAT repeat |
| PF02990 | 2 | EMP70 | Endomembrane protein 70 |
| PF02991 | 1 | ATG8 | Autophagy protein Atg8 ubiquitin like |
| PF02996 | 2 | Prefoldin | Prefoldin subunit |
| PF03006 | 12 | HlyIII | Haemolysin-III related |
| PF03009 | 5 | GDPD | Glycerophosphoryl diester phosphodiesterase family |
| PF03028 | 1 | Dynein_heavy | Dynein heavy chain region D6 P-loop domain |
| PF03029 | 3 | ATP_bind_1 | Conserved hypothetical ATP binding protein |
| PF03031 | 5 | NIF | NLI interacting factor-like phosphatase |
| PF03033 | 5 | Glyco_transf_28 | Glycosyltransferase family 28 N-terminal domain |
| PF03051 | 1 | Peptidase_C1_2 | Peptidase C1-like family |
| PF03055 | 1 | RPE65 | Retinal pigment epithelial membrane protein |
| PF03060 | 7 | NMO | Nitronate monooxygenase |
| PF03061 | 7 | 4HBT | Thioesterase superfamily |
| PF03062 | 5 | MBOAT | MBOAT, membrane-bound O-acyltransferase family |
| PF03068 | 3 | PAD | Protein-arginine deiminase (PAD) |
| PF03069 | 3 | FmdA_AmdA | Acetamidase/Formamidase family |
| PF03070 | 2 | TENA_THI-4 | TENA/THI-4/PQQC family |
| PF03073 | 1 | TspO_MBR | TspO/MBR family |
| PF03074 | 1 | GCS | Glutamate-cysteine ligase |
| PF03079 | 1 | ARD | ARD/ARD' family |
| PF03080 | 2 | Neprosin | Neprosin |
| PF03081 | 1 | Exo70 | Exo70 exocyst complex subunit |
| PF03095 | 2 | PTPA | Phosphotyrosyl phosphate activator (PTPA) protein |
| PF03096 | 3 | Ndr | Ndr family |
| PF03097 | 2 | BRO1 | BRO1-like domain |
| PF03098 | 2 | An_peroxidase | Animal haem peroxidase |
| PF03099 | 1 | BPL_LplA_LipB | Biotin/lipoate A/B protein ligase family |
| PF03101 | 5 | FAR1 | FAR1 DNA-binding domain |
| PF03104 | 5 | DNA_pol_B_exo1 | DNA polymerase family B, exonuclease domain |
| PF03105 | 8 | SPX | SPX domain |
| PF03109 | 10 | ABC1 | ABC1 atypical kinase-like domain |
| PF03114 | 5 | BAR | BAR domain |
| PF03124 | 2 | EXS | EXS family |
| PF03126 | 1 | Plus-3 | Plus-3 domain |
| PF03127 | 4 | GAT | GAT domain |
| PF03129 | 6 | HGTP_anticodon | Anticodon binding domain |
| PF03130 | 3 | HEAT_PBS | PBS lyase HEAT-like repeat |
| PF03131 | 6 | bZIP_Maf | bZIP Maf transcription factor |
| PF03133 | 1 | TTL | Tubulin-tyrosine ligase family |
| PF03134 | 2 | TB2_DP1_HVA22 | TB2/DP1, HVA22 family |
| PF03141 | 1 | Methyltransf_29 | Putative S-adenosyl-L-methionine-dependent methyltransferase |
| PF03142 | 9 | Chitin_synth_2 | Chitin synthase |
| PF03143 | 5 | GTP_EFTU_D3 | Elongation factor Tu C-terminal domain |
| PF03144 | 10 | GTP_EFTU_D2 | Elongation factor Tu domain 2 |
| PF03147 | 1 | FDX-ACB | Ferredoxin-fold anticodon binding domain |
| PF03151 | 7 | TPT | Triose-phosphate Transporter family |
| PF03152 | 2 | UFD1 | Ubiquitin fusion degradation protein UFD1 |
| PF03153 | 2 | TFIIA | Transcription factor IIA, alpha/beta subunit |
| PF03155 | 3 | Alg6_Alg8 | ALG6, ALG8 glycosyltransferase family |
| PF03159 | 2 | XRN_N | XRN 5'-3' exonuclease N-terminus |
| PF03162 | 1 | Y_phosphatase2 | Tyrosine phosphatase family |
| PF03167 | 2 | UDG | Uracil DNA glycosylase superfamily |
| PF03169 | 25 | OPT | OPT oligopeptide transporter protein |
| PF03171 | 13 | 2OG-FeII_Oxy | 2OG-Fe(II) oxygenase superfamily |
| PF03176 | 1 | MMPL | MMPL family |
| PF03177 | 2 | Nucleoporin_C | Non-repetitive/WGA-negative nucleoporin C-terminal |
| PF03178 | 3 | CPSF_A | CPSF A subunit region |
| PF03179 | 1 | V-ATPase_G | Vacuolar (H+)-ATPase G subunit |
| PF03184 | 6 | DDE_1 | DDE superfamily endonuclease |
| PF03188 | 3 | Cytochrom_B561 | Eukaryotic cytochrome b561 |
| PF03190 | 1 | Thioredox_DsbH | Protein of unknown function, DUF255 |
| PF03193 | 1 | RsgA_GTPase | RsgA GTPase |
| PF03194 | 1 | LUC7 | LUC7 N_terminus |
| PF03198 | 5 | Glyco_hydro_72 | Glucanosyltransferase |
| PF03199 | 1 | GSH_synthase | Eukaryotic glutathione synthase |
| PF03200 | 3 | Glyco_hydro_63 | Glycosyl hydrolase family 63 C-terminal domain |
| PF03208 | 1 | PRA1 | PRA1 family protein |
| PF03209 | 2 | PUCC | PUCC protein |
| PF03215 | 3 | Rad17 | Rad17 P-loop domain |
| PF03221 | 7 | HTH_Tnp_Tc5 | Tc5 transposase DNA-binding domain |
| PF03223 | 1 | V-ATPase_C | V-ATPase subunit C |
| PF03224 | 1 | V-ATPase_H_N | V-ATPase subunit H |
| PF03226 | 2 | Yippee-Mis18 | Yippee zinc-binding/DNA-binding /Mis18, centromere assembly |
| PF03227 | 1 | GILT | Gamma interferon inducible lysosomal thiol reductase (GILT) |
| PF03232 | 1 | COQ7 | Ubiquinone biosynthesis protein COQ7 |
| PF03234 | 1 | CDC37_N | Cdc37 N terminal kinase binding |
| PF03239 | 1 | FTR1 | Iron permease FTR1 family |
| PF03243 | 2 | MerB | Alkylmercury lyase |
| PF03248 | 1 | Rer1 | Rer1 family |
| PF03256 | 1 | ANAPC10 | Anaphase-promoting complex, subunit 10 (APC10) |
| PF03259 | 1 | Robl_LC7 | Roadblock/LC7 domain |
| PF03271 | 1 | EB1 | EB1-like C-terminal motif |
| PF03291 | 2 | Pox_MCEL | mRNA capping enzyme |
| PF03297 | 1 | Ribosomal_S25 | S25 ribosomal protein |
| PF03308 | 1 | MeaB | Methylmalonyl Co-A mutase-associated GTPase MeaB |
| PF03311 | 1 | Cornichon | Cornichon protein |
| PF03328 | 5 | HpcH_HpaI | HpcH/HpaI aldolase/citrate lyase family |
| PF03330 | 1 | DPBB_1 | Lytic transglycolase |
| PF03332 | 1 | PMM | Eukaryotic phosphomannomutase |
| PF03343 | 1 | SART-1 | SART-1 family |
| PF03345 | 1 | DDOST_48kD | Oligosaccharyltransferase 48 kDa subunit beta |
| PF03348 | 1 | Serinc | Serine incorporator (Serinc) |
| PF03357 | 6 | Snf7 | Snf7 |
| PF03358 | 6 | FMN_red | NADPH-dependent FMN reductase |
| PF03364 | 1 | Polyketide_cyc | Polyketide cyclase / dehydrase and lipid transport |
| PF03366 | 2 | YEATS | YEATS family |
| PF03367 | 2 | zf-ZPR1 | ZPR1 zinc-finger domain |
| PF03368 | 2 | Dicer_dimer | Dicer dimerisation domain |
| PF03370 | 1 | CBM_21 | Carbohydrate/starch-binding module (family 21) |
| PF03371 | 1 | PRP38 | PRP38 family |
| PF03372 | 22 | Exo_endo_phos | Endonuclease/Exonuclease/phosphatase family |
| PF03378 | 1 | CAS_CSE1 | CAS/CSE protein, C-terminus |
| PF03381 | 1 | CDC50 | LEM3 (ligand-effect modulator 3) family / CDC50 family |
| PF03388 | 2 | Lectin_leg-like | Legume-like lectin family |
| PF03398 | 1 | Ist1 | Regulator of Vps4 activity in the MVB pathway |
| PF03399 | 2 | SAC3_GANP | SAC3/GANP family |
| PF03403 | 7 | PAF-AH_p_II | Platelet-activating factor acetylhydrolase, isoform II |
| PF03404 | 6 | Mo-co_dimer | Mo-co oxidoreductase dimerisation domain |
| PF03407 | 1 | Nucleotid_trans | Nucleotide-diphospho-sugar transferase |
| PF03416 | 1 | Peptidase_C54 | Peptidase family C54 |
| PF03417 | 1 | AAT | Acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase |
| PF03435 | 5 | Sacchrp_dh_NADP | Saccharopine dehydrogenase NADP binding domain |
| PF03439 | 1 | Spt5-NGN | Early transcription elongation factor of RNA pol II, NGN section |
| PF03441 | 3 | FAD_binding_7 | FAD binding domain of DNA photolyase |
| PF03443 | 3 | AA9 | Auxiliary Activity family 9 (formerly GH61) |
| PF03446 | 18 | NAD_binding_2 | NAD binding domain of 6-phosphogluconate dehydrogenase |
| PF03447 | 2 | NAD_binding_3 | Homoserine dehydrogenase, NAD binding domain |
| PF03450 | 1 | CO_deh_flav_C | CO dehydrogenase flavoprotein C-terminal domain |
| PF03452 | 3 | Anp1 | Anp1 |
| PF03453 | 1 | MoeA_N | MoeA N-terminal region (domain I and II) |
| PF03454 | 1 | MoeA_C | MoeA C-terminal region (domain IV) |
| PF03455 | 1 | dDENN | dDENN domain |
| PF03456 | 2 | uDENN | uDENN domain |
| PF03460 | 3 | NIR_SIR_ferr | Nitrite/Sulfite reductase ferredoxin-like half domain |
| PF03462 | 1 | PCRF | PCRF domain |
| PF03463 | 2 | eRF1_1 | eRF1 domain 1 |
| PF03464 | 2 | eRF1_2 | eRF1 domain 2 |
| PF03465 | 2 | eRF1_3 | eRF1 domain 3 |
| PF03467 | 1 | Smg4_UPF3 | Smg-4/UPF3 family |
| PF03473 | 5 | MOSC | MOSC domain |
| PF03475 | 1 | 3-alpha | 3-alpha domain |
| PF03476 | 4 | MOSC_N | MOSC N-terminal beta barrel domain |
| PF03477 | 1 | ATP-cone | ATP cone domain |
| PF03481 | 1 | Sua5_C | Threonylcarbamoyl-AMP synthase, C-terminal domain |
| PF03483 | 1 | B3_4 | B3/4 domain |
| PF03484 | 1 | B5 | tRNA synthetase B5 domain |
| PF03486 | 3 | HI0933_like | HI0933-like protein |
| PF03501 | 1 | S10_plectin | Plectin/S10 domain |
| PF03517 | 1 | Voldacs | Regulator of volume decrease after cellular swelling |
| PF03522 | 2 | SLC12 | Solute carrier family 12 |
| PF03531 | 1 | SSrecog | Structure-specific recognition protein (SSRP1) |
| PF03537 | 1 | Glyco_hydro_114 | Glycoside-hydrolase family GH114 |
| PF03540 | 3 | TFIID_30kDa | Transcription initiation factor TFIID 23-30kDa subunit |
| PF03542 | 1 | Tuberin | Tuberin |
| PF03547 | 1 | Mem_trans | Membrane transport protein |
| PF03552 | 1 | Cellulose_synt | Cellulose synthase |
| PF03556 | 1 | Cullin_binding | Cullin binding |
| PF03561 | 4 | Allantoicase | Allantoicase repeat |
| PF03568 | 1 | Peptidase_C50 | Peptidase family C50 |
| PF03571 | 2 | Peptidase_M49 | Peptidase family M49 |
| PF03575 | 2 | Peptidase_S51 | Peptidase family S51 |
| PF03576 | 1 | Peptidase_S58 | Peptidase family S58 |
| PF03583 | 4 | LIP | Secretory lipase |
| PF03587 | 1 | EMG1 | EMG1/NEP1 methyltransferase |
| PF03595 | 5 | SLAC1 | Voltage-dependent anion channel |
| PF03600 | 1 | CitMHS | Citrate transporter |
| PF03604 | 1 | DNA_RNApol_7kD | DNA directed RNA polymerase, 7 kDa subunit |
| PF03619 | 2 | Solute_trans_a | Organic solute transporter Ostalpha |
| PF03630 | 1 | Fumble | Fumble |
| PF03632 | 1 | Glyco_hydro_65m | Glycosyl hydrolase family 65 central catalytic domain |
| PF03635 | 1 | Vps35 | Vacuolar protein sorting-associated protein 35 |
| PF03636 | 1 | Glyco_hydro_65N | Glycosyl hydrolase family 65, N-terminal domain |
| PF03637 | 4 | Mob1_phocein | Mob1/phocein family |
| PF03639 | 1 | Glyco_hydro_81 | Glycosyl hydrolase family 81 N-terminal domain |
| PF03641 | 1 | Lysine_decarbox | Possible lysine decarboxylase |
| PF03643 | 1 | Vps26 | Vacuolar protein sorting-associated protein 26 |
| PF03645 | 1 | Tctex-1 | Tctex-1 family |
| PF03647 | 1 | Tmemb_14 | Transmembrane proteins 14C |
| PF03650 | 3 | MPC | Mitochondrial pyruvate carriers |
| PF03656 | 1 | Pam16 | Pam16 |
| PF03657 | 1 | UPF0113 | UPF0113 PUA domain |
| PF03659 | 1 | Glyco_hydro_71 | Glycosyl hydrolase family 71 |
| PF03660 | 1 | PHF5 | PHF5-like protein |
| PF03661 | 1 | TMEM33_Pom33 | Transmembrane protein 33/Nucleoporin POM33 |
| PF03663 | 18 | Glyco_hydro_76 | Glycosyl hydrolase family 76 |
| PF03666 | 1 | NPR3 | Nitrogen Permease regulator of amino acid transport activity 3 |
| PF03669 | 1 | ASTER | PAT complex subunit Asterix |
| PF03676 | 2 | PHAF1 | Phagosome assembly factor 1 |
| PF03690 | 1 | UPF0160 | Uncharacterised protein family (UPF0160) |
| PF03694 | 1 | Erg28 | Erg28 like protein |
| PF03702 | 3 | AnmK | Anhydro-N-acetylmuramic acid kinase |
| PF03707 | 2 | MHYT | Bacterial signalling protein N terminal repeat |
| PF03715 | 1 | Noc2 | Noc2p family |
| PF03718 | 1 | Glyco_hydro_49 | Glycosyl hydrolase family 49 |
| PF03719 | 2 | Ribosomal_S5_C | Ribosomal protein S5, C-terminal domain |
| PF03720 | 1 | UDPG_MGDP_dh_C | UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain |
| PF03721 | 3 | UDPG_MGDP_dh_N | UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain |
| PF03725 | 2 | RNase_PH_C | 3' exoribonuclease family, domain 2 |
| PF03727 | 5 | Hexokinase_2 | Hexokinase |
| PF03730 | 1 | Ku_C | Ku70/Ku80 C-terminal arm |
| PF03731 | 2 | Ku_N | Ku70/Ku80 N-terminal alpha/beta domain |
| PF03733 | 1 | YccF | Inner membrane component domain |
| PF03737 | 2 | RraA-like | Aldolase/RraA |
| PF03746 | 1 | LamB_YcsF | LamB/YcsF family |
| PF03747 | 2 | ADP_ribosyl_GH | ADP-ribosylglycohydrolase |
| PF03764 | 3 | EFG_IV | Elongation factor G, domain IV |
| PF03765 | 5 | CRAL_TRIO_N | CRAL/TRIO, N-terminal domain |
| PF03770 | 2 | IPK | Inositol polyphosphate kinase |
| PF03781 | 3 | FGE-sulfatase | Sulfatase-modifying factor enzyme 1 |
| PF03795 | 4 | YCII | YCII-related domain |
| PF03796 | 1 | DnaB_C | DnaB-like helicase C terminal domain |
| PF03798 | 6 | TRAM_LAG1_CLN8 | TLC domain |
| PF03800 | 3 | Nuf2 | Nuf2 family |
| PF03801 | 1 | Ndc80_HEC | HEC/Ndc80p family |
| PF03807 | 13 | F420_oxidored | NADP oxidoreductase coenzyme F420-dependent |
| PF03810 | 8 | IBN_N | Importin-beta N-terminal domain |
| PF03813 | 1 | Nrap | Nrap protein domain 1 |
| PF03815 | 1 | LCCL | LCCL domain |
| PF03820 | 2 | SFXNs | Sideroflexins |
| PF03824 | 1 | NicO | High-affinity nickel-transport protein |
| PF03828 | 3 | PAP_assoc | Cid1 family poly A polymerase |
| PF03834 | 1 | Rad10 | Binding domain of DNA repair protein Ercc1 (rad10/Swi10) |
| PF03835 | 3 | Rad4 | Rad4 transglutaminase-like domain |
| PF03836 | 2 | RasGAP_C | RasGAP C-terminus |
| PF03839 | 1 | Sec62 | Translocation protein Sec62 |
| PF03847 | 1 | TFIID_20kDa | Transcription initiation factor TFIID subunit A |
| PF03849 | 1 | Tfb2 | Transcription factor Tfb2 |
| PF03850 | 1 | Tfb4 | Transcription factor Tfb4 |
| PF03851 | 1 | UvdE | UV-endonuclease UvdE |
| PF03853 | 2 | YjeF_N | YjeF-related protein N-terminus |
| PF03856 | 3 | SUN | Beta-glucosidase (SUN family) |
| PF03870 | 1 | RNA_pol_Rpb8 | RNA polymerase Rpb8 |
| PF03871 | 1 | RNA_pol_Rpb5_N | RNA polymerase Rpb5, N-terminal domain |
| PF03874 | 3 | RNA_pol_Rpb4 | RNA polymerase Rpb4 |
| PF03876 | 2 | SHS2_Rpb7-N | SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397 |
| PF03878 | 1 | YIF1 | YIF1 |
| PF03879 | 1 | Cgr1 | Cgr1 family |
| PF03881 | 3 | Fructosamin_kin | Fructosamine kinase |
| PF03894 | 1 | XFP | D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase |
| PF03896 | 1 | TRAP_alpha | Translocon-associated protein (TRAP), alpha subunit |
| PF03900 | 2 | Porphobil_deamC | Porphobilinogen deaminase, C-terminal domain |
| PF03901 | 4 | Glyco_transf_22 | Alg9-like mannosyltransferase family |
| PF03902 | 1 | Gal4_dimer | Gal4-like dimerisation domain |
| PF03907 | 1 | Spo7 | Spo7-like protein |
| PF03908 | 1 | Sec20 | Sec20 |
| PF03909 | 3 | BSD | BSD domain |
| PF03914 | 3 | CBF | CBF/Mak21 family |
| PF03915 | 1 | AIP3 | Actin interacting protein 3 |
| PF03917 | 1 | GSH_synth_ATP | Eukaryotic glutathione synthase, ATP binding domain |
| PF03919 | 1 | mRNA_cap_C | mRNA capping enzyme, C-terminal domain |
| PF03928 | 2 | HbpS-like | Haem degrading protein HbpS-like |
| PF03931 | 7 | Skp1_POZ | Skp1 family, tetramerisation domain |
| PF03932 | 1 | CutC | CutC family |
| PF03937 | 1 | Sdh5 | Flavinator of succinate dehydrogenase |
| PF03939 | 1 | Ribosomal_L23eN | Ribosomal protein L23, N-terminal domain |
| PF03941 | 1 | INCENP_ARK-bind | Inner centromere protein, ARK binding region |
| PF03943 | 1 | TAP_C | TAP C-terminal domain |
| PF03946 | 2 | Ribosomal_L11_N | Ribosomal protein L11, N-terminal domain |
| PF03947 | 2 | Ribosomal_L2_C | Ribosomal Proteins L2, C-terminal domain |
| PF03949 | 3 | Malic_M | Malic enzyme, NAD binding domain |
| PF03950 | 2 | tRNA-synt_1c_C | tRNA synthetases class I (E and Q), anti-codon binding domain |
| PF03951 | 1 | Gln-synt_N | Glutamine synthetase, beta-Grasp domain |
| PF03952 | 1 | Enolase_N | Enolase, N-terminal domain |
| PF03953 | 4 | Tubulin_C | Tubulin C-terminal domain |
| PF03959 | 3 | FSH1 | Serine hydrolase (FSH1) |
| PF03966 | 1 | Trm112p | Trm112p-like protein |
| PF03969 | 3 | AFG1_ATPase | AFG1-like ATPase |
| PF03972 | 2 | MmgE_PrpD | MmgE/PrpD N-terminal domain |
| PF03980 | 1 | Nnf1 | Nnf1 |
| PF03982 | 1 | DAGAT | Diacylglycerol acyltransferase |
| PF03983 | 1 | SHD1 | SLA1 homology domain 1, SHD1 |
| PF03985 | 1 | Paf1 | Paf1 |
| PF03987 | 2 | Autophagy_act_C | Autophagocytosis associated protein, active-site domain |
| PF03997 | 1 | VPS28 | VPS28 protein |
| PF03998 | 1 | Utp11 | Utp11 protein |
| PF03999 | 1 | MAP65_ASE1 | Microtubule associated protein (MAP65/ASE1 family) |
| PF04000 | 2 | Sas10_Utp3 | Sas10/Utp3/C1D family |
| PF04003 | 3 | Utp12 | Dip2/Utp12 Family |
| PF04004 | 1 | Leo1 | Leo1-like protein |
| PF04005 | 1 | Hus1 | Hus1-like protein |
| PF04006 | 1 | Mpp10 | Mpp10 protein |
| PF04030 | 1 | ALO | D-arabinono-1,4-lactone oxidase |
| PF04031 | 1 | Las1 | Las1-like |
| PF04032 | 2 | Rpr2 | RNAse P Rpr2/Rpp21/SNM1 subunit domain |
| PF04034 | 1 | Ribo_biogen_C | Ribosome biogenesis protein, C-terminal |
| PF04037 | 1 | DUF382 | Domain of unknown function (DUF382) |
| PF04041 | 1 | Glyco_hydro_130 | beta-1,4-mannooligosaccharide phosphorylase |
| PF04042 | 3 | DNA_pol_E_B | DNA polymerase alpha/epsilon subunit B |
| PF04045 | 1 | P34-Arc | Arp2/3 complex, 34 kD subunit p34-Arc |
| PF04046 | 1 | PSP | PSP |
| PF04048 | 1 | Sec8_exocyst | Sec8 exocyst complex component specific domain |
| PF04049 | 1 | ANAPC8 | Anaphase promoting complex subunit 8 / Cdc23 |
| PF04050 | 1 | Upf2 | Up-frameshift suppressor 2 |
| PF04051 | 3 | TRAPP | Transport protein particle (TRAPP) component |
| PF04053 | 2 | Coatomer_WDAD | Coatomer WD associated region |
| PF04054 | 1 | Not1 | CCR4-Not complex component, Not1 |
| PF04055 | 7 | Radical_SAM | Radical SAM superfamily |
| PF04056 | 2 | Ssl1 | Ssl1-like |
| PF04057 | 1 | Rep-A_N | Replication factor-A protein 1, N-terminal domain |
| PF04059 | 1 | RRM_2 | RNA recognition motif 2 |
| PF04062 | 1 | P21-Arc | ARP2/3 complex ARPC3 (21 kDa) subunit |
| PF04063 | 1 | DUF383 | Domain of unknown function (DUF383) |
| PF04064 | 1 | DUF384 | Domain of unknown function (DUF384) |
| PF04065 | 1 | Not3 | Not1 N-terminal domain, CCR4-Not complex component |
| PF04068 | 2 | RLI | Possible Fer4-like domain in RNase L inhibitor, RLI |
| PF04072 | 2 | LCM | Leucine carboxyl methyltransferase |
| PF04078 | 1 | Rcd1 | Cell differentiation family, Rcd1-like |
| PF04080 | 1 | Per1 | Per1-like family |
| PF04081 | 1 | DNA_pol_delta_4 | DNA polymerase delta, subunit 4 |
| PF04082 | 175 | Fungal_trans | Fungal specific transcription factor domain |
| PF04083 | 2 | Abhydro_lipase | Partial alpha/beta-hydrolase lipase region |
| PF04084 | 1 | ORC2 | Origin recognition complex subunit 2 |
| PF04086 | 1 | SRP-alpha_N | Signal recognition particle, alpha subunit, N-terminal |
| PF04088 | 1 | Peroxin-13_N | Peroxin 13, N-terminal region |
| PF04091 | 2 | Sec15 | Exocyst complex subunit Sec15-like |
| PF04095 | 1 | NAPRTase | Nicotinate phosphoribosyltransferase (NAPRTase) family |
| PF04096 | 1 | Nucleoporin2 | Nucleoporin autopeptidase |
| PF04097 | 1 | Nic96 | Nup93/Nic96 |
| PF04098 | 1 | Rad52_Rad22 | Rad52/22 family double-strand break repair protein |
| PF04099 | 2 | Sybindin | Sybindin-like family |
| PF04100 | 1 | Vps53_N | Vps53-like, N-terminal |
| PF04101 | 1 | Glyco_tran_28_C | Glycosyltransferase family 28 C-terminal domain |
| PF04104 | 1 | DNA_primase_lrg | Eukaryotic and archaeal DNA primase, large subunit |
| PF04106 | 1 | APG5 | Autophagy protein Apg5 |
| PF04108 | 2 | ATG17_like | Autophagy protein ATG17-like domain |
| PF04109 | 1 | ATG9 | Autophagy protein ATG9 |
| PF04110 | 1 | APG12 | Ubiquitin-like autophagy protein Apg12 |
| PF04111 | 1 | APG6 | Apg6 BARA domain |
| PF04112 | 1 | Mak10 | Mak10 subunit, NatC N(alpha)-terminal acetyltransferase |
| PF04113 | 1 | Gpi16 | Gpi16 subunit, GPI transamidase component |
| PF04114 | 1 | Gaa1 | Gaa1-like, GPI transamidase component |
| PF04115 | 1 | Ureidogly_lyase | Ureidoglycolate lyase |
| PF04116 | 12 | FA_hydroxylase | Fatty acid hydroxylase |
| PF04117 | 6 | Mpv17_PMP22 | Mpv17 / PMP22 family |
| PF04118 | 1 | Dopey_N | Dopey, N-terminal |
| PF04120 | 5 | Iron_permease | Low affinity iron permease |
| PF04121 | 1 | Nup84_Nup100 | Nuclear pore protein 84 / 107 |
| PF04124 | 1 | Dor1 | Dor1-like family |
| PF04127 | 1 | DFP | DNA / pantothenate metabolism flavoprotein |
| PF04129 | 1 | Vps52 | Vps52 / Sac2 family |
| PF04130 | 5 | GCP_C_terminal | Gamma tubulin complex component C-terminal |
| PF04133 | 2 | Vps55 | Vacuolar protein sorting 55 |
| PF04135 | 1 | Nop10p | Nucleolar RNA-binding protein, Nop10p family |
| PF04136 | 1 | Sec34 | Sec34-like family |
| PF04137 | 1 | ERO1 | Endoplasmic Reticulum Oxidoreductin 1 (ERO1) |
| PF04139 | 2 | Rad9 | Rad9 |
| PF04140 | 1 | ICMT | Isoprenylcysteine carboxyl methyltransferase (ICMT) family |
| PF04142 | 2 | Nuc_sug_transp | Nucleotide-sugar transporter |
| PF04143 | 1 | Sulf_transp | Sulphur transport |
| PF04145 | 8 | Ctr | Ctr copper transporter family |
| PF04146 | 2 | YTH | YT521-B-like domain |
| PF04147 | 1 | Nop14 | Nop14-like family |
| PF04148 | 1 | Erv26 | Transmembrane adaptor Erv26 |
| PF04152 | 1 | Mre11_DNA_bind | Mre11 DNA-binding presumed domain |
| PF04153 | 2 | NOT2_3_5 | NOT2 / NOT3 / NOT5 family |
| PF04157 | 2 | EAP30 | EAP30/Vps36 family |
| PF04158 | 1 | Sof1 | Sof1-like domain |
| PF04161 | 1 | Arv1 | Arv1-like family |
| PF04163 | 1 | Tht1 | Tht1-like nuclear fusion protein |
| PF04172 | 2 | LrgB | LrgB-like family |
| PF04176 | 1 | TIP41 | TIP41-like family |
| PF04177 | 1 | TAP42 | TAP42-like family |
| PF04178 | 2 | Got1 | Got1/Sft2-like family |
| PF04179 | 1 | Init_tRNA_PT | Rit1 DUSP-like domain |
| PF04180 | 1 | LTV | Low temperature viability protein |
| PF04181 | 1 | RPAP2_Rtr1 | Rtr1/RPAP2 family |
| PF04182 | 1 | B-block_TFIIIC | B-block binding subunit of TFIIIC |
| PF04185 | 5 | Phosphoesterase | Phosphoesterase family |
| PF04188 | 1 | Mannosyl_trans2 | Mannosyltransferase (PIG-V) |
| PF04189 | 1 | Gcd10p | Gcd10p family |
| PF04190 | 1 | GET4 | Golgi to ER traffic protein 4 |
| PF04191 | 4 | PEMT | Phospholipid methyltransferase |
| PF04192 | 1 | Utp21 | Utp21 specific WD40 associated putative domain |
| PF04193 | 13 | PQ-loop | PQ loop repeat |
| PF04194 | 1 | PDCD2_C | Programmed cell death protein 2, C-terminal putative domain |
| PF04199 | 4 | Cyclase | Putative cyclase |
| PF04209 | 2 | HgmA_C | Homogentisate 1,2-dioxygenase C-terminal |
| PF04212 | 2 | MIT | MIT (microtubule interacting and transport) domain |
| PF04218 | 1 | CENP-B_N | CENP-B N-terminal DNA-binding domain |
| PF04227 | 1 | Indigoidine_A | Indigoidine synthase A like protein |
| PF04229 | 2 | GrpB | GrpB protein |
| PF04248 | 3 | NTP_transf_9 | Domain of unknown function (DUF427) |
| PF04252 | 1 | RNA_Me_trans | Predicted SAM-dependent RNA methyltransferase |
| PF04253 | 2 | TFR_dimer | Transferrin receptor-like dimerisation domain |
| PF04258 | 2 | Peptidase_A22B | Signal peptide peptidase |
| PF04261 | 1 | Dyp_perox | Dyp-type peroxidase family |
| PF04263 | 1 | TPK_catalytic | Thiamin pyrophosphokinase, catalytic domain |
| PF04265 | 1 | TPK_B1_binding | Thiamin pyrophosphokinase, vitamin B1 binding domain |
| PF04275 | 1 | P-mevalo_kinase | Phosphomevalonate kinase |
| PF04280 | 2 | Tim44 | Tim44-like domain |
| PF04281 | 1 | Tom22 | Mitochondrial import receptor subunit Tom22 |
| PF04299 | 3 | FMN_bind_2 | Putative FMN-binding domain |
| PF04303 | 1 | PrpF | PrpF protein |
| PF04321 | 8 | RmlD_sub_bind | RmlD substrate binding domain |
| PF04324 | 1 | Fer2_BFD | BFD-like [2Fe-2S] binding domain |
| PF04366 | 4 | Ysc84 | Las17-binding protein actin regulator |
| PF04371 | 2 | PAD_porph | Porphyromonas-type peptidyl-arginine deiminase |
| PF04377 | 1 | ATE_C | Arginine-tRNA-protein transferase, C terminus |
| PF04383 | 1 | KilA-N | KilA-N domain |
| PF04387 | 1 | PTPLA | Protein tyrosine phosphatase-like protein, PTPLA |
| PF04388 | 1 | Hamartin | Hamartin protein |
| PF04389 | 13 | Peptidase_M28 | Peptidase family M28 |
| PF04402 | 2 | SIMPL | Protein of unknown function (DUF541) |
| PF04406 | 1 | TP6A_N | Type IIB DNA topoisomerase |
| PF04408 | 9 | HA2 | Helicase associated domain (HA2) |
| PF04410 | 2 | Gar1 | Gar1/Naf1 RNA binding region |
| PF04412 | 1 | AcnX | Aconitase X |
| PF04418 | 1 | DUF543 | Domain of unknown function (DUF543) |
| PF04419 | 1 | 4F5 | 4F5 protein related disordered region |
| PF04420 | 1 | CHD5 | CHD5-like protein |
| PF04424 | 1 | MINDY_DUB | MINDY deubiquitinase |
| PF04427 | 5 | Brix | Brix domain |
| PF04428 | 1 | Choline_kin_N | Choline kinase N terminus |
| PF04430 | 2 | DUF498 | Protein of unknown function (DUF498/DUF598) |
| PF04433 | 8 | SWIRM | SWIRM domain |
| PF04437 | 1 | RINT1_TIP1 | RINT-1 / TIP-1 family |
| PF04438 | 3 | zf-HIT | HIT zinc finger |
| PF04442 | 1 | CtaG_Cox11 | Cytochrome c oxidase assembly protein CtaG/Cox11 |
| PF04444 | 2 | Dioxygenase_N | Catechol dioxygenase N terminus |
| PF04446 | 1 | Thg1 | tRNAHis guanylyltransferase |
| PF04450 | 1 | BSP | Peptidase of plants and bacteria |
| PF04457 | 1 | MJ1316 | MJ1316 RNA cyclic group end recognition domain |
| PF04468 | 1 | PSP1 | PSP1 C-terminal conserved region |
| PF04471 | 1 | Mrr_cat | Restriction endonuclease |
| PF04478 | 1 | Mid2 | Mid2 like cell wall stress sensor |
| PF04479 | 18 | RTA1 | RTA1 like protein |
| PF04488 | 17 | Gly_transf_sug | Glycosyltransferase sugar-binding region containing DXD motif |
| PF04494 | 1 | TFIID_NTD2 | WD40 associated region in TFIID subunit, NTD2 domain |
| PF04495 | 1 | GRASP55_65 | GRASP55/65 PDZ-like domain |
| PF04499 | 1 | SAPS | SIT4 phosphatase-associated protein |
| PF04502 | 2 | Saf4_Yju2 | Saf4/Yju2 protein |
| PF04506 | 1 | Rft-1 | Rft protein |
| PF04511 | 2 | DER1 | Der1-like family |
| PF04515 | 2 | Choline_transpo | Plasma-membrane choline transporter |
| PF04516 | 4 | CP2 | CP2 transcription factor |
| PF04525 | 1 | LOR | LURP-one-related |
| PF04547 | 2 | Anoctamin | Calcium-activated chloride channel |
| PF04560 | 2 | RNA_pol_Rpb2_7 | RNA polymerase Rpb2, domain 7 |
| PF04561 | 2 | RNA_pol_Rpb2_2 | RNA polymerase Rpb2, domain 2 |
| PF04563 | 2 | RNA_pol_Rpb2_1 | RNA polymerase beta subunit |
| PF04564 | 2 | U-box | U-box domain |
| PF04565 | 2 | RNA_pol_Rpb2_3 | RNA polymerase Rpb2, domain 3 |
| PF04566 | 1 | RNA_pol_Rpb2_4 | RNA polymerase Rpb2, domain 4 |
| PF04567 | 1 | RNA_pol_Rpb2_5 | RNA polymerase Rpb2, domain 5 |
| PF04568 | 1 | IATP | Mitochondrial ATPase inhibitor, IATP |
| PF04571 | 1 | Lipin_N | lipin, N-terminal conserved region |
| PF04573 | 1 | SPC22 | Signal peptidase subunit |
| PF04577 | 3 | Glyco_transf_61 | Glycosyltransferase 61 |
| PF04588 | 2 | HIG_1_N | Hypoxia induced protein conserved region |
| PF04597 | 1 | Ribophorin_I | Ribophorin I |
| PF04603 | 1 | Mog1 | Ran-interacting Mog1 protein |
| PF04614 | 1 | Pex19 | Pex19 protein family |
| PF04615 | 1 | Utp14 | Utp14 protein |
| PF04616 | 3 | Glyco_hydro_43 | Glycosyl hydrolases family 43 |
| PF04622 | 1 | ERG2_Sigma1R | ERG2 and Sigma1 receptor like protein |
| PF04627 | 1 | ATP-synt_Eps | Mitochondrial ATP synthase epsilon chain |
| PF04628 | 3 | Sedlin_N | Sedlin, N-terminal conserved region |
| PF04641 | 1 | Rtf2 | Rtf2 RING-finger |
| PF04652 | 1 | Vta1 | Vta1 like |
| PF04658 | 1 | TAFII55_N | TAFII55 protein conserved region |
| PF04666 | 1 | Glyco_transf_54 | N-Acetylglucosaminyltransferase-IV (GnT-IV) conserved region |
| PF04667 | 2 | Endosulfine | cAMP-regulated phosphoprotein/endosulfine conserved region |
| PF04669 | 1 | Polysacc_synt_4 | Polysaccharide biosynthesis |
| PF04670 | 9 | Gtr1_RagA | Gtr1/RagA G protein conserved region |
| PF04675 | 4 | DNA_ligase_A_N | DNA ligase N terminus |
| PF04676 | 2 | CwfJ_C_2 | Protein similar to CwfJ C-terminus 2 |
| PF04677 | 2 | CwfJ_C_1 | Protein similar to CwfJ C-terminus 1 |
| PF04678 | 1 | MCU | Mitochondrial calcium uniporter |
| PF04679 | 3 | DNA_ligase_A_C | ATP dependent DNA ligase C terminal region |
| PF04681 | 1 | Bys1 | Blastomyces yeast-phase-specific protein |
| PF04683 | 1 | Proteasom_Rpn13 | Proteasome complex subunit Rpn13 ubiquitin receptor |
| PF04687 | 1 | Microvir_H | Microvirus H protein (pilot protein) |
| PF04695 | 2 | Pex14_N | Pex14 N-terminal domain |
| PF04696 | 1 | Pinin_SDK_memA | pinin/SDK/memA/ protein conserved region |
| PF04699 | 1 | P16-Arc | ARP2/3 complex 16 kDa subunit (p16-Arc) |
| PF04707 | 2 | PRELI | PRELI-like family |
| PF04715 | 3 | Anth_synt_I_N | Anthranilate synthase component I, N terminal region |
| PF04716 | 1 | ETC_C1_NDUFA5 | ETC complex I subunit conserved region |
| PF04718 | 1 | ATP-synt_G | Mitochondrial ATP synthase g subunit |
| PF04719 | 1 | TAFII28 | hTAFII28-like protein conserved region |
| PF04722 | 1 | Ssu72 | Ssu72-like protein |
| PF04724 | 1 | Glyco_transf_17 | Glycosyltransferase family 17 |
| PF04727 | 1 | ELMO_CED12 | ELMO/CED-12 family |
| PF04729 | 1 | ASF1_hist_chap | ASF1 like histone chaperone |
| PF04733 | 1 | Coatomer_E | Coatomer epsilon subunit |
| PF04734 | 3 | Ceramidase_alk | Neutral/alkaline non-lysosomal ceramidase, N-terminal |
| PF04739 | 1 | AMPKBI | 5'-AMP-activated protein kinase beta subunit, interaction domain |
| PF04749 | 1 | PLAC8 | PLAC8 family |
| PF04750 | 1 | Far-17a_AIG1 | FAR-17a/AIG1-like protein |
| PF04752 | 2 | ChaC | ChaC-like protein |
| PF04756 | 1 | OST3_OST6 | OST3 / OST6 family, transporter family |
| PF04757 | 3 | Pex2_Pex12 | Pex2 / Pex12 amino terminal region |
| PF04758 | 1 | Ribosomal_S30 | Ribosomal protein S30 |
| PF04762 | 1 | IKI3 | IKI3 family |
| PF04768 | 2 | NAT | NAT, N-acetyltransferase, of N-acetylglutamate synthase |
| PF04777 | 1 | Evr1_Alr | Erv1 / Alr family |
| PF04791 | 2 | LMBR1 | LMBR1-like membrane protein |
| PF04795 | 1 | PAPA-1 | PAPA-1-like conserved region |
| PF04800 | 1 | NDUS4 | NADH dehydrogenase ubiquinone Fe-S protein 4 |
| PF04801 | 1 | RPC5 | RPC5 protein |
| PF04802 | 1 | PP4R3 | Phosphatase 4 regulatory subunit 3 |
| PF04810 | 3 | zf-Sec23_Sec24 | Sec23/Sec24 zinc finger |
| PF04811 | 3 | Sec23_trunk | Sec23/Sec24 trunk domain |
| PF04815 | 3 | Sec23_helical | Sec23/Sec24 helical domain |
| PF04818 | 4 | CID | CID domain |
| PF04820 | 2 | Trp_halogenase | Tryptophan halogenase |
| PF04821 | 1 | TIMELESS | Timeless protein |
| PF04824 | 1 | Rad21_Rec8 | Conserved region of Rad21 / Rec8 like protein |
| PF04825 | 2 | Rad21_Rec8_N | N terminus of Rad21 / Rec8 like protein |
| PF04826 | 1 | Arm_2 | Armadillo-like |
| PF04828 | 18 | GFA | Glutathione-dependent formaldehyde-activating enzyme |
| PF04840 | 1 | Vps16_C | Vps16, C-terminal region |
| PF04841 | 1 | Vps16_N | Vps16, N-terminal region |
| PF04847 | 1 | Calcipressin | Calcipressin |
| PF04851 | 43 | ResIII | Type III restriction enzyme, res subunit |
| PF04855 | 2 | SNF5 | SNF5 / SMARCB1 / INI1 |
| PF04857 | 3 | CAF1 | CAF1 family ribonuclease |
| PF04869 | 1 | Uso1_p115_head | Uso1 / p115 like vesicle tethering protein, head region |
| PF04871 | 1 | Uso1_p115_C | Uso1 / p115 like vesicle tethering protein, C terminal region |
| PF04874 | 1 | Mak16 | Mak16 protein C-terminal region |
| PF04880 | 1 | NUDE_C | NUDE protein, C-terminal conserved region |
| PF04882 | 1 | Peroxin-3 | Peroxin-3 |
| PF04884 | 1 | UVB_sens_prot | Vitamin B6 photo-protection and homoeostasis |
| PF04889 | 1 | Cwf_Cwc_15 | Cwf15/Cwc15 cell cycle control protein |
| PF04893 | 2 | Yip1 | Yip1 domain |
| PF04898 | 1 | Glu_syn_central | Glutamate synthase central domain |
| PF04900 | 2 | Fcf1 | Fcf1 |
| PF04909 | 10 | Amidohydro_2 | Amidohydrolase |
| PF04910 | 1 | Tcf25 | Transcriptional repressor TCF25 |
| PF04911 | 1 | ATP-synt_J | ATP synthase j chain |
| PF04912 | 1 | Dynamitin | Dynamitin |
| PF04921 | 1 | XAP5 | XAP5, circadian clock regulator |
| PF04922 | 1 | DIE2_ALG10 | DIE2/ALG10 family |
| PF04926 | 1 | PAP_RNA-bind | Poly(A) polymerase predicted RNA binding domain |
| PF04928 | 2 | PAP_central | Poly(A) polymerase central domain |
| PF04931 | 1 | DNA_pol_phi | DNA polymerase phi |
| PF04934 | 1 | Med6 | MED6 mediator sub complex component |
| PF04935 | 1 | SURF6 | Surfeit locus protein 6 |
| PF04938 | 1 | SIP1 | Survival motor neuron (SMN) interacting protein 1 (SIP1) |
| PF04939 | 1 | RRS1 | Ribosome biogenesis regulatory protein (RRS1) |
| PF04950 | 2 | RIBIOP_C | 40S ribosome biogenesis protein Tsr1 and BMS1 C-terminal |
| PF04959 | 1 | ARS2 | Arsenite-resistance protein 2 |
| PF04968 | 2 | CHORD | CHORD |
| PF04969 | 4 | CS | CS domain |
| PF04972 | 2 | BON | BON domain |
| PF04979 | 1 | IPP-2 | Protein phosphatase inhibitor 2 (IPP-2) |
| PF04981 | 1 | NMD3 | NMD3 family |
| PF04982 | 1 | HPP | HPP family |
| PF04983 | 3 | RNA_pol_Rpb1_3 | RNA polymerase Rpb1, domain 3 |
| PF04990 | 1 | RNA_pol_Rpb1_7 | RNA polymerase Rpb1, domain 7 |
| PF04991 | 3 | LicD | LicD family |
| PF04992 | 1 | RNA_pol_Rpb1_6 | RNA polymerase Rpb1, domain 6 |
| PF04997 | 3 | RNA_pol_Rpb1_1 | RNA polymerase Rpb1, domain 1 |
| PF04998 | 3 | RNA_pol_Rpb1_5 | RNA polymerase Rpb1, domain 5 |
| PF05000 | 3 | RNA_pol_Rpb1_4 | RNA polymerase Rpb1, domain 4 |
| PF05002 | 1 | SGS | SGS domain |
| PF05004 | 1 | IFRD | Interferon-related developmental regulator (IFRD) |
| PF05007 | 1 | Mannosyl_trans | Mannosyltransferase (PIG-M) |
| PF05008 | 1 | V-SNARE | Vesicle transport v-SNARE protein N-terminus |
| PF05011 | 2 | DBR1 | Lariat debranching enzyme, C-terminal domain |
| PF05019 | 1 | Coq4 | Coenzyme Q (ubiquinone) biosynthesis protein Coq4 |
| PF05020 | 1 | zf-NPL4 | NPL4 family, putative zinc binding region |
| PF05021 | 1 | NPL4 | NPL4 family |
| PF05022 | 1 | SRP40_C | SRP40, C-terminal domain |
| PF05024 | 1 | Gpi1 | N-acetylglucosaminyl transferase component (Gpi1) |
| PF05026 | 1 | DCP2 | Dcp2, box A domain |
| PF05028 | 1 | PARG_cat | Poly (ADP-ribose) glycohydrolase (PARG) |
| PF05032 | 1 | Spo12 | Spo12 family |
| PF05033 | 1 | Pre-SET | Pre-SET motif |
| PF05046 | 1 | Img2 | Mitochondrial large subunit ribosomal protein (Img2) |
| PF05047 | 3 | L51_S25_CI-B8 | Mitochondrial ribosomal protein L51 / S25 / CI-B8 domain |
| PF05048 | 2 | NosD | Periplasmic copper-binding protein (NosD) |
| PF05049 | 1 | IIGP | Interferon-inducible GTPase (IIGP) |
| PF05057 | 14 | DUF676 | Putative serine esterase (DUF676) |
| PF05063 | 1 | MT-A70 | MT-A70 |
| PF05064 | 1 | Nsp1_C | Nsp1-like C-terminal region |
| PF05071 | 2 | NDUFA12 | NADH ubiquinone oxidoreductase subunit NDUFA12 |
| PF05088 | 1 | Bac_GDH | Bacterial NAD-glutamate dehydrogenase |
| PF05089 | 1 | NAGLU | Alpha-N-acetylglucosaminidase (NAGLU) tim-barrel domain |
| PF05091 | 1 | eIF-3_zeta | Eukaryotic translation initiation factor 3 subunit 7 (eIF-3) |
| PF05093 | 1 | CIAPIN1 | Cytokine-induced anti-apoptosis inhibitor 1, Fe-S biogenesis |
| PF05116 | 1 | S6PP | Sucrose-6F-phosphate phosphohydrolase |
| PF05127 | 8 | Helicase_RecD | Helicase |
| PF05129 | 1 | Elf1 | Transcription elongation factor Elf1 like |
| PF05131 | 1 | Pep3_Vps18 | Pep3/Vps18/deep orange family |
| PF05132 | 1 | RNA_pol_Rpc4 | RNA polymerase III RPC4 |
| PF05141 | 1 | DIT1_PvcA | Pyoverdine/dityrosine biosynthesis protein |
| PF05147 | 1 | LANC_like | Lanthionine synthetase C-like protein |
| PF05148 | 1 | Methyltransf_8 | Hypothetical methyltransferase |
| PF05153 | 1 | MIOX | Myo-inositol oxygenase |
| PF05158 | 1 | RNA_pol_Rpc34 | RNA polymerase Rpc34 subunit |
| PF05160 | 1 | DSS1_SEM1 | DSS1/SEM1 family |
| PF05175 | 5 | MTS | Methyltransferase small domain |
| PF05176 | 1 | ATP-synt_10 | ATP10 protein |
| PF05178 | 1 | Kri1 | KRI1-like family |
| PF05179 | 1 | CDC73_C | RNA pol II accessory factor, Cdc73 family, C-terminal |
| PF05180 | 1 | zf-DNL | DNL zinc finger |
| PF05181 | 1 | XPA_C | XPA protein C-terminus |
| PF05182 | 1 | Fip1 | Fip1 motif |
| PF05183 | 3 | RdRP | RNA dependent RNA polymerase |
| PF05185 | 1 | PRMT5 | PRMT5 arginine-N-methyltransferase |
| PF05186 | 1 | Dpy-30 | Dpy-30 motif |
| PF05187 | 1 | ETF_QO | Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S |
| PF05188 | 5 | MutS_II | MutS domain II |
| PF05189 | 1 | RTC_insert | RNA 3'-terminal phosphate cyclase (RTC), insert domain |
| PF05190 | 4 | MutS_IV | MutS family domain IV |
| PF05191 | 2 | ADK_lid | Adenylate kinase, active site lid |
| PF05192 | 6 | MutS_III | MutS domain III |
| PF05193 | 8 | Peptidase_M16_C | Peptidase M16 inactive domain |
| PF05195 | 3 | AMP_N | Aminopeptidase P, N-terminal domain |
| PF05199 | 19 | GMC_oxred_C | GMC oxidoreductase |
| PF05205 | 1 | COMPASS-Shg1 | COMPASS (Complex proteins associated with Set1p) component shg1 |
| PF05207 | 2 | zf-CSL | CSL zinc finger |
| PF05208 | 1 | ALG3 | ALG3 protein |
| PF05221 | 2 | AdoHcyase | S-adenosyl-L-homocysteine hydrolase |
| PF05222 | 2 | AlaDh_PNT_N | Alanine dehydrogenase/PNT, N-terminal domain |
| PF05224 | 3 | NDT80_PhoG | NDT80 / PhoG like DNA-binding family |
| PF05225 | 4 | HTH_psq | helix-turn-helix, Psq domain |
| PF05236 | 1 | TAF4 | Transcription initiation factor TFIID component TAF4 family |
| PF05238 | 1 | CENP-N | Kinetochore protein CHL4 like |
| PF05241 | 4 | EBP | EXPERA (EXPanded EBP superfamily) |
| PF05254 | 1 | UPF0203 | Uncharacterised protein family (UPF0203) |
| PF05255 | 1 | UPF0220 | Uncharacterised protein family (UPF0220) |
| PF05257 | 2 | CHAP | CHAP domain |
| PF05270 | 2 | AbfB | Alpha-L-arabinofuranosidase B (ABFB) domain |
| PF05277 | 3 | DUF726 | Protein of unknown function (DUF726) |
| PF05282 | 1 | AAR2 | AAR2 protein |
| PF05285 | 1 | SDA1 | SDA1 |
| PF05291 | 1 | Bystin | Bystin |
| PF05327 | 1 | RRN3 | RNA polymerase I specific transcription initiation factor RRN3 |
| PF05328 | 1 | CybS | CybS, succinate dehydrogenase cytochrome B small subunit |
| PF05336 | 1 | rhaM | L-rhamnose mutarotase |
| PF05345 | 3 | He_PIG | Putative Ig domain |
| PF05346 | 1 | DUF747 | Eukaryotic membrane protein family |
| PF05347 | 5 | Complex1_LYR | Complex 1 protein (LYR family) |
| PF05348 | 1 | UMP1 | Proteasome maturation factor UMP1 |
| PF05362 | 2 | Lon_C | Lon protease (S16) C-terminal proteolytic domain |
| PF05365 | 1 | UCR_UQCRX_QCR9 | Ubiquinol-cytochrome C reductase, UQCRX/QCR9 like |
| PF05368 | 37 | NmrA | NmrA-like family |
| PF05378 | 5 | Hydant_A_N | Hydantoinase/oxoprolinase N-terminal region |
| PF05383 | 2 | La | La domain |
| PF05388 | 1 | Carbpep_Y_N | Carboxypeptidase Y pro-peptide |
| PF05405 | 1 | Mt_ATP-synt_B | Mitochondrial ATP synthase B chain precursor (ATP-synt_B) |
| PF05406 | 1 | WGR | WGR domain |
| PF05426 | 2 | Alginate_lyase | Alginate lyase |
| PF05460 | 1 | ORC6 | Origin recognition complex subunit 6 (ORC6) |
| PF05462 | 5 | Dicty_CAR | Slime mold cyclic AMP receptor |
| PF05470 | 2 | eIF-3c_N | Eukaryotic translation initiation factor 3 subunit 8 N-terminus |
| PF05486 | 2 | SRP9-21 | Signal recognition particle 9 kDa protein (SRP9) |
| PF05493 | 1 | ATP_synt_H | ATP synthase subunit H |
| PF05495 | 3 | zf-CHY | CHY zinc finger |
| PF05496 | 2 | RuvB_N | Holliday junction DNA helicase RuvB P-loop domain |
| PF05502 | 1 | Dynactin_p62 | Dynactin p62 family |
| PF05508 | 1 | Ran-binding | RanGTP-binding protein |
| PF05529 | 1 | Bap31 | Bap31/Bap29 transmembrane region |
| PF05532 | 1 | CsbD | CsbD-like |
| PF05536 | 1 | Neurochondrin | Neurochondrin |
| PF05544 | 3 | Pro_racemase | Proline racemase |
| PF05546 | 1 | She9_MDM33 | She9 / Mdm33 family |
| PF05557 | 1 | MAD | Mitotic checkpoint protein |
| PF05572 | 3 | Peptidase_M43 | Pregnancy-associated plasma protein-A |
| PF05577 | 3 | Peptidase_S28 | Serine carboxypeptidase S28 |
| PF05592 | 1 | Bac_rhamnosid | Bacterial alpha-L-rhamnosidase concanavalin-like domain |
| PF05602 | 1 | CLPTM1 | Cleft lip and palate transmembrane protein 1 (CLPTM1) |
| PF05603 | 1 | DUF775 | Protein of unknown function (DUF775) |
| PF05615 | 1 | THOC7 | Tho complex subunit 7 |
| PF05620 | 1 | TMEM208_SND2 | SRP-independent targeting protein 2/TMEM208 |
| PF05625 | 1 | PAXNEB | PAXNEB protein |
| PF05630 | 3 | NPP1 | Necrosis inducing protein (NPP1) |
| PF05631 | 1 | MFS_5 | Sugar-tranasporters, 12 TM |
| PF05637 | 3 | Glyco_transf_34 | galactosyl transferase GMA12/MNN10 family |
| PF05645 | 1 | RNA_pol_Rpc82 | RNA polymerase III subunit RPC82 |
| PF05648 | 3 | PEX11 | Peroxisomal biogenesis factor 11 (PEX11) |
| PF05652 | 1 | DcpS | Scavenger mRNA decapping enzyme (DcpS) N-terminal |
| PF05653 | 4 | Mg_trans_NIPA | Magnesium transporter NIPA |
| PF05669 | 1 | Med31 | SOH1 |
| PF05670 | 2 | NFACT-R_1 | NFACT protein RNA binding domain |
| PF05673 | 2 | DUF815 | Protein of unknown function (DUF815) |
| PF05680 | 1 | ATP-synt_E | ATP synthase E chain |
| PF05686 | 6 | Glyco_transf_90 | Glycosyl transferase family 90 |
| PF05690 | 1 | ThiG | Thiazole biosynthesis protein ThiG |
| PF05691 | 2 | Raffinose_syn | Raffinose synthase or seed imbibition protein Sip1 |
| PF05693 | 1 | Glycogen_syn | Glycogen synthase |
| PF05694 | 1 | SBP56 | 56kDa selenium binding protein (SBP56) |
| PF05699 | 19 | Dimer_Tnp_hAT | hAT family C-terminal dimerisation region |
| PF05700 | 1 | BCAS2 | Breast carcinoma amplified sequence 2 (BCAS2) |
| PF05704 | 3 | Caps_synth | Capsular polysaccharide synthesis protein |
| PF05705 | 2 | DUF829 | Eukaryotic protein of unknown function (DUF829) |
| PF05712 | 1 | MRG | MRG |
| PF05719 | 1 | GPP34 | Golgi phosphoprotein 3 (GPP34) |
| PF05721 | 14 | PhyH | Phytanoyl-CoA dioxygenase (PhyH) |
| PF05724 | 2 | TPMT | Thiopurine S-methyltransferase (TPMT) |
| PF05726 | 1 | Pirin_C | Pirin C-terminal cupin domain |
| PF05729 | 33 | NACHT | NACHT domain |
| PF05730 | 32 | CFEM | CFEM domain |
| PF05739 | 6 | SNARE | SNARE domain |
| PF05742 | 1 | TANGO2 | Transport and Golgi organisation 2 |
| PF05743 | 1 | UEV | UEV domain |
| PF05746 | 2 | DALR_1 | DALR anticodon binding domain |
| PF05764 | 1 | YL1 | YL1 nuclear protein |
| PF05768 | 1 | Glrx-like | Glutaredoxin-like domain (DUF836) |
| PF05773 | 4 | RWD | RWD domain |
| PF05783 | 1 | DLIC | Dynein light intermediate chain (DLIC) |
| PF05786 | 1 | Cnd2 | Condensin complex subunit 2 |
| PF05794 | 2 | Tcp11 | T-complex protein 11 |
| PF05804 | 1 | KAP | Kinesin-associated protein (KAP) |
| PF05808 | 1 | Podoplanin | Podoplanin |
| PF05817 | 1 | Ribophorin_II | Oligosaccharyltransferase subunit Ribophorin II |
| PF05821 | 1 | NDUF_B8 | NADH-ubiquinone oxidoreductase ASHI subunit (CI-ASHI or NDUFB8) |
| PF05832 | 1 | DUF846 | Eukaryotic protein of unknown function (DUF846) |
| PF05833 | 1 | NFACT_N | NFACT N-terminal and middle domains |
| PF05834 | 1 | Lycopene_cycl | Lycopene cyclase protein |
| PF05837 | 1 | CENP-H | Centromere protein H (CENP-H) |
| PF05839 | 1 | Apc13p | Apc13p protein |
| PF05840 | 1 | Phage_GPA | Bacteriophage replication gene A protein (GPA) |
| PF05841 | 1 | Apc15p | Apc15p protein |
| PF05843 | 1 | Suf | Suppressor of forked protein (Suf) |
| PF05856 | 1 | ARPC4 | ARP2/3 complex 20 kDa subunit (ARPC4) |
| PF05859 | 1 | Mis12 | Mis12 protein |
| PF05871 | 1 | ESCRT-II | ESCRT-II complex subunit |
| PF05873 | 1 | Mt_ATP-synt_D | ATP synthase D chain, mitochondrial (ATP5H) |
| PF05875 | 1 | Ceramidase | Ceramidase |
| PF05879 | 1 | RHD3_GTPase | Root hair defective 3 GTP-binding protein (RHD3) GTPase domain |
| PF05890 | 1 | Ebp2 | Eukaryotic rRNA processing protein EBP2 |
| PF05891 | 2 | Methyltransf_PK | AdoMet dependent proline di-methyltransferase |
| PF05893 | 1 | LuxC | Acyl-CoA reductase (LuxC) |
| PF05899 | 1 | Cupin_3 | EutQ-like cupin domain |
| PF05903 | 2 | Peptidase_C97 | PPPDE putative peptidase domain |
| PF05907 | 1 | CXXC_Zn-b_euk | CXXC motif containing zinc binding protein, eukaryotic |
| PF05916 | 4 | Sld5 | GINS complex protein |
| PF05920 | 6 | Homeobox_KN | Homeobox KN domain |
| PF05922 | 14 | Inhibitor_I9 | Peptidase inhibitor I9 |
| PF05935 | 7 | Arylsulfotrans | Arylsulfotransferase (ASST) |
| PF05958 | 1 | tRNA_U5-meth_tr | tRNA (Uracil-5-)-methyltransferase |
| PF05960 | 1 | DUF885 | Bacterial protein of unknown function (DUF885) |
| PF05970 | 17 | PIF1 | PIF1-like helicase |
| PF05971 | 2 | Methyltransf_10 | RNA methyltransferase |
| PF05978 | 11 | UNC-93 | Ion channel regulatory protein UNC-93 |
| PF05983 | 1 | Med7 | MED7 protein |
| PF05988 | 1 | DUF899 | Bacterial protein of unknown function (DUF899) |
| PF05995 | 1 | CDO_I | Cysteine dioxygenase type I |
| PF05997 | 1 | Nop52 | Nucleolar protein,Nop52 |
| PF06011 | 7 | TRP | Transient receptor potential (TRP) ion channel |
| PF06012 | 1 | DUF908 | Domain of Unknown Function (DUF908) |
| PF06017 | 1 | Myosin_TH1 | Unconventional myosin tail, actin- and lipid-binding |
| PF06025 | 1 | DUF913 | Domain of Unknown Function (DUF913) |
| PF06026 | 1 | Rib_5-P_isom_A | Ribose 5-phosphate isomerase A (phosphoriboisomerase A) |
| PF06027 | 2 | SLC35F | Solute carrier family 35 |
| PF06028 | 1 | DUF915 | Alpha/beta hydrolase of unknown function (DUF915) |
| PF06032 | 2 | DUF917 | Protein of unknown function (DUF917) |
| PF06041 | 1 | DUF924 | Bacterial protein of unknown function (DUF924) |
| PF06042 | 1 | NTP_transf_6 | Nucleotidyltransferase |
| PF06046 | 1 | Sec6 | Exocyst complex component Sec6 |
| PF06052 | 1 | 3-HAO | 3-hydroxyanthranilic acid dioxygenase |
| PF06058 | 1 | DCP1 | Dcp1-like decapping family |
| PF06068 | 2 | TIP49 | TIP49 P-loop domain |
| PF06071 | 1 | YchF-GTPase_C | Protein of unknown function (DUF933) |
| PF06087 | 2 | Tyr-DNA_phospho | Tyrosyl-DNA phosphodiesterase |
| PF06089 | 1 | Asparaginase_II | L-asparaginase II |
| PF06093 | 1 | Spt4 | Spt4/RpoE2 zinc finger |
| PF06094 | 3 | GGACT | Gamma-glutamyl cyclotransferase, AIG2-like |
| PF06101 | 1 | Vps62 | Vacuolar protein sorting-associated protein 62 |
| PF06102 | 1 | RRP36 | rRNA biogenesis protein RRP36 |
| PF06108 | 1 | DUF952 | Protein of unknown function (DUF952) |
| PF06127 | 1 | Mpo1-like | 2-hydroxy-palmitic acid dioxygenase Mpo1-like |
| PF06140 | 3 | Ifi-6-16 | Interferon-induced 6-16 family |
| PF06148 | 1 | COG2 | COG (conserved oligomeric Golgi) complex component, COG2 |
| PF06155 | 1 | GBBH-like_N | Gamma-butyrobetaine hydroxylase-like, N-terminal |
| PF06159 | 1 | DUF974 | Protein of unknown function (DUF974) |
| PF06172 | 1 | Cupin_5 | Cupin superfamily (DUF985) |
| PF06179 | 1 | Med22 | Surfeit locus protein 5 subunit 22 of Mediator complex |
| PF06201 | 2 | PITH | PITH domain |
| PF06202 | 1 | GDE_C | Amylo-alpha-1,6-glucosidase |
| PF06212 | 1 | GRIM-19 | GRIM-19 protein |
| PF06218 | 2 | NPR2 | Nitrogen permease regulator 2 |
| PF06220 | 2 | zf-U1 | U1 zinc finger |
| PF06221 | 1 | zf-C2HC5 | Putative zinc finger motif, C2HC5-type |
| PF06229 | 1 | FRG1 | FRG1-like domain |
| PF06244 | 1 | Ccdc124 | Coiled-coil domain-containing protein 124 /Oxs1 |
| PF06246 | 1 | Isy1 | Isy1-like splicing family |
| PF06249 | 1 | EutQ | Ethanolamine utilisation protein EutQ |
| PF06280 | 13 | fn3_5 | Fn3-like domain |
| PF06283 | 1 | ThuA | Trehalose utilisation |
| PF06292 | 1 | MUN | MUN domain |
| PF06293 | 6 | Kdo | Lipopolysaccharide kinase (Kdo/WaaP) family |
| PF06314 | 3 | ADC | Acetoacetate decarboxylase (ADC) |
| PF06320 | 1 | GCN5L1 | GCN5-like protein 1 (GCN5L1) |
| PF06325 | 4 | PrmA | Ribosomal protein L11 methyltransferase (PrmA) |
| PF06330 | 1 | TRI5 | Trichodiene synthase (TRI5) |
| PF06331 | 1 | Tfb5 | Transcription factor TFIIH complex subunit Tfb5 |
| PF06333 | 1 | Med13_C | Mediator complex subunit 13 C-terminal domain |
| PF06337 | 1 | DUSP | DUSP domain |
| PF06342 | 1 | DUF1057 | Alpha/beta hydrolase of unknown function (DUF1057) |
| PF06367 | 1 | Drf_FH3 | Diaphanous FH3 Domain |
| PF06371 | 2 | Drf_GBD | Diaphanous GTPase-binding Domain |
| PF06391 | 1 | MAT1 | CDK-activating kinase assembly factor MAT1 |
| PF06395 | 1 | CDC24 | CDC24 Calponin |
| PF06398 | 2 | Pex24p | Integral peroxisomal membrane peroxin |
| PF06413 | 1 | Neugrin | Neugrin |
| PF06414 | 3 | Zeta_toxin | Zeta toxin |
| PF06415 | 1 | iPGM_N | BPG-independent PGAM N-terminus (iPGM_N) |
| PF06417 | 1 | DUF1077 | Protein of unknown function (DUF1077) |
| PF06418 | 1 | CTP_synth_N | CTP synthase N-terminus |
| PF06419 | 1 | COG6 | Conserved oligomeric complex COG6 |
| PF06420 | 1 | Mgm101p | Mitochondrial genome maintenance MGM101 |
| PF06421 | 1 | LepA_C | GTP-binding protein LepA C-terminus |
| PF06422 | 12 | PDR_CDR | CDR ABC transporter |
| PF06423 | 1 | GWT1 | GWT1 |
| PF06424 | 1 | PRP1_N | PRP1 splicing factor, N-terminal |
| PF06427 | 1 | UDP-g_GGTase | UDP-glucose:Glycoprotein Glucosyltransferase |
| PF06428 | 2 | Sec2p | GDP/GTP exchange factor Sec2p |
| PF06432 | 1 | GPI2 | Phosphatidylinositol N-acetylglucosaminyltransferase |
| PF06437 | 1 | ISN1 | IMP-specific 5'-nucleotidase |
| PF06441 | 3 | EHN | Epoxide hydrolase N terminus |
| PF06463 | 1 | Mob_synth_C | Molybdenum Cofactor Synthesis C |
| PF06464 | 1 | DMAP_binding | DMAP1-binding Domain |
| PF06470 | 4 | SMC_hinge | SMC proteins Flexible Hinge Domain |
| PF06472 | 2 | ABC_membrane_2 | ABC transporter transmembrane region 2 |
| PF06475 | 1 | Glycolipid_bind | Putative glycolipid-binding |
| PF06479 | 1 | Ribonuc_2-5A | Ribonuclease 2-5A |
| PF06480 | 1 | FtsH_ext | FtsH Extracellular |
| PF06487 | 1 | SAP18 | Sin3 associated polypeptide p18 (SAP18) |
| PF06500 | 3 | FrsA-like | Esterase FrsA-like |
| PF06516 | 1 | NUP | Purine nucleoside permease (NUP) |
| PF06544 | 1 | DUF1115 | Protein of unknown function (DUF1115) |
| PF06602 | 1 | Myotub-related | Myotubularin-like phosphatase domain |
| PF06609 | 38 | TRI12 | Fungal trichothecene efflux pump (TRI12) |
| PF06624 | 1 | RAMP4 | Ribosome associated membrane protein RAMP4 |
| PF06628 | 3 | Catalase-rel | Catalase-related immune-responsive |
| PF06632 | 1 | XRCC4 | DNA double-strand break repair and V(D)J recombination protein XRCC4 |
| PF06644 | 1 | ATP11 | ATP11 protein |
| PF06645 | 1 | SPC12 | Microsomal signal peptidase 12 kDa subunit (SPC12) |
| PF06650 | 1 | SHR-BD | SHR-binding domain of vacuolar-sorting associated protein 13 |
| PF06657 | 1 | Cep57_MT_bd | Centrosome microtubule-binding domain of Cep57 |
| PF06658 | 1 | DUF1168 | Protein of unknown function (DUF1168) |
| PF06682 | 1 | SARAF | SOCE-associated regulatory factor of calcium homoeostasis |
| PF06687 | 9 | SUR7 | SUR7/PalI family |
| PF06699 | 1 | PIG-F | GPI biosynthesis protein family Pig-F |
| PF06703 | 1 | SPC25 | Microsomal signal peptidase 25 kDa subunit (SPC25) |
| PF06718 | 1 | DUF1203 | Protein of unknown function (DUF1203) |
| PF06723 | 6 | MreB_Mbl | MreB/Mbl protein |
| PF06726 | 1 | BC10 | Bladder cancer-related protein BC10 |
| PF06728 | 2 | PIG-U | GPI transamidase subunit PIG-U |
| PF06732 | 1 | Pescadillo_N | Pescadillo N-terminus |
| PF06733 | 2 | DEAD_2 | DEAD_2 |
| PF06738 | 3 | ThrE | Putative threonine/serine exporter |
| PF06741 | 1 | LsmAD | LsmAD domain |
| PF06742 | 2 | DUF1214 | Protein of unknown function (DUF1214) |
| PF06747 | 1 | CHCH | CHCH domain |
| PF06766 | 3 | Hydrophobin_2 | Fungal hydrophobin |
| PF06772 | 3 | LtrA | Bacterial low temperature requirement A protein (LtrA) |
| PF06775 | 1 | Seipin | Putative adipose-regulatory protein (Seipin) |
| PF06777 | 1 | HBB | Helical and beta-bridge domain |
| PF06779 | 2 | MFS_4 | Uncharacterised MFS-type transporter YbfB |
| PF06792 | 1 | UPF0261 | Uncharacterised protein family (UPF0261) |
| PF06807 | 1 | Clp1 | Pre-mRNA cleavage complex II protein Clp1 |
| PF06813 | 1 | Nodulin-like | Nodulin-like |
| PF06814 | 1 | Lung_7-TM_R | Lung seven transmembrane receptor |
| PF06824 | 3 | Glyco_hydro_125 | Metal-independent alpha-mannosidase (GH125) |
| PF06831 | 1 | H2TH | Formamidopyrimidine-DNA glycosylase H2TH domain |
| PF06839 | 2 | zf-GRF | GRF zinc finger |
| PF06858 | 1 | NOG1 | Nucleolar GTP-binding protein 1 (NOG1) |
| PF06862 | 1 | UTP25 | Utp25, U3 small nucleolar RNA-associated SSU processome protein 25 |
| PF06863 | 1 | DUF1254 | Protein of unknown function (DUF1254) |
| PF06870 | 1 | RNA_pol_I_A49 | A49-like RNA polymerase I associated factor |
| PF06881 | 1 | Elongin_A | RNA polymerase II transcription factor SIII (Elongin) subunit A |
| PF06883 | 1 | RNA_pol_Rpa2_4 | RNA polymerase I, Rpa2 specific domain |
| PF06884 | 2 | DUF1264 | Protein of unknown function (DUF1264) |
| PF06911 | 1 | Senescence | Senescence domain |
| PF06912 | 3 | DUF1275 | Protein of unknown function (DUF1275) |
| PF06916 | 1 | FAM210A-B_dom | FAM210A/B-like domain |
| PF06920 | 1 | DHR-2_Lobe_A | DHR-2, Lobe A |
| PF06957 | 1 | COPI_C | Coatomer (COPI) alpha subunit C-terminus |
| PF06963 | 1 | FPN1 | Ferroportin1 (FPN1) |
| PF06964 | 1 | Alpha-L-AF_C | Alpha-L-arabinofuranosidase C-terminal domain |
| PF06966 | 4 | DUF1295 | Protein of unknown function (DUF1295) |
| PF06968 | 1 | BATS | Biotin and Thiamin Synthesis associated domain |
| PF06978 | 1 | POP1 | Ribonucleases P/MRP protein subunit POP1 |
| PF06983 | 1 | 3-dmu-9_3-mt | 3-demethylubiquinone-9 3-methyltransferase |
| PF06984 | 1 | MRP-L47 | Mitochondrial 39-S ribosomal protein L47 (MRP-L47) |
| PF06985 | 28 | HET | Heterokaryon incompatibility protein (HET) |
| PF06991 | 1 | MFAP1 | Microfibril-associated/Pre-mRNA processing |
| PF06993 | 1 | DUF1304 | Protein of unknown function (DUF1304) |
| PF06999 | 2 | Suc_Fer-like | Sucrase/ferredoxin-like |
| PF07000 | 1 | DUF1308 | Protein of unknown function (DUF1308) |
| PF07005 | 1 | SBD_N | Sugar-binding N-terminal domain |
| PF07019 | 1 | EMC6 | EMC6 |
| PF07021 | 4 | MetW | Methionine biosynthesis protein MetW |
| PF07034 | 1 | ORC3_N | Origin recognition complex (ORC) subunit 3 N-terminus |
| PF07039 | 1 | DUF1325 | SGF29 tudor-like domain |
| PF07047 | 1 | OPA3 | Optic atrophy 3 protein (OPA3) |
| PF07064 | 1 | RIC1 | RIC1 |
| PF07065 | 1 | D123 | D123 |
| PF07075 | 1 | DUF1343 | Protein of unknown function (DUF1343) |
| PF07080 | 1 | DUF1348 | Protein of unknown function (DUF1348) |
| PF07081 | 1 | DUF1349 | Protein of unknown function (DUF1349) |
| PF07093 | 1 | SGT1 | SGT1 protein |
| PF07103 | 1 | DUF1365 | Protein of unknown function (DUF1365) |
| PF07110 | 2 | EthD | EthD domain |
| PF07156 | 1 | Prenylcys_lyase | Prenylcysteine lyase |
| PF07171 | 1 | MlrC_C | MlrC C-terminus |
| PF07173 | 4 | GRDP-like | Glycine-rich domain-containing protein-like |
| PF07189 | 1 | SF3b10 | Splicing factor 3B subunit 10 (SF3b10) |
| PF07200 | 1 | Mod_r | Modifier of rudimentary (Mod(r)) protein |
| PF07217 | 2 | Het-C | Heterokaryon incompatibility protein Het-C |
| PF07228 | 1 | SpoIIE | Stage II sporulation protein E (SpoIIE) |
| PF07247 | 4 | AATase | Alcohol acetyltransferase |
| PF07249 | 4 | Cerato-platanin | Cerato-platanin |
| PF07250 | 1 | Glyoxal_oxid_N | Glyoxal oxidase N-terminus |
| PF07264 | 3 | EI24 | Etoposide-induced protein 2.4 (EI24) |
| PF07281 | 1 | INSIG | Insulin-induced protein (INSIG) |
| PF07286 | 1 | D-Glu_cyclase | D-glutamate cyclase |
| PF07287 | 2 | AtuA | Acyclic terpene utilisation family protein AtuA |
| PF07297 | 1 | DPM2 | Dolichol phosphate-mannose biosynthesis regulatory protein (DPM2) |
| PF07304 | 1 | SRA1 | Steroid receptor RNA activator (SRA1) |
| PF07335 | 4 | Glyco_hydro_75 | Fungal chitosanase of glycosyl hydrolase group 75 |
| PF07350 | 3 | DUF1479 | Protein of unknown function (DUF1479) |
| PF07364 | 1 | DUF1485 | Metallopeptidase family M81 |
| PF07366 | 1 | SnoaL | SnoaL-like polyketide cyclase |
| PF07393 | 2 | Sec10 | Exocyst complex component Sec10 |
| PF07426 | 1 | Dynactin_p22 | Dynactin subunit p22 |
| PF07470 | 4 | Glyco_hydro_88 | Glycosyl Hydrolase Family 88 |
| PF07478 | 8 | Dala_Dala_lig_C | D-ala D-ala ligase C-terminus |
| PF07479 | 1 | NAD_Gly3P_dh_C | NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus |
| PF07491 | 1 | PPI_Ypi1 | Protein phosphatase inhibitor |
| PF07492 | 1 | Trehalase_Ca-bi | Neutral trehalase Ca2+ binding domain |
| PF07500 | 2 | TFIIS_M | Transcription factor S-II (TFIIS), central domain |
| PF07504 | 2 | FTP | Fungalysin/Thermolysin Propeptide Motif |
| PF07510 | 1 | DUF1524 | Protein of unknown function (DUF1524) |
| PF07519 | 5 | Tannase | Tannase and feruloyl esterase |
| PF07521 | 2 | RMMBL | Zn-dependent metallo-hydrolase RNA specificity domain |
| PF07522 | 1 | DRMBL | DNA repair metallo-beta-lactamase |
| PF07524 | 3 | Bromo_TP | Bromodomain associated |
| PF07529 | 2 | HSA | HSA domain |
| PF07534 | 3 | TLD | TLD |
| PF07535 | 1 | zf-DBF | DBF zinc finger |
| PF07539 | 1 | DRIM | Down-regulated in metastasis |
| PF07540 | 1 | NOC3p | Nucleolar complex-associated protein |
| PF07541 | 1 | EIF_2_alpha | Eukaryotic translation initiation factor 2 alpha subunit |
| PF07542 | 1 | ATP12 | ATP12 chaperone protein |
| PF07543 | 1 | PGA2 | Protein trafficking PGA2 |
| PF07544 | 1 | Med9 | RNA polymerase II transcription mediator complex subunit 9 |
| PF07555 | 1 | NAGidase | beta-N-acetylglucosaminidase |
| PF07557 | 1 | Shugoshin_C | Shugoshin C terminus |
| PF07558 | 1 | Shugoshin_N | Shugoshin N-terminal coiled-coil region |
| PF07569 | 1 | Hira | TUP1-like enhancer of split |
| PF07571 | 1 | TAF6_C | TAF6 C-terminal HEAT repeat domain |
| PF07572 | 1 | BCNT | Bucentaur or craniofacial development |
| PF07574 | 1 | SMC_Nse1 | Nse1 non-SMC component of SMC5-6 complex |
| PF07575 | 1 | Nucleopor_Nup85 | Nup85 Nucleoporin |
| PF07576 | 1 | BRAP2 | BRCA1-associated protein 2 |
| PF07646 | 4 | Kelch_2 | Kelch motif |
| PF07647 | 7 | SAM_2 | SAM domain (Sterile alpha motif) |
| PF07650 | 1 | KH_2 | KH domain |
| PF07651 | 2 | ANTH | ANTH domain |
| PF07653 | 14 | SH3_2 | Variant SH3 domain |
| PF07662 | 1 | Nucleos_tra2_C | Na+ dependent nucleoside transporter C-terminus |
| PF07676 | 7 | PD40 | WD40-like Beta Propeller Repeat |
| PF07683 | 1 | CobW_C | Cobalamin synthesis protein cobW C-terminal domain |
| PF07687 | 11 | M20_dimer | Peptidase dimerisation domain |
| PF07690 | 395 | MFS_1 | Major Facilitator Superfamily |
| PF07691 | 3 | PA14 | PA14 domain |
| PF07713 | 1 | DUF1604 | Protein of unknown function (DUF1604) |
| PF07714 | 132 | PK_Tyr_Ser-Thr | Protein tyrosine and serine/threonine kinase |
| PF07716 | 14 | bZIP_2 | Basic region leucine zipper |
| PF07717 | 8 | OB_NTP_bind | Oligonucleotide/oligosaccharide-binding (OB)-fold |
| PF07718 | 1 | Coatamer_beta_C | Coatomer beta C-terminal region |
| PF07719 | 6 | TPR_2 | Tetratricopeptide repeat |
| PF07721 | 13 | TPR_4 | Tetratricopeptide repeat |
| PF07722 | 3 | Peptidase_C26 | Peptidase C26 |
| PF07724 | 6 | AAA_2 | AAA domain (Cdc48 subfamily) |
| PF07726 | 1 | AAA_3 | ATPase family associated with various cellular activities (AAA) |
| PF07727 | 15 | RVT_2 | Reverse transcriptase (RNA-dependent DNA polymerase) |
| PF07728 | 24 | AAA_5 | AAA domain (dynein-related subfamily) |
| PF07731 | 16 | Cu-oxidase_2 | Multicopper oxidase |
| PF07732 | 12 | Cu-oxidase_3 | Multicopper oxidase |
| PF07738 | 1 | Sad1_UNC | Sad1 / UNC-like C-terminal |
| PF07741 | 1 | BRF1 | Brf1-like TBP-binding domain |
| PF07743 | 1 | HSCB_C | HSCB C-terminal oligomerisation domain |
| PF07744 | 1 | SPOC | SPOC domain |
| PF07748 | 1 | Glyco_hydro_38C | Glycosyl hydrolases family 38 C-terminal domain |
| PF07749 | 1 | ERp29 | Endoplasmic reticulum protein ERp29, C-terminal domain |
| PF07757 | 1 | AdoMet_MTase | Predicted AdoMet-dependent methyltransferase |
| PF07766 | 2 | LETM1_RBD | LETM1-like, RBD |
| PF07767 | 1 | Nop53 | Nop53 (60S ribosomal biogenesis) |
| PF07774 | 1 | EMC1_C | ER membrane protein complex subunit 1, C-terminal |
| PF07778 | 2 | CENP-I | Mis6 |
| PF07779 | 1 | Cas1_AcylT | 10 TM Acyl Transferase domain found in Cas1p |
| PF07780 | 1 | Spb1_C | Spb1 C-terminal domain |
| PF07792 | 1 | Afi1 | Docking domain of Afi1 for Arf3 in vesicle trafficking |
| PF07798 | 2 | CCDC90-like | Coiled-coil domain-containing protein 90-like |
| PF07808 | 1 | RED_N | RED-like protein N-terminal region |
| PF07814 | 1 | WAPL | Wings apart-like protein regulation of heterochromatin |
| PF07817 | 1 | GLE1 | GLE1-like protein |
| PF07818 | 1 | HCNGP | HCNGP-like protein |
| PF07819 | 2 | PGAP1 | PGAP1-like protein |
| PF07842 | 1 | GCFC | GC-rich sequence DNA-binding factor-like protein |
| PF07855 | 1 | ATG101 | Autophagy-related protein 101 |
| PF07859 | 34 | Abhydrolase_3 | alpha/beta hydrolase fold |
| PF07876 | 7 | Dabb | Stress responsive A/B Barrel Domain |
| PF07883 | 12 | Cupin_2 | Cupin domain |
| PF07885 | 4 | Ion_trans_2 | Ion channel |
| PF07890 | 1 | Rrp15p | Rrp15p |
| PF07896 | 1 | DUF1674 | Protein of unknown function (DUF1674) |
| PF07904 | 1 | Eaf7 | Chromatin modification-related protein EAF7 |
| PF07910 | 1 | Peptidase_C78 | Peptidase family C78 |
| PF07914 | 1 | DUF1679 | Uncharacterized oxidoreductase dhs-27 |
| PF07915 | 1 | PRKCSH | Glucosidase II beta subunit-like protein |
| PF07919 | 1 | Gryzun | Gryzun, putative trafficking through Golgi |
| PF07923 | 1 | N1221 | N1221-like protein |
| PF07926 | 1 | TPR_MLP1_2 | TPR/MLP1/MLP2-like protein |
| PF07928 | 1 | Vps54 | Vps54-like protein |
| PF07929 | 1 | PRiA4_ORF3 | Plasmid pRiA4b ORF-3-like protein |
| PF07931 | 1 | CPT | Chloramphenicol phosphotransferase-like protein |
| PF07933 | 1 | DUF1681 | Protein of unknown function (DUF1681) |
| PF07934 | 1 | OGG_N | 8-oxoguanine DNA glycosylase, N-terminal domain |
| PF07938 | 2 | Fungal_lectin | Fungal fucose-specific lectin |
| PF07942 | 2 | CARME | Carnosine N-methyltransferase |
| PF07944 | 2 | Glyco_hydro_127 | Beta-L-arabinofuranosidase, GH127 |
| PF07946 | 1 | CCDC47 | PAT complex subunit CCDC47 |
| PF07947 | 1 | YhhN | YhhN family |
| PF07950 | 1 | MCP1_TM | MDM10-complementing protein 1, transmembrane domain |
| PF07955 | 1 | DUF1687 | Protein of unknown function (DUF1687) |
| PF07956 | 1 | DUF1690 | Protein of Unknown function (DUF1690) |
| PF07958 | 1 | DUF1688 | Protein of unknown function (DUF1688) |
| PF07960 | 1 | CBP4 | CBP4 |
| PF07962 | 1 | Swi3 | Replication Fork Protection Component Swi3 |
| PF07967 | 1 | zf-C3HC | C3HC zinc finger-like |
| PF07969 | 16 | Amidohydro_3 | Amidohydrolase family |
| PF07970 | 2 | COPIIcoated_ERV | Endoplasmic reticulum vesicle transporter |
| PF07971 | 6 | Glyco_hydro_92 | Glycosyl hydrolase family 92 |
| PF07973 | 3 | tRNA_SAD | Threonyl and Alanyl tRNA synthetase second additional domain |
| PF07974 | 1 | EGF_2 | EGF-like domain |
| PF07975 | 1 | C1_4 | TFIIH C1-like domain |
| PF07976 | 3 | Phe_hydrox_dim | Phenol hydroxylase, C-terminal dimerisation domain |
| PF07978 | 2 | NIPSNAP | NIPSNAP |
| PF07983 | 2 | X8 | X8 domain |
| PF07985 | 2 | SRR1 | SRR1 domain |
| PF07986 | 1 | TBCC | Tubulin binding cofactor C |
| PF07989 | 2 | Cnn_1N | Centrosomin N-terminal motif 1 |
| PF07991 | 1 | IlvN | Acetohydroxy acid isomeroreductase, NADPH-binding domain |
| PF07992 | 46 | Pyr_redox_2 | Pyridine nucleotide-disulphide oxidoreductase |
| PF07993 | 26 | NAD_binding_4 | Male sterility protein |
| PF07994 | 1 | NAD_binding_5 | Myo-inositol-1-phosphate synthase |
| PF08003 | 5 | Methyltransf_9 | Protein of unknown function (DUF1698) |
| PF08022 | 15 | FAD_binding_8 | FAD-binding domain |
| PF08028 | 7 | Acyl-CoA_dh_2 | Acyl-CoA dehydrogenase, C-terminal domain |
| PF08029 | 1 | HisG_C | HisG, C-terminal domain |
| PF08030 | 13 | NAD_binding_6 | Ferric reductase NAD binding domain |
| PF08031 | 16 | BBE | Berberine and berberine like |
| PF08032 | 1 | SpoU_sub_bind | RNA 2'-O ribose methyltransferase substrate binding |
| PF08033 | 3 | Sec23_BS | Sec23/Sec24 beta-sandwich domain |
| PF08038 | 1 | Tom7 | TOM7 family |
| PF08045 | 1 | CDC14 | Cell division control protein 14, SIN component |
| PF08058 | 1 | NPCC | Nuclear pore complex component |
| PF08059 | 1 | SEP | SEP domain |
| PF08064 | 1 | UME | UME (NUC010) domain |
| PF08066 | 1 | PMC2NT | PMC2NT (NUC016) domain |
| PF08068 | 1 | DKCLD | DKCLD (NUC011) domain |
| PF08069 | 1 | Ribosomal_S13_N | Ribosomal S13/S15 N-terminal domain |
| PF08071 | 1 | RS4NT | RS4NT (NUC023) domain |
| PF08079 | 1 | Ribosomal_L30_N | Ribosomal L30 N-terminal domain |
| PF08082 | 1 | PRO8NT | PRO8NT (NUC069), PrP8 N-terminal domain |
| PF08083 | 1 | PROCN | PROCN (NUC071) domain |
| PF08084 | 1 | PROCT | PROCT (NUC072) domain |
| PF08101 | 1 | Msb1-Mug8_dom | Meiotically up-regulated protein Msb1/Mug8 domain |
| PF08118 | 1 | MDM31_MDM32 | Yeast mitochondrial distribution and morphology (MDM) proteins |
| PF08122 | 1 | NDUF_B12 | NADH-ubiquinone oxidoreductase B12 subunit family |
| PF08123 | 1 | DOT1 | Histone methylation protein DOT1 |
| PF08124 | 1 | Lyase_8_N | Polysaccharide lyase family 8, N terminal alpha-helical domain |
| PF08125 | 1 | Mannitol_dh_C | Mannitol dehydrogenase C-terminal domain |
| PF08142 | 2 | AARP2CN | AARP2CN (NUC121) domain |
| PF08144 | 1 | CPL | CPL (NUC119) domain |
| PF08145 | 1 | BOP1NT | BOP1NT (NUC169) domain |
| PF08146 | 1 | BP28CT | BP28CT (NUC211) domain |
| PF08147 | 1 | DBP10CT | DBP10CT (NUC160) domain |
| PF08148 | 2 | DSHCT | DSHCT (NUC185) domain |
| PF08149 | 1 | BING4CT | BING4CT (NUC141) domain |
| PF08153 | 1 | NGP1NT | NGP1NT (NUC091) domain |
| PF08155 | 1 | NOGCT | NOGCT (NUC087) domain |
| PF08156 | 2 | NOP5NT | NOP5NT (NUC127) domain |
| PF08158 | 1 | NUC130_3NT | NUC130/3NT domain |
| PF08159 | 2 | NUC153 | NUC153 domain |
| PF08161 | 1 | NUC173 | NUC173 domain |
| PF08164 | 1 | TRAUB | Apoptosis-antagonizing transcription factor, C-terminal |
| PF08167 | 1 | RIX1 | rRNA processing/ribosome biogenesis |
| PF08170 | 1 | POPLD | POPLD (NUC188) domain |
| PF08171 | 1 | Mad3_BUB1_II | Mad3/BUB1 homology region 2 |
| PF08172 | 1 | CASP_C | CASP C terminal |
| PF08174 | 1 | Anillin | Cell division protein anillin |
| PF08193 | 1 | INO80_Ies4 | INO80 complex subunit Ies4 |
| PF08202 | 2 | MIS13 | Mis12-Mtw1 protein family |
| PF08208 | 1 | RNA_polI_A34 | DNA-directed RNA polymerase I subunit RPA34.5 |
| PF08213 | 1 | COX24_C | Mitochondrial mRNA-processing protein COX24, C-terminal |
| PF08214 | 1 | HAT_KAT11 | Histone acetylation protein |
| PF08216 | 1 | CTNNBL | Catenin-beta-like, Arm-motif containing nuclear |
| PF08219 | 1 | TOM13 | Outer membrane protein TOM13 |
| PF08221 | 1 | HTH_9 | RNA polymerase III subunit RPC82 helix-turn-helix domain |
| PF08226 | 1 | DUF1720 | Domain of unknown function (DUF1720) |
| PF08228 | 1 | RNase_P_pop3 | RNase P subunit Pop3 |
| PF08229 | 1 | SHR3_chaperone | ER membrane protein SH3 |
| PF08231 | 1 | SYF2 | SYF2 splicing factor |
| PF08232 | 1 | Striatin | Striatin family |
| PF08234 | 1 | Spindle_Spc25 | Chromosome segregation protein Spc25 |
| PF08235 | 1 | LNS2 | LNS2 (Lipin/Ned1/Smp2) |
| PF08236 | 1 | SRI | SRI (Set2 Rpb1 interacting) domain |
| PF08238 | 36 | Sel1 | Sel1 repeat |
| PF08240 | 41 | ADH_N | Alcohol dehydrogenase GroES-like domain |
| PF08241 | 87 | Methyltransf_11 | Methyltransferase domain |
| PF08242 | 50 | Methyltransf_12 | Methyltransferase domain |
| PF08243 | 1 | SPT2 | SPT2 chromatin protein |
| PF08244 | 3 | Glyco_hydro_32C | Glycosyl hydrolases family 32 C terminal |
| PF08245 | 1 | Mur_ligase_M | Mur ligase middle domain |
| PF08264 | 6 | Anticodon_1 | Anticodon-binding domain of tRNA ligase |
| PF08265 | 2 | YL1_C | YL1 nuclear protein C-terminal domain |
| PF08267 | 1 | Meth_synt_1 | Cobalamin-independent synthase, N-terminal domain |
| PF08271 | 1 | TF_Zn_Ribbon | TFIIB zinc-binding |
| PF08282 | 15 | Hydrolase_3 | haloacid dehalogenase-like hydrolase |
| PF08284 | 2 | RVP_2 | Retroviral aspartyl protease |
| PF08285 | 1 | DPM3 | Dolichol-phosphate mannosyltransferase subunit 3 (DPM3) |
| PF08286 | 1 | Spc24 | Spc24 subunit of Ndc80 |
| PF08287 | 1 | DASH_Spc19 | Spc19 |
| PF08288 | 1 | PIGA | PIGA (GPI anchor biosynthesis) |
| PF08292 | 1 | RNA_pol_Rbc25 | RNA polymerase III subunit Rpc25 |
| PF08293 | 1 | MRP-S33 | Mitochondrial ribosomal subunit S27 |
| PF08294 | 1 | TIM21 | TIM21 |
| PF08295 | 1 | Sin3_corepress | Sin3 family co-repressor |
| PF08297 | 1 | U3_snoRNA_assoc | U3 snoRNA associated |
| PF08302 | 1 | tRNA_lig_CPD | Fungal tRNA ligase phosphodiesterase domain |
| PF08303 | 1 | tRNA_lig_kinase | tRNA ligase kinase domain |
| PF08311 | 1 | Mad3_BUB1_I | Mad3/BUB1 homology region 1 |
| PF08312 | 1 | cwf21 | cwf21 domain |
| PF08313 | 1 | SCA7 | SCA7, zinc-binding domain |
| PF08314 | 1 | Sec39 | Secretory pathway protein Sec39 |
| PF08315 | 1 | cwf18 | cwf18 pre-mRNA splicing factor |
| PF08316 | 1 | Pal1 | Pal1 cell morphology protein |
| PF08317 | 1 | Spc7 | Spc7 kinetochore protein |
| PF08318 | 1 | COG4 | COG4 transport protein |
| PF08321 | 1 | PPP5 | PPP5 TPR repeat region |
| PF08324 | 2 | PUL | PUL domain |
| PF08325 | 2 | WLM | WLM domain |
| PF08326 | 1 | ACC_central | Acetyl-CoA carboxylase, central region |
| PF08327 | 2 | AHSA1 | Activator of Hsp90 ATPase homolog 1-like protein |
| PF08351 | 1 | TmcA_N | tRNA(Met) cytidine acetyltransferase TmcA, N-terminal |
| PF08354 | 1 | DUF1729 | Domain of unknown function (DUF1729) |
| PF08355 | 1 | EF_assoc_1 | EF hand associated |
| PF08356 | 1 | EF_assoc_2 | EF hand associated |
| PF08367 | 1 | M16C_assoc | Peptidase M16C associated |
| PF08375 | 1 | Rpn3_C | Proteasome regulatory subunit C-terminal |
| PF08385 | 1 | DHC_N1 | Dynein heavy chain, N-terminal region 1 |
| PF08386 | 11 | Abhydrolase_4 | TAP-like protein |
| PF08389 | 3 | Xpo1 | Exportin 1-like protein |
| PF08390 | 4 | TRAM1 | TRAM1-like protein |
| PF08392 | 1 | FAE1_CUT1_RppA | FAE1/Type III polyketide synthase-like protein |
| PF08393 | 1 | DHC_N2 | Dynein heavy chain, N-terminal region 2 |
| PF08407 | 3 | Chitin_synth_1N | Chitin synthase N-terminal |
| PF08418 | 1 | Pol_alpha_B_N | DNA polymerase alpha subunit B N-terminal |
| PF08423 | 3 | Rad51 | Rad51 |
| PF08424 | 1 | NRDE-2 | NRDE-2, necessary for RNA interference |
| PF08426 | 1 | ICE2 | ICE2 |
| PF08427 | 1 | ARMH3_C | Armadillo-like helical domain-containing protein 3, C-terminal |
| PF08429 | 1 | PLU-1 | PLU-1-like protein |
| PF08432 | 1 | Vfa1 | AAA-ATPase Vps4-associated protein 1 |
| PF08433 | 2 | KTI12 | Chromatin associated protein KTI12 |
| PF08438 | 1 | MMR_HSR1_C | GTPase of unknown function C-terminal |
| PF08442 | 3 | ATP-grasp_2 | ATP-grasp domain |
| PF08443 | 1 | RimK | RimK-like ATP-grasp domain |
| PF08445 | 11 | FR47 | FR47-like protein |
| PF08446 | 1 | PAS_2 | PAS fold |
| PF08447 | 6 | PAS_3 | PAS fold |
| PF08448 | 3 | PAS_4 | PAS fold |
| PF08449 | 2 | UAA | UAA transporter family |
| PF08450 | 2 | SGL | SMP-30/Gluconolactonase/LRE-like region |
| PF08457 | 1 | Sfi1 | Sfi1 spindle body protein |
| PF08477 | 34 | Roc | Ras of Complex, Roc, domain of DAPkinase |
| PF08487 | 2 | VIT | Vault protein inter-alpha-trypsin domain |
| PF08490 | 1 | DUF1744 | Domain of unknown function (DUF1744) |
| PF08491 | 3 | SE | Squalene epoxidase |
| PF08492 | 1 | SRP72 | SRP72 RNA-binding domain |
| PF08493 | 2 | AflR | Aflatoxin regulatory protein |
| PF08498 | 2 | Sterol_MT_C | Sterol methyltransferase C-terminal |
| PF08501 | 3 | Shikimate_dh_N | Shikimate dehydrogenase substrate binding domain |
| PF08502 | 1 | LeuA_dimer | LeuA allosteric (dimerisation) domain |
| PF08506 | 2 | Cse1 | Cse1 |
| PF08507 | 1 | COPI_assoc | COPI associated protein |
| PF08508 | 1 | DUF1746 | Fungal domain of unknown function (DUF1746) |
| PF08509 | 1 | Ad_cyc_g-alpha | Adenylate cyclase G-alpha binding domain |
| PF08510 | 1 | PIG-P | PIG-P |
| PF08511 | 1 | COQ9 | COQ9 |
| PF08512 | 3 | Rtt106 | Histone chaperone Rttp106-like |
| PF08513 | 1 | LisH | LisH |
| PF08514 | 1 | STAG | STAG domain |
| PF08518 | 2 | GIT_SHD | Spa2 homology domain (SHD) of GIT |
| PF08519 | 1 | RFC1 | Replication factor RFC1 C terminal domain |
| PF08523 | 1 | MBF1 | Multiprotein bridging factor 1 |
| PF08528 | 3 | Whi5 | Whi5 like |
| PF08530 | 2 | PepX_C | X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain |
| PF08531 | 1 | Bac_rhamnosid_N | Alpha-L-rhamnosidase N-terminal domain |
| PF08534 | 6 | Redoxin | Redoxin |
| PF08538 | 2 | DUF1749 | Protein of unknown function (DUF1749) |
| PF08539 | 1 | HbrB | HbrB-like |
| PF08540 | 1 | HMG_CoA_synt_C | Hydroxymethylglutaryl-coenzyme A synthase C terminal |
| PF08542 | 3 | Rep_fac_C | Replication factor C C-terminal domain |
| PF08543 | 2 | Phos_pyr_kin | Phosphomethylpyrimidine kinase |
| PF08544 | 3 | GHMP_kinases_C | GHMP kinases C terminal |
| PF08546 | 3 | ApbA_C | Ketopantoate reductase PanE/ApbA C terminal |
| PF08547 | 2 | CIA30 | Complex I intermediate-associated protein 30 (CIA30) |
| PF08549 | 1 | SWI-SNF_Ssr4_N | SWI/SNF and RSC complexes subunit Ssr4 N-terminal |
| PF08550 | 3 | DUF1752 | Fungal protein of unknown function (DUF1752) |
| PF08551 | 1 | DUF1751 | Eukaryotic integral membrane protein (DUF1751) |
| PF08552 | 1 | Kei1 | Inositolphosphorylceramide synthase subunit Kei1 |
| PF08553 | 1 | VID27 | VID27 C-terminal WD40-like domain |
| PF08555 | 1 | FAM32A | FAM32A |
| PF08557 | 1 | Lipid_DES | Sphingolipid Delta4-desaturase (DES) |
| PF08558 | 1 | TRF | Telomere repeat binding factor (TRF) |
| PF08559 | 1 | Cut8 | Cut8, nuclear proteasome tether protein |
| PF08560 | 1 | DUF1757 | Protein of unknown function (DUF1757) |
| PF08561 | 1 | Ribosomal_L37 | Mitochondrial ribosomal protein L37 |
| PF08564 | 1 | CDC37_C | Cdc37 C terminal domain |
| PF08565 | 1 | CDC37_M | Cdc37 Hsp90 binding domain |
| PF08566 | 1 | Pam17 | Mitochondrial import protein Pam17 |
| PF08567 | 1 | PH_TFIIH | TFIIH p62 subunit, N-terminal domain |
| PF08568 | 1 | Kinetochor_Ybp2 | Uncharacterised protein family, YAP/Alf4/glomulin |
| PF08569 | 1 | Mo25 | Mo25-like |
| PF08570 | 1 | DUF1761 | Protein of unknown function (DUF1761) |
| PF08571 | 1 | Yos1 | Yos1-like |
| PF08572 | 1 | PRP3 | pre-mRNA processing factor 3 (PRP3) |
| PF08573 | 1 | SAE2 | DNA endonuclease activator SAE2/CtIP C-terminus |
| PF08574 | 1 | Iwr1 | Transcription factor Iwr1 |
| PF08577 | 1 | PI31_Prot_C | PI31 proteasome regulator |
| PF08578 | 1 | DUF1765 | Protein of unknown function (DUF1765) |
| PF08580 | 1 | KAR9 | Yeast cortical protein KAR9 |
| PF08581 | 1 | Tup_N | Tup N-terminal |
| PF08583 | 2 | Cmc1 | Cytochrome c oxidase biogenesis protein Cmc1 like |
| PF08584 | 1 | Ribonuc_P_40 | Ribonuclease P 40kDa (Rpp40) subunit |
| PF08585 | 1 | RMI1_N | RecQ mediated genome instability protein |
| PF08587 | 1 | UBA_2 | Ubiquitin associated domain (UBA) |
| PF08588 | 1 | DUF1769 | Protein of unknown function (DUF1769) |
| PF08589 | 1 | ATG43 | Autophagy receptor ATG43 |
| PF08590 | 2 | DUF1771 | Domain of unknown function (DUF1771) |
| PF08591 | 1 | RNR_inhib | Ribonucleotide reductase inhibitor |
| PF08592 | 3 | Anthrone_oxy | Anthrone oxygenase |
| PF08593 | 1 | DUF1773 | Domain of unknown function |
| PF08595 | 1 | RXT2_N | RXT2-like, N-terminal |
| PF08596 | 1 | Lgl_C | Lethal giant larvae(Lgl) like, C-terminal |
| PF08597 | 1 | eIF3_subunit | Translation initiation factor eIF3 subunit |
| PF08598 | 2 | Sds3 | Sds3-like |
| PF08600 | 1 | Rsm1 | Rsm1-like |
| PF08601 | 2 | PAP1 | Transcription factor PAP1 |
| PF08603 | 1 | CAP_C | Adenylate cyclase associated (CAP) C terminal |
| PF08606 | 1 | Prp19 | Prp19/Pso4-like |
| PF08608 | 1 | Wyosine_form | Wyosine base formation |
| PF08609 | 1 | Fes1 | Nucleotide exchange factor Fes1 |
| PF08610 | 2 | Pex16 | Peroxisomal membrane protein (Pex16) |
| PF08611 | 5 | DUF1774 | Fungal protein of unknown function (DUF1774) |
| PF08613 | 11 | Cyclin | Cyclin |
| PF08614 | 1 | ATG16 | Autophagy protein 16 (ATG16) |
| PF08615 | 1 | RNase_H2_suC | Ribonuclease H2 non-catalytic subunit (Ylr154p-like) |
| PF08616 | 1 | SPA | Stabilization of polarity axis |
| PF08617 | 1 | CGI-121 | Kinase binding protein CGI-121 |
| PF08618 | 2 | Opi1 | Transcription factor Opi1 |
| PF08619 | 1 | Nha1_C | Alkali metal cation/H+ antiporter Nha1 C terminus |
| PF08620 | 1 | RPAP1_C | RPAP1-like, C-terminal |
| PF08621 | 1 | RPAP1_N | RPAP1-like, N-terminal |
| PF08622 | 1 | Svf1 | Svf1-like N-terminal lipocalin domain |
| PF08623 | 1 | TIP120 | TATA-binding protein interacting (TIP20) |
| PF08624 | 8 | CRC_subunit | Chromatin remodelling complex Rsc7/Swp82 subunit |
| PF08625 | 1 | Utp13 | Utp13 specific WD40 associated domain |
| PF08626 | 1 | TRAPPC9-Trs120 | Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit |
| PF08627 | 1 | CRT-like | CRT-like, chloroquine-resistance transporter-like |
| PF08628 | 2 | Nexin_C | Sorting nexin C terminal |
| PF08630 | 1 | Dfp1_Him1_M | Dfp1/Him1, central region |
| PF08631 | 1 | SPO22 | Meiosis protein SPO22/ZIP4 like |
| PF08632 | 1 | Zds_C | Activator of mitotic machinery Cdc14 phosphatase activation C-term |
| PF08634 | 1 | Pet127 | Mitochondrial protein Pet127 |
| PF08636 | 1 | Pkr1 | ER protein Pkr1 |
| PF08637 | 1 | NCA2 | ATP synthase regulation protein NCA2 |
| PF08638 | 1 | Med14 | Mediator complex subunit MED14 |
| PF08639 | 1 | SLD3 | DNA replication regulator SLD3 |
| PF08640 | 1 | U3_assoc_6 | U3 small nucleolar RNA-associated protein 6 |
| PF08641 | 1 | Mis14 | Kinetochore protein Mis14 like |
| PF08642 | 1 | Rxt3 | Histone deacetylation protein Rxt3 |
| PF08643 | 1 | DUF1776 | Fungal family of unknown function (DUF1776) |
| PF08644 | 1 | SPT16 | FACT complex subunit (SPT16/CDC68) |
| PF08645 | 1 | PNK3P | Polynucleotide kinase 3 phosphatase |
| PF08646 | 1 | Rep_fac-A_C | Replication factor-A C terminal domain |
| PF08647 | 1 | BRE1 | BRE1 E3 ubiquitin ligase |
| PF08648 | 1 | SNRNP27 | U4/U6.U5 small nuclear ribonucleoproteins |
| PF08649 | 1 | DASH_Dad1 | DASH complex subunit Dad1 |
| PF08650 | 1 | DASH_Dad4 | DASH complex subunit Dad4 |
| PF08651 | 1 | DASH_Duo1 | DASH complex subunit Duo1 |
| PF08652 | 1 | RAI1 | RAI1 like PD-(D/E)XK nuclease |
| PF08653 | 1 | DASH_Dam1 | DASH complex subunit Dam1 |
| PF08654 | 1 | DASH_Dad2 | DASH complex subunit Dad2 |
| PF08656 | 1 | DASH_Dad3 | DASH complex subunit Dad3 |
| PF08657 | 2 | DASH_Spc34 | DASH complex subunit Spc34 |
| PF08658 | 1 | Rad54_N | Rad54 N terminal |
| PF08659 | 104 | KR | KR domain |
| PF08660 | 1 | Alg14 | Oligosaccharide biosynthesis protein Alg14 like |
| PF08661 | 1 | Rep_fac-A_3 | Replication factor A protein 3 |
| PF08662 | 3 | eIF2A | Eukaryotic translation initiation factor eIF2A |
| PF08669 | 2 | GCV_T_C | Glycine cleavage T-protein C-terminal barrel domain |
| PF08672 | 1 | ANAPC2 | Anaphase promoting complex (APC) subunit 2 |
| PF08676 | 2 | MutL_C | MutL C terminal dimerisation domain |
| PF08689 | 1 | Med5 | Mediator complex subunit Med5 |
| PF08690 | 1 | GET2 | GET complex subunit GET2 |
| PF08695 | 1 | Coa1 | Cytochrome oxidase complex assembly protein 1 |
| PF08696 | 1 | Dna2 | DNA replication factor Dna2 |
| PF08698 | 1 | Fcf2 | Fcf2 pre-rRNA processing |
| PF08699 | 4 | ArgoL1 | Argonaute linker 1 domain |
| PF08700 | 3 | Vps51 | Vps51/Vps67 |
| PF08701 | 1 | GN3L_Grn1 | GNL3L/Grn1 putative GTPase |
| PF08704 | 2 | GCD14 | tRNA methyltransferase complex GCD14 subunit |
| PF08711 | 4 | Med26 | TFIIS helical bundle-like domain |
| PF08712 | 1 | Nfu_N | Scaffold protein Nfu/NifU N terminal |
| PF08718 | 1 | GLTP | Glycolipid transfer protein (GLTP) |
| PF08719 | 2 | NADAR | NADAR domain |
| PF08726 | 1 | EFhand_Ca_insen | Ca2+ insensitive EF hand |
| PF08728 | 1 | CRT10 | CRT10 |
| PF08729 | 1 | HUN | HPC2 and ubinuclein domain |
| PF08732 | 1 | HIM1 | HIM1 |
| PF08733 | 1 | PalH | PalH/RIM21 |
| PF08737 | 1 | Rgp1 | Rgp1 |
| PF08738 | 1 | Gon7 | Gon7 family |
| PF08740 | 4 | BCS1_N | BCS1 N terminal |
| PF08743 | 1 | Nse4_C | Nse4 C-terminal |
| PF08746 | 1 | zf-RING-like | RING-like domain |
| PF08752 | 1 | COP-gamma_platf | Coatomer gamma subunit appendage platform subdomain |
| PF08755 | 1 | YccV-like | Hemimethylated DNA-binding protein YccV like |
| PF08760 | 2 | DUF1793 | Domain of unknown function (DUF1793) |
| PF08766 | 3 | DEK_C | DEK C terminal domain |
| PF08767 | 1 | CRM1_C | CRM1 C terminal |
| PF08771 | 1 | FRB_dom | FKBP12-rapamycin binding domain |
| PF08772 | 1 | NOB1_Zn_bind | Nin one binding (NOB1) Zn-ribbon like |
| PF08774 | 1 | VRR_NUC | VRR-NUC domain |
| PF08783 | 1 | DWNN | DWNN domain |
| PF08784 | 1 | RPA_C | Replication protein A C terminal |
| PF08785 | 1 | Ku_PK_bind | Ku C terminal domain like |
| PF08787 | 1 | Alginate_lyase2 | Alginate lyase |
| PF08790 | 1 | zf-LYAR | LYAR-type C2HC zinc finger |
| PF08797 | 2 | HIRAN | HIRAN domain |
| PF08799 | 2 | PRP4 | pre-mRNA processing factor 4 (PRP4) like |
| PF08801 | 2 | Nucleoporin_N | Nup133 N terminal like |
| PF08825 | 1 | E2_bind | E2 binding domain |
| PF08840 | 2 | BAAT_C | BAAT / Acyl-CoA thioester hydrolase C terminal |
| PF08880 | 1 | QLQ | QLQ |
| PF08881 | 4 | CVNH | CVNH domain |
| PF08914 | 1 | Myb_DNA-bind_2 | Rap1 Myb domain |
| PF08920 | 1 | SF3b1 | Splicing factor 3B subunit 1 |
| PF08938 | 1 | HBS1_N | HBS1 N-terminus |
| PF08939 | 1 | DUF1917 | Domain of unknown function (DUF1917) |
| PF08953 | 1 | DUF1899 | Domain of unknown function (DUF1899) |
| PF08969 | 1 | USP8_dimer | USP8 dimerisation domain |
| PF08982 | 1 | AtaL | Acetylaranotin biosynthesis cluster protein L |
| PF08991 | 1 | MTCP1 | Mature-T-Cell Proliferation I type |
| PF08996 | 1 | zf-DNA_Pol | DNA Polymerase alpha zinc finger |
| PF09011 | 10 | HMG_box_2 | HMG-box domain |
| PF09044 | 13 | Kp4 | Kp4 |
| PF09056 | 3 | Phospholip_A2_3 | Prokaryotic phospholipase A2 |
| PF09070 | 1 | PFU | PFU (PLAA family ubiquitin binding) |
| PF09072 | 1 | TMA7 | Translation machinery associated TMA7 |
| PF09073 | 1 | BUD22 | BUD22 |
| PF09084 | 1 | NMT1 | NMT1/THI5 like |
| PF09088 | 1 | MIF4G_like | MIF4G like |
| PF09090 | 1 | MIF4G_like_2 | MIF4G like |
| PF09110 | 1 | HAND | HAND |
| PF09111 | 1 | SLIDE | SLIDE |
| PF09118 | 2 | GO-like_E_set | Galactose oxidase-like, Early set domain |
| PF09127 | 1 | Leuk-A4-hydro_C | Leukotriene A4 hydrolase, C-terminal |
| PF09130 | 1 | DUF1932 | Domain of unknown function (DUF1932) |
| PF09135 | 1 | Alb1 | Alb1 |
| PF09138 | 1 | Urm1 | Urm1 (Ubiquitin related modifier) |
| PF09139 | 1 | Tam41_Mmp37 | Phosphatidate cytidylyltransferase, mitochondrial |
| PF09140 | 1 | MipZ | ATPase MipZ |
| PF09154 | 1 | Alpha-amy_C_pro | Alpha-amylase C-terminal |
| PF09173 | 1 | eIF2_C | Initiation factor eIF2 gamma, C terminal |
| PF09174 | 1 | Maf1 | Maf1 regulator |
| PF09177 | 1 | Syntaxin-6_N | Syntaxin 6, N-terminal |
| PF09180 | 1 | ProRS-C_1 | Prolyl-tRNA synthetase, C-terminal |
| PF09184 | 1 | PPP4R2 | PPP4R2 |
| PF09197 | 1 | Rap1-DNA-bind | Rap1, DNA-binding |
| PF09202 | 1 | Rio2_N | Rio2, N-terminal |
| PF09206 | 2 | ArabFuran-catal | Alpha-L-arabinofuranosidase B, catalytic |
| PF09229 | 1 | Aha1_N | Activator of Hsp90 ATPase, N-terminal |
| PF09243 | 2 | Rsm22 | Mitochondrial small ribosomal subunit Rsm22 |
| PF09258 | 1 | Glyco_transf_64 | Glycosyl transferase family 64 domain |
| PF09261 | 1 | Alpha-mann_mid | Alpha mannosidase middle domain |
| PF09262 | 1 | PEX-1N | Peroxisome biogenesis factor 1, N-terminal |
| PF09273 | 1 | Rubis-subs-bind | Rubisco LSMT substrate-binding |
| PF09280 | 1 | XPC-binding | XPC-binding domain |
| PF09282 | 1 | Mago-bind | Mago binding |
| PF09286 | 9 | Pro-kuma_activ | Pro-kumamolisin, activation domain |
| PF09288 | 1 | UBA_3 | Fungal ubiquitin-associated domain |
| PF09295 | 1 | ChAPs | ChAPs (Chs5p-Arf1p-binding proteins) |
| PF09296 | 1 | NUDIX-like | NADH pyrophosphatase-like rudimentary NUDIX domain |
| PF09297 | 1 | zf-NADH-PPase | NADH pyrophosphatase zinc ribbon domain |
| PF09298 | 1 | FAA_hydrolase_N | Fumarylacetoacetase N-terminal |
| PF09302 | 1 | XLF | XLF-Cernunnos, XRcc4-like factor, NHEJ component |
| PF09320 | 1 | DUF1977 | Domain of unknown function (DUF1977) |
| PF09324 | 1 | DUF1981 | Domain of unknown function (DUF1981) |
| PF09325 | 2 | Vps5 | Vps5 C terminal like |
| PF09326 | 1 | NADH_dhqG_C | NADH-ubiquinone oxidoreductase subunit G, C-terminal |
| PF09329 | 1 | zf-primase | Primase zinc finger |
| PF09333 | 1 | ATG_C | Autophagy-related protein C terminal domain |
| PF09334 | 8 | tRNA-synt_1g | tRNA synthetases class I (M) |
| PF09335 | 1 | SNARE_assoc | SNARE associated Golgi protein |
| PF09336 | 2 | Vps4_C | Vps4 C terminal oligomerisation domain |
| PF09337 | 1 | zf-H2C2 | H2C2 zinc finger |
| PF09340 | 1 | NuA4 | Histone acetyltransferase subunit NuA4 |
| PF09341 | 1 | Pcc1 | Transcription factor Pcc1 |
| PF09346 | 1 | SMI1_KNR4 | SMI1 / KNR4 family (SUKH-1) |
| PF09347 | 1 | DUF1989 | Domain of unknown function (DUF1989) |
| PF09349 | 1 | OHCU_decarbox | OHCU decarboxylase |
| PF09350 | 1 | DJC28_CD | DnaJ homologue, subfamily C, member 28, conserved domain |
| PF09351 | 2 | DUF1993 | Domain of unknown function (DUF1993) |
| PF09358 | 1 | E1_UFD | Ubiquitin fold domain |
| PF09359 | 2 | VTC | VTC domain |
| PF09362 | 9 | DUF1996 | Domain of unknown function (DUF1996) |
| PF09363 | 1 | XFP_C | XFP C-terminal domain |
| PF09364 | 1 | XFP_N | XFP N-terminal domain |
| PF09365 | 1 | DUF2461 | Conserved hypothetical protein (DUF2461) |
| PF09368 | 1 | Sas10 | Sas10 C-terminal domain |
| PF09369 | 1 | MZB | MrfA Zn-binding domain |
| PF09370 | 1 | PEP_hydrolase | Phosphoenolpyruvate hydrolase-like |
| PF09377 | 1 | SBDS_domain_II | SBDS protein, domain II |
| PF09382 | 1 | RQC | RQC domain |
| PF09384 | 1 | UTP15_C | UTP15 C terminal |
| PF09402 | 1 | MSC | Man1-Src1p-C-terminal domain |
| PF09405 | 1 | Btz | CASC3/Barentsz eIF4AIII binding |
| PF09414 | 2 | RNA_ligase | RNA ligase |
| PF09415 | 1 | CENP-X | CENP-S associating Centromere protein X |
| PF09416 | 1 | UPF1_Zn_bind | RNA helicase (UPF2 interacting domain) |
| PF09419 | 1 | PGP_phosphatase | Mitochondrial PGP phosphatase |
| PF09420 | 1 | Nop16 | Ribosome biogenesis protein Nop16 |
| PF09421 | 4 | FRQ | Frequency clock protein |
| PF09423 | 2 | PhoD | PhoD-like phosphatase |
| PF09424 | 1 | YqeY | Yqey-like protein |
| PF09427 | 1 | DUF2014 | Domain of unknown function (DUF2014) |
| PF09428 | 1 | DUF2011 | Fungal protein of unknown function (DUF2011) |
| PF09429 | 1 | Wbp11 | WW domain binding protein 11 |
| PF09430 | 1 | EMC7_beta-sandw | ER membrane protein complex subunit 7, beta-sandwich domain |
| PF09431 | 1 | SPIN90_LRD | SPIN90/Ldb17, leucine-rich domain |
| PF09435 | 1 | DUF2015 | Fungal protein of unknown function (DUF2015) |
| PF09439 | 5 | SRPRB | Signal recognition particle receptor beta subunit |
| PF09440 | 1 | eIF3_N | eIF3 subunit 6 N terminal domain |
| PF09441 | 1 | Abp2 | ARS binding protein 2 |
| PF09444 | 1 | MRC1 | MRC1-like domain |
| PF09445 | 2 | Methyltransf_15 | RNA cap guanine-N2 methyltransferase |
| PF09446 | 1 | VMA21 | VMA21-like domain |
| PF09447 | 1 | Cnl2_NKP2 | Cnl2/NKP2 family protein |
| PF09451 | 2 | ATG27 | Autophagy-related protein 27 |
| PF09453 | 1 | HIRA_B | HIRA B motif |
| PF09454 | 1 | Vps23_core | Vps23 core domain |
| PF09458 | 3 | H_lectin | H-type lectin domain |
| PF09462 | 1 | Mus7 | Mus7/MMS22 family |
| PF09463 | 1 | Opy2 | Opy2 protein |
| PF09468 | 1 | RNase_H2-Ydr279 | Ydr279p protein family (RNase H2 complex component) wHTH domain |
| PF09494 | 1 | Slx4 | Slx4 endonuclease |
| PF09495 | 1 | DUF2462 | Protein of unknown function (DUF2462) |
| PF09496 | 1 | CENP-O | Cenp-O kinetochore centromere component |
| PF09497 | 1 | Med12 | Transcription mediator complex subunit Med12 |
| PF09507 | 1 | CDC27 | DNA polymerase subunit Cdc27 |
| PF09511 | 1 | RNA_lig_T4_1 | RNA ligase |
| PF09531 | 1 | Ndc1_Nup | Nucleoporin protein Ndc1-Nup |
| PF09532 | 2 | FDF | FDF domain |
| PF09597 | 1 | IGR | IGR protein motif |
| PF09598 | 1 | Stm1_N | Stm1 |
| PF09631 | 1 | Sen15 | Sen15 protein |
| PF09637 | 1 | Med18 | Med18 protein |
| PF09649 | 1 | CHZ | Histone chaperone domain CHZ |
| PF09668 | 1 | Asp_protease | Aspartyl protease |
| PF09692 | 1 | Arb1 | Argonaute siRNA chaperone (ARC) complex subunit Arb1 |
| PF09696 | 1 | Ctf8 | Ctf8 |
| PF09724 | 1 | Dcc1 | Sister chromatid cohesion protein Dcc1 |
| PF09728 | 1 | Taxilin | Myosin-like coiled-coil protein |
| PF09729 | 4 | Gti1_Pac2 | Gti1/Pac2 family |
| PF09731 | 2 | Mitofilin | Mitochondrial inner membrane protein |
| PF09732 | 1 | CactinC_cactus | Cactus-binding C-terminus of cactin protein |
| PF09733 | 1 | VEFS-Box | VEFS-Box of polycomb protein |
| PF09734 | 1 | Tau95 | RNA polymerase III transcription factor (TF)IIIC subunit HTH domain |
| PF09736 | 1 | Bud13 | Pre-mRNA-splicing factor of RES complex |
| PF09742 | 1 | Dymeclin | Dyggve-Melchior-Clausen syndrome protein |
| PF09745 | 1 | NSRP1_N | Nuclear speckle splicing regulatory protein 1, N-terminal |
| PF09747 | 1 | CCD97-like_C | Coiled-coil domain containing protein 97-like, C-terminal |
| PF09748 | 1 | Med10 | Transcription factor subunit Med10 of Mediator complex |
| PF09749 | 1 | HVSL | Uncharacterised conserved protein |
| PF09751 | 1 | Es2 | Nuclear protein Es2 |
| PF09757 | 1 | Arb2 | Arb2 domain |
| PF09759 | 1 | Atx10homo_assoc | Spinocerebellar ataxia type 10 protein domain |
| PF09763 | 2 | Sec3_C | Exocyst complex component Sec3 |
| PF09766 | 1 | FmiP_Thoc5 | Fms-interacting protein/Thoc5 |
| PF09768 | 1 | Peptidase_M76 | Peptidase M76 family |
| PF09769 | 1 | ApoO | Apolipoprotein O |
| PF09770 | 1 | PAT1 | Topoisomerase II-associated protein PAT1 |
| PF09774 | 1 | MIX23 | Intermembrane space protein MIX23 |
| PF09779 | 1 | Ima1_N | Ima1 N-terminal domain |
| PF09783 | 1 | Vac_ImportDeg | Vacuolar import and degradation protein |
| PF09784 | 1 | L31 | Mitochondrial ribosomal protein L31 |
| PF09785 | 1 | Prp31_C | Prp31 C terminal domain |
| PF09791 | 1 | Oxidored-like | Oxidoreductase-like protein, N-terminal |
| PF09794 | 1 | Avl9 | Transport protein Avl9 |
| PF09796 | 1 | QCR10 | Ubiquinol-cytochrome-c reductase complex subunit (QCR10) |
| PF09797 | 1 | NatB_MDM20 | N-acetyltransferase B complex (NatB) non catalytic subunit |
| PF09801 | 1 | SYS1 | Integral membrane protein S linking to the trans Golgi network |
| PF09802 | 1 | Sec66 | Preprotein translocase subunit Sec66 |
| PF09804 | 1 | DENND11 | DENN domain-containing protein 11 |
| PF09805 | 1 | Nop25 | Nucleolar protein 12 (25kDa) |
| PF09807 | 1 | ELP6 | Elongation complex protein 6 |
| PF09809 | 1 | MRP-L27 | Mitochondrial ribosomal protein L27 |
| PF09810 | 1 | Exo5 | Exonuclease V - a 5' deoxyribonuclease |
| PF09811 | 2 | Yae1_N | Essential protein Yae1, N terminal |
| PF09813 | 1 | Coa3_cc | Cytochrome c oxidase assembly factor 3 |
| PF09814 | 1 | HECT_2 | HECT-like Ubiquitin-conjugating enzyme (E2)-binding |
| PF09816 | 1 | EAF | RNA polymerase II transcription elongation factor |
| PF09818 | 1 | ABC_ATPase | ATPase of the ABC class |
| PF09825 | 1 | BPL_N | Biotin-protein ligase, N terminal |
| PF09830 | 2 | ATP_transf | ATP adenylyltransferase C-terminal domain |
| PF09848 | 2 | DUF2075 | Schlafen group 3, DNA/RNA helicase domain |
| PF09924 | 2 | LPG_synthase_C | Phosphatidylglycerol lysyltransferase, C-terminal |
| PF09949 | 3 | APP1_cat | Phosphatidate phosphatase APP1, catalytic domain |
| PF09962 | 1 | DUF2196 | Uncharacterized conserved protein (DUF2196) |
| PF09994 | 4 | DUF2235 | Uncharacterized alpha/beta hydrolase domain (DUF2235) |
| PF09995 | 2 | MPAB_Lcp_cat | ER-bound oxygenase mpaB/B'/Rubber oxygenase, catalytic domain |
| PF10000 | 2 | ACT_3 | ACT domain |
| PF10014 | 1 | 2OG-Fe_Oxy_2 | 2OG-Fe dioxygenase |
| PF10017 | 3 | Methyltransf_33 | Histidine-specific methyltransferase, SAM-dependent |
| PF10018 | 1 | Med4 | Vitamin-D-receptor interacting Mediator subunit 4 |
| PF10021 | 3 | DUF2263 | Uncharacterized protein conserved in bacteria (DUF2263) |
| PF10022 | 2 | DUF2264 | Uncharacterized protein conserved in bacteria (DUF2264) |
| PF10032 | 1 | Pho88 | Phosphate transport (Pho88) |
| PF10033 | 1 | ATG13 | Autophagy-related protein 13 |
| PF10056 | 2 | DUF2293 | Uncharacterized conserved protein (DUF2293) |
| PF10058 | 1 | zinc_ribbon_10 | Predicted integral membrane zinc-ribbon metal-binding protein |
| PF10067 | 2 | DUF2306 | Predicted membrane protein (DUF2306) |
| PF10075 | 2 | CSN8_PSD8_EIF3K | CSN8/PSMD8/EIF3K family |
| PF10104 | 1 | Brr6_like_C_C | Di-sulfide bridge nucleocytoplasmic transport domain |
| PF10108 | 1 | DNA_pol_B_exo2 | Predicted 3'-5' exonuclease related to the exonuclease domain of PolB |
| PF10153 | 1 | Efg1 | rRNA-processing protein Efg1 |
| PF10156 | 1 | Med17 | Subunit 17 of Mediator complex |
| PF10159 | 1 | MMtag | Multiple myeloma tumor-associated |
| PF10165 | 1 | Ric8 | Guanine nucleotide exchange factor synembryn |
| PF10173 | 1 | Mit_KHE1 | Mitochondrial K+-H+ exchange-related |
| PF10176 | 1 | DUF2370 | Protein of unknown function (DUF2370) |
| PF10180 | 1 | WKF | WKF domain |
| PF10181 | 1 | PIG-H | GPI-GlcNAc transferase complex, PIG-H component |
| PF10186 | 2 | ATG14 | Vacuolar sorting 38 and autophagy-related subunit 14 |
| PF10187 | 1 | FAM192A_Fyv6_N | FAM192A/Fyv6, N-terminal domain |
| PF10190 | 1 | Tmemb_170 | Putative transmembrane protein 170 |
| PF10193 | 1 | Telomere_reg-2 | Telomere length regulation protein |
| PF10197 | 2 | Cir_N | N-terminal domain of CBF1 interacting co-repressor CIR |
| PF10198 | 1 | Ada3 | Histone acetyltransferases subunit 3 |
| PF10199 | 1 | Adaptin_binding | Alpha and gamma adaptin binding protein p34 |
| PF10213 | 1 | MRP-S28 | Mitochondrial ribosomal subunit protein |
| PF10214 | 1 | Rrn6 | RNA polymerase I-specific transcription-initiation factor |
| PF10215 | 1 | Ost4 | Oligosaccaryltransferase |
| PF10224 | 1 | DUF2205 | Short coiled-coil protein |
| PF10230 | 1 | LIDHydrolase | Lipid-droplet associated hydrolase |
| PF10232 | 1 | Med8 | Mediator of RNA polymerase II transcription complex subunit 8 |
| PF10233 | 1 | Cg6151-P | Uncharacterized conserved protein CG6151-P |
| PF10236 | 1 | DAP3 | Mitochondrial ribosomal death-associated protein 3 |
| PF10237 | 1 | N6-adenineMlase | Probable N6-adenine methyltransferase |
| PF10241 | 1 | KxDL | Uncharacterized conserved protein |
| PF10247 | 1 | Romo1 | Reactive mitochondrial oxygen species modulator 1 |
| PF10252 | 1 | PP28 | Casein kinase substrate phosphoprotein PP28 |
| PF10253 | 1 | PRCC | Mitotic checkpoint regulator, MAD2B-interacting |
| PF10255 | 1 | Paf67 | RNA polymerase I-associated factor PAF67 |
| PF10256 | 1 | Erf4 | Golgin subfamily A member 7/ERF4 family |
| PF10257 | 1 | RAI16-like | Retinoic acid induced 16-like protein |
| PF10259 | 1 | Rogdi_lz | Rogdi leucine zipper containing protein |
| PF10261 | 1 | Scs3p | Inositol phospholipid synthesis and fat-storage-inducing TM |
| PF10262 | 1 | Rdx | Rdx family |
| PF10263 | 2 | SprT-like | SprT-like family |
| PF10270 | 1 | MMgT | Membrane magnesium transporter |
| PF10273 | 1 | WGG | Pre-rRNA-processing protein TSR2 |
| PF10274 | 1 | ParcG | Parkin co-regulated protein |
| PF10275 | 1 | Peptidase_C65 | Peptidase C65 Otubain |
| PF10276 | 1 | zf-CHCC | Zinc-finger domain |
| PF10277 | 2 | Frag1 | Frag1/DRAM/Sfk1 family |
| PF10280 | 1 | Med11 | Mediator complex protein |
| PF10281 | 6 | Ish1 | Putative nuclear envelope organisation protein |
| PF10282 | 2 | Lactonase | Lactonase, 7-bladed beta-propeller |
| PF10287 | 2 | YJL171C_Tos1_C | Cell wall protein YJL171C/Tos1, C-terminal |
| PF10288 | 1 | CTU2 | Cytoplasmic tRNA 2-thiolation protein 2 |
| PF10290 | 1 | YJL171C_Tos1_N | Cell wall protein YJL171C/Tos1, N-terminal |
| PF10291 | 1 | muHD | Muniscin C-terminal mu homology domain |
| PF10293 | 1 | DUF2405 | Domain of unknown function (DUF2405) |
| PF10294 | 8 | Methyltransf_16 | Lysine methyltransferase |
| PF10295 | 1 | DUF2406 | Uncharacterised protein (DUF2406) |
| PF10296 | 2 | MMM1 | Maintenance of mitochondrial morphology protein 1 |
| PF10297 | 1 | Hap4_Hap_bind | Minimal binding motif of Hap4 for binding to Hap2/3/5 |
| PF10300 | 1 | Iml2-TPR_39 | Iml2/Tetratricopeptide repeat protein 39 |
| PF10302 | 1 | Dsc3_N | DSC E3 ubiquitin ligase complex subunit 3, ubiquitin-like domain |
| PF10303 | 1 | DUF2408 | Protein of unknown function (DUF2408) |
| PF10304 | 1 | RTP1_C2 | Required for nuclear transport of RNA pol II C-terminus 2 |
| PF10305 | 1 | Fmp27_SW | RNA pol II promoter Fmp27 protein domain |
| PF10306 | 1 | FLILHELTA | Hypothetical protein FLILHELTA |
| PF10307 | 1 | HAD_SAK_1 | HAD domain family 1 in Swiss Army Knife RNA repair proteins |
| PF10309 | 1 | NCBP3 | Nuclear cap-binding protein subunit 3 |
| PF10310 | 1 | DUF5427 | Family of unknown function (DUF5427) |
| PF10311 | 1 | Ilm1 | Increased loss of mitochondrial DNA protein 1 |
| PF10312 | 1 | Cactin_mid | Conserved mid region of cactin |
| PF10313 | 1 | DUF2415 | Uncharacterised protein domain (DUF2415) |
| PF10329 | 1 | DUF2417 | Region of unknown function (DUF2417) |
| PF10330 | 1 | Stb3 | Putative Sin3 binding protein |
| PF10332 | 1 | DUF2418 | Protein of unknown function (DUF2418) |
| PF10334 | 1 | ArAE_2 | Aromatic acid exporter family member 2 |
| PF10336 | 1 | DUF2420 | Protein of unknown function (DUF2420) |
| PF10337 | 5 | ArAE_2_N | Putative ER transporter, 6TM, N-terminal |
| PF10338 | 1 | DUF2423 | Protein of unknown function (DUF2423) |
| PF10340 | 5 | Say1_Mug180 | Steryl acetyl hydrolase |
| PF10342 | 1 | Kre9_KNH | Kre9/KNH-like N-terminal Ig-like domain |
| PF10343 | 1 | Q_salvage | Potential Queuosine, Q, salvage protein family |
| PF10344 | 1 | Fmp27 | Mitochondrial protein from FMP27 |
| PF10345 | 1 | Cohesin_load | Cohesin loading factor |
| PF10346 | 2 | Con-6 | Conidiation protein 6 |
| PF10347 | 1 | Fmp27_GFWDK | RNA pol II promoter Fmp27 protein domain |
| PF10348 | 3 | DUF2427 | Domain of unknown function (DUF2427) |
| PF10350 | 1 | DUF2428 | THADA/TRM732, DUF2428 |
| PF10351 | 1 | Apt1 | Golgi-body localisation protein domain |
| PF10354 | 1 | BMT5-like | rRNA (uridine-N3-)-methyltransferase BTM5-like |
| PF10355 | 2 | Ytp1 | Protein of unknown function (Ytp1) |
| PF10356 | 1 | DUF2034 | Protein of unknown function (DUF2034) |
| PF10357 | 1 | Kin17_mid | Domain of Kin17 curved DNA-binding protein |
| PF10358 | 1 | NT-C2 | N-terminal C2 in EEIG1 and EHBP1 proteins |
| PF10359 | 1 | Fmp27_WPPW | RNA pol II promoter Fmp27 protein domain |
| PF10360 | 1 | DUF2433 | Protein of unknown function (DUF2433) |
| PF10363 | 1 | RTP1_C1 | Required for nuclear transport of RNA pol II C-terminus 1 |
| PF10366 | 1 | Vps39_1 | Vacuolar sorting protein 39 domain 1 |
| PF10367 | 2 | Vps39_2 | Vacuolar sorting protein 39 domain 2 |
| PF10369 | 1 | ALS_ss_C | Small subunit of acetolactate synthase |
| PF10370 | 1 | DUF2437 | Domain of unknown function (DUF2437) |
| PF10373 | 6 | EST1_DNA_bind | Est1 DNA/RNA binding domain |
| PF10374 | 1 | EST1 | Telomerase activating protein Est1 |
| PF10375 | 1 | GRAB | GRAB domain |
| PF10377 | 1 | ATG11 | Autophagy-related protein 11 |
| PF10378 | 1 | RRM | Putative RRM domain |
| PF10382 | 1 | DUF2439 | Protein of unknown function (DUF2439) |
| PF10383 | 3 | Clr2 | Transcription-silencing protein Clr2 |
| PF10384 | 1 | Scm3 | Centromere protein Scm3 |
| PF10391 | 2 | DNA_pol_lambd_f | Fingers domain of DNA polymerase lambda |
| PF10392 | 1 | COG5 | Golgi transport complex subunit 5 |
| PF10394 | 1 | Hat1_N | Histone acetyl transferase HAT1 N-terminus |
| PF10395 | 1 | Utp8 | Utp8 family |
| PF10396 | 1 | TrmE_N | GTP-binding protein TrmE N-terminus |
| PF10397 | 1 | ADSL_C | Adenylosuccinate lyase C-terminus |
| PF10403 | 2 | BHD_1 | Rad4 beta-hairpin domain 1 |
| PF10404 | 2 | BHD_2 | Rad4 beta-hairpin domain 2 |
| PF10405 | 2 | BHD_3 | Rad4 beta-hairpin domain 3 |
| PF10406 | 1 | TAF8_C | Transcription factor TFIID complex subunit 8 C-term |
| PF10408 | 1 | Ufd2P_core | Ubiquitin elongating factor core |
| PF10415 | 1 | FumaraseC_C | Fumarase C C-terminus |
| PF10417 | 1 | 1-cysPrx_C | C-terminal domain of 1-Cys peroxiredoxin |
| PF10419 | 1 | TFIIIC_sub6 | TFIIIC subunit triple barrel domain |
| PF10428 | 2 | SOG2 | RAM signalling pathway protein |
| PF10431 | 3 | ClpB_D2-small | C-terminal, D2-small domain, of ClpB protein |
| PF10433 | 4 | MMS1_N | Mono-functional DNA-alkylating methyl methanesulfonate N-term |
| PF10435 | 1 | BetaGal_dom2 | Beta-galactosidase, domain 2 |
| PF10436 | 3 | BCDHK_Adom3 | Mitochondrial branched-chain alpha-ketoacid dehydrogenase kinase |
| PF10441 | 1 | Urb2 | Urb2/Npa2 family |
| PF10443 | 1 | RNA12 | RNA12 protein |
| PF10444 | 1 | Nbl1_Borealin_N | Nbl1 / Borealin N terminal |
| PF10445 | 1 | DUF2456 | Protein of unknown function (DUF2456) |
| PF10446 | 1 | DUF2457 | Protein of unknown function (DUF2457) |
| PF10447 | 1 | EXOSC1 | Exosome component EXOSC1/CSL4 |
| PF10453 | 1 | NUFIP1 | Nuclear fragile X mental retardation-interacting protein 1 (NUFIP1) |
| PF10455 | 1 | BAR_2 | Bin/amphiphysin/Rvs domain for vesicular trafficking |
| PF10458 | 1 | Val_tRNA-synt_C | Valyl tRNA synthetase tRNA binding arm |
| PF10469 | 1 | AKAP7_NLS | AKAP7 2'5' RNA ligase-like domain |
| PF10471 | 1 | ANAPC_CDC26 | Anaphase-promoting complex APC subunit CDC26 |
| PF10475 | 1 | Vps54_N | Vacuolar-sorting protein 54, of GARP complex |
| PF10483 | 1 | Elong_Iki1 | Elongator subunit Iki1 |
| PF10487 | 2 | Nup188 | Nucleoporin subcomplex protein binding to Pom34 |
| PF10494 | 1 | Stk19 | Serine-threonine protein kinase 19 |
| PF10496 | 1 | Syntaxin-18_N | SNARE-complex protein Syntaxin-18 N-terminus |
| PF10497 | 1 | zf-4CXXC_R1 | Zinc-finger domain of monoamine-oxidase A repressor R1 |
| PF10501 | 1 | Ribosomal_L50 | Ribosomal subunit 39S |
| PF10502 | 3 | Peptidase_S26 | Signal peptidase, peptidase S26 |
| PF10503 | 2 | Esterase_PHB | Esterase PHB depolymerase |
| PF10509 | 1 | GalKase_gal_bdg | Galactokinase galactose-binding signature |
| PF10510 | 1 | PIG-S | Phosphatidylinositol-glycan biosynthesis class S protein |
| PF10513 | 2 | EPL1 | Enhancer of polycomb-like |
| PF10516 | 1 | SHNi-TPR | SHNi-TPR |
| PF10521 | 1 | Tti2 | Tti2 family |
| PF10528 | 3 | GLEYA | GLEYA domain |
| PF10531 | 1 | SLBB | SLBB domain |
| PF10537 | 1 | WAC_Acf1_DNA_bd | ATP-utilising chromatin assembly and remodelling N-terminal |
| PF10544 | 3 | T5orf172 | T5orf172 domain |
| PF10551 | 10 | MULE | MULE transposase domain |
| PF10557 | 3 | Cullin_Nedd8 | Cullin protein neddylation domain |
| PF10558 | 1 | MTP18 | Mitochondrial 18 KDa protein (MTP18) |
| PF10559 | 1 | Plug_translocon | Plug domain of Sec61p |
| PF10568 | 2 | Tom37 | Outer mitochondrial membrane transport complex protein |
| PF10584 | 5 | Proteasome_A_N | Proteasome subunit A N-terminal signature |
| PF10585 | 2 | UBA_E1_SCCH | Ubiquitin-activating enzyme, SCCH domain |
| PF10587 | 1 | EF-1_beta_acid | Eukaryotic elongation factor 1 beta central acidic region |
| PF10588 | 1 | NADH-G_4Fe-4S_3 | NADH-ubiquinone oxidoreductase-G iron-sulfur binding region |
| PF10589 | 1 | NADH_4Fe-4S | NADH-ubiquinone oxidoreductase-F iron-sulfur binding region |
| PF10590 | 2 | PNP_phzG_C | Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region |
| PF10596 | 1 | U6-snRNA_bdg | U6-snRNA interacting domain of PrP8 |
| PF10597 | 1 | U5_2-snRNA_bdg | U5-snRNA binding site 2 of PrP8 |
| PF10598 | 1 | RRM_4 | RNA recognition motif of the spliceosomal PrP8 |
| PF10601 | 1 | zf-LITAF-like | LITAF-like zinc ribbon domain |
| PF10602 | 2 | RPN7 | 26S proteasome subunit RPN7 |
| PF10604 | 1 | Polyketide_cyc2 | Polyketide cyclase / dehydrase and lipid transport |
| PF10607 | 4 | CTLH | CTLH/CRA C-terminal to LisH motif domain |
| PF10609 | 3 | ParA | NUBPL iron-transfer P-loop NTPase |
| PF10615 | 1 | DUF2470 | Domain of unknown function (DUF2470) |
| PF10637 | 1 | Ofd1_CTDD | Oxoglutarate and iron-dependent oxygenase degradation C-term |
| PF10639 | 2 | TMEM234 | Putative transmembrane family 234 |
| PF10642 | 1 | Tom5 | Mitochondrial import receptor subunit or translocase |
| PF10644 | 2 | Misat_Tub_SegII | Misato Segment II tubulin-like domain |
| PF10680 | 1 | RRN9 | RNA polymerase I specific transcription initiation factor |
| PF10744 | 1 | Med1 | Mediator of RNA polymerase II transcription subunit 1 |
| PF10775 | 1 | ATP_sub_h | ATP synthase complex subunit h |
| PF10780 | 1 | MRP_L53 | 39S ribosomal protein L53/MRP-L53 |
| PF10785 | 1 | NADH-u_ox-rdase | NADH-ubiquinone oxidoreductase complex I, 21 kDa subunit |
| PF10791 | 1 | F1F0-ATPsyn_F | Mitochondrial F1-F0 ATP synthase subunit F of fungi |
| PF10906 | 1 | Mrx7 | MIOREX complex component 7 |
| PF10996 | 2 | Beta-Casp | Beta-Casp domain |
| PF10998 | 1 | DUF2838 | Protein of unknown function (DUF2838) |
| PF11001 | 1 | DUF2841 | Protein of unknown function (DUF2841) |
| PF11017 | 1 | DUF2855 | Protein of unknown function (DUF2855) |
| PF11022 | 1 | ATP19 | ATP synthase subunit K |
| PF11034 | 2 | Grg1 | Glucose-repressible protein Grg1 |
| PF11051 | 2 | Mannosyl_trans3 | Mannosyltransferase putative |
| PF11160 | 1 | Hva1_TUDOR | Hypervirulence associated proteins TUDOR domain |
| PF11175 | 3 | DUF2961 | Protein of unknown function (DUF2961) |
| PF11176 | 1 | Tma16 | Translation machinery-associated protein 16 |
| PF11204 | 2 | DUF2985 | Protein of unknown function (DUF2985) |
| PF11221 | 1 | Med21 | Subunit 21 of Mediator complex |
| PF11262 | 1 | Tho2 | Transcription factor/nuclear export subunit protein 2 |
| PF11274 | 2 | DUF3074 | Protein of unknown function (DUF3074) |
| PF11309 | 1 | DUF3112 | Protein of unknown function (DUF3112) |
| PF11312 | 1 | Methyltransf_34 | Putative SAM-dependent methyltransferase |
| PF11326 | 1 | DUF3128 | Protein of unknown function (DUF3128) |
| PF11327 | 5 | Egh16-like | Egh16-like virulence factor |
| PF11338 | 1 | DUF3140 | Protein of unknown function (DUF3140) |
| PF11374 | 4 | DUF3176 | Protein of unknown function (DUF3176) |
| PF11416 | 1 | Syntaxin-5_N | Syntaxin-5 N-terminal, Sly1p-binding domain |
| PF11443 | 1 | DUF2828 | Domain of unknown function (DUF2828) |
| PF11464 | 1 | Rbsn | Rabenosyn Rab binding domain |
| PF11470 | 1 | TUG-UBL1 | TUG ubiquitin-like domain |
| PF11489 | 1 | Aim21 | Altered inheritance of mitochondria protein 21 |
| PF11496 | 2 | HDA2-3 | Class II histone deacetylase complex subunits 2 and 3 |
| PF11500 | 1 | Cut12 | Cut12 conserved domain |
| PF11522 | 1 | Pik1 | Yeast phosphatidylinositol-4-OH kinase Pik1 |
| PF11558 | 4 | HET-s_218-289 | Het-s 218-289 |
| PF11559 | 1 | ADIP | Afadin- and alpha -actinin-Binding |
| PF11563 | 2 | Protoglobin | Protoglobin |
| PF11566 | 1 | PI31_Prot_N | PI31 proteasome regulator N-terminal |
| PF11578 | 2 | DUF3237 | Protein of unknown function (DUF3237) |
| PF11597 | 1 | Med13_N | Mediator complex subunit 13 N-terminal |
| PF11605 | 1 | Vps36_ESCRT-II | Vacuolar protein sorting protein 36 Vps36 |
| PF11626 | 1 | Rap1_C | TRF2-interacting telomeric protein/Rap1 - C terminal domain |
| PF11635 | 1 | Med16 | Mediator complex subunit 16 |
| PF11640 | 1 | TAN | Telomere-length maintenance and DNA damage repair |
| PF11696 | 1 | DUF3292 | Protein of unknown function (DUF3292) |
| PF11698 | 1 | V-ATPase_H_C | V-ATPase subunit H |
| PF11699 | 1 | CENP-C_C | Mif2/CENP-C like |
| PF11700 | 2 | ATG22 | Vacuole effluxer Atg22 like |
| PF11701 | 1 | UNC45-central | Myosin-binding striated muscle assembly central |
| PF11702 | 1 | DUF3295 | Protein of unknown function (DUF3295) |
| PF11704 | 1 | Folliculin | Vesicle coat protein involved in Golgi to plasma membrane transport |
| PF11705 | 1 | RNA_pol_3_Rpc31 | DNA-directed RNA polymerase III subunit Rpc31 |
| PF11707 | 1 | Npa1 | Ribosome 60S biogenesis N-terminal |
| PF11708 | 1 | Slu7 | Pre-mRNA splicing Prp18-interacting factor |
| PF11709 | 1 | Mit_ribos_Mrp51 | Mitochondrial ribosomal protein subunit |
| PF11710 | 4 | Git3 | G protein-coupled glucose receptor regulating Gpa2 |
| PF11711 | 1 | Tim54 | Inner membrane protein import complex subunit Tim54 |
| PF11712 | 1 | Vma12 | Endoplasmic reticulum-based factor for assembly of V-ATPase |
| PF11715 | 2 | Nup160 | Nucleoporin Nup120/160 |
| PF11717 | 2 | Tudor-knot | RNA binding activity-knot of a chromodomain |
| PF11718 | 1 | CPSF73-100_C | Pre-mRNA 3'-end-processing endonuclease polyadenylation factor C-term |
| PF11719 | 1 | Drc1-Sld2 | DNA replication and checkpoint protein |
| PF11720 | 1 | Inhibitor_I78 | Peptidase inhibitor I78 family |
| PF11732 | 1 | Thoc2 | Transcription- and export-related complex subunit |
| PF11735 | 2 | CAP59_mtransfer | Cryptococcal mannosyltransferase 1 |
| PF11744 | 1 | ALMT | Aluminium activated malate transporter |
| PF11754 | 7 | Velvet | Velvet factor |
| PF11764 | 1 | N-SET | COMPASS (Complex proteins associated with Set1p) component N |
| PF11767 | 1 | SET_assoc | Histone lysine methyltransferase SET associated |
| PF11779 | 1 | SPT_ssu-like | Small subunit of serine palmitoyltransferase-like |
| PF11781 | 1 | zf-RRN7 | Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 |
| PF11785 | 1 | Aft1_OSA | Aft1 osmotic stress response (OSM) domain |
| PF11786 | 1 | Aft1_HRA | Aft1 HRA domain |
| PF11787 | 1 | Aft1_HRR | Aft1 HRR domain |
| PF11788 | 1 | MRP-L46 | 39S mitochondrial ribosomal protein L46 |
| PF11789 | 1 | zf-Nse | Zinc-finger of the MIZ type in Nse subunit |
| PF11790 | 7 | Glyco_hydro_cc | Glycosyl hydrolase catalytic core |
| PF11799 | 4 | IMS_C | impB/mucB/samB family C-terminal domain |
| PF11807 | 27 | UstYa | Mycotoxin biosynthesis protein UstYa |
| PF11815 | 3 | DUF3336 | Domain of unknown function (DUF3336) |
| PF11816 | 1 | DUF3337 | Domain of unknown function (DUF3337) |
| PF11817 | 1 | Foie-gras_1 | Foie gras liver health family 1 |
| PF11831 | 1 | Myb_Cef | pre-mRNA splicing factor component |
| PF11838 | 2 | ERAP1_C | ERAP1-like C-terminal domain |
| PF11841 | 1 | ELMO_ARM | ELMO, armadillo-like helical domain |
| PF11861 | 1 | DUF3381 | Domain of unknown function (DUF3381) |
| PF11864 | 1 | DUF3384 | Domain of unknown function (DUF3384) |
| PF11865 | 1 | DUF3385 | Domain of unknown function (DUF3385) |
| PF11882 | 1 | DUF3402 | Domain of unknown function (DUF3402) |
| PF11885 | 6 | DUF3405 | Protein of unknown function (DUF3405) |
| PF11894 | 1 | Nup192 | Nuclear pore complex scaffold, nucleoporins 186/192/205 |
| PF11899 | 1 | DUF3419 | Protein of unknown function (DUF3419) |
| PF11905 | 4 | DUF3425 | Domain of unknown function (DUF3425) |
| PF11911 | 1 | DUF3429 | Protein of unknown function (DUF3429) |
| PF11915 | 8 | DUF3433 | Protein of unknown function (DUF3433) |
| PF11916 | 1 | Vac14_Fig4_bd | Vacuolar protein 14 C-terminal Fig4p binding |
| PF11917 | 13 | DUF3435 | Protein of unknown function (DUF3435) |
| PF11919 | 1 | DUF3437 | Domain of unknown function (DUF3437) |
| PF11923 | 1 | NFACT-C | NFACT protein C-terminal domain |
| PF11927 | 6 | DUF3445 | Protein of unknown function (DUF3445) |
| PF11931 | 1 | SF3a60_Prp9_C | SF3a60/Prp9 C-terminal |
| PF11935 | 1 | SYMPK_PTA1_N | Symplekin/PTA1 N-terminal |
| PF11937 | 2 | DUF3455 | Protein of unknown function (DUF3455) |
| PF11941 | 1 | DUF3459 | Domain of unknown function (DUF3459) |
| PF11942 | 1 | Spt5_N | Spt5 transcription elongation factor, acidic N-terminal |
| PF11951 | 73 | Fungal_trans_2 | Fungal specific transcription factor domain |
| PF11954 | 4 | DUF3471 | Domain of unknown function (DUF3471) |
| PF11957 | 1 | efThoc1 | THO complex subunit 1 transcription elongation factor |
| PF11960 | 1 | DUF3474 | Domain of unknown function (DUF3474) |
| PF11968 | 1 | Bmt2 | 25S rRNA (adenine(2142)-N(1))-methyltransferase, Bmt2 |
| PF11969 | 2 | DcpS_C | Scavenger mRNA decapping enzyme C-term binding |
| PF11970 | 1 | GPR_Gpa2_C | G protein-coupled glucose receptor regulating Gpa2 C-term |
| PF11971 | 1 | CAMSAP_CH | CAMSAP CH domain |
| PF11976 | 10 | Rad60-SLD | Ubiquitin-2 like Rad60 SUMO-like |
| PF11987 | 2 | IF-2 | Translation-initiation factor 2 |
| PF11991 | 1 | Trp_DMAT | Tryptophan dimethylallyltransferase |
| PF12002 | 1 | MgsA_C | MgsA AAA+ ATPase C terminal |
| PF12006 | 1 | DUF3500 | Protein of unknown function (DUF3500) |
| PF12009 | 1 | Telomerase_RBD | Telomerase ribonucleoprotein complex - RNA binding domain |
| PF12013 | 7 | OrsD | Orsellinic acid/F9775 biosynthesis cluster protein D |
| PF12014 | 1 | Cyclin_D1_bind | Cyclin D1 binding domain |
| PF12030 | 1 | DUF3517 | Domain of unknown function (DUF3517) |
| PF12044 | 1 | Metallopep | Putative peptidase family |
| PF12051 | 1 | DUF3533 | Protein of unknown function (DUF3533) |
| PF12054 | 1 | DUF3535 | Domain of unknown function (DUF3535) |
| PF12063 | 1 | DUF3543 | Domain of unknown function (DUF3543) |
| PF12066 | 1 | SERRATE_Ars2_N | SERRATE/Ars2, N-terminal domain |
| PF12074 | 1 | Gcn1_N | Generalcontrol nonderepressible 1 (Gcn1) N-terminal |
| PF12090 | 1 | Spt20 | Spt20 family |
| PF12108 | 1 | SF3a60_bindingd | Splicing factor SF3a60 binding domain |
| PF12110 | 1 | Nup96 | Nuclear protein 96 |
| PF12134 | 1 | PRP8_domainIV | PRP8 domain IV core |
| PF12146 | 34 | Hydrolase_4 | Serine aminopeptidase, S33 |
| PF12152 | 1 | eIF_4G1 | Eukaryotic translation initiation factor 4G1 |
| PF12157 | 1 | DUF3591 | Protein of unknown function (DUF3591) |
| PF12171 | 6 | zf-C2H2_jaz | Zinc-finger double-stranded RNA-binding |
| PF12220 | 1 | U1snRNP70_N | U1 small nuclear ribonucleoprotein of 70kDa MW N terminal |
| PF12222 | 1 | PNGaseA | Peptide N-acetyl-beta-D-glucosaminyl asparaginase amidase A |
| PF12223 | 3 | DUF3602 | Protein of unknown function (DUF3602) |
| PF12224 | 2 | Amidoligase_2 | Putative amidoligase enzyme |
| PF12230 | 1 | PRP21_like_P | Pre-mRNA splicing factor PRP21 like protein |
| PF12231 | 1 | Rif1_N | Rap1-interacting factor 1 N terminal |
| PF12234 | 1 | Rav1p_C | RAVE protein 1 C terminal |
| PF12239 | 2 | DUF3605 | Protein of unknown function (DUF3605) |
| PF12243 | 1 | CTK3 | CTD kinase subunit gamma CTK3 |
| PF12246 | 1 | MKT1_C | Temperature dependent protein affecting M2 dsRNA replication |
| PF12247 | 1 | MKT1_N | Temperature dependent protein affecting M2 dsRNA replication |
| PF12253 | 1 | CAF1A | Chromatin assembly factor 1 subunit A |
| PF12254 | 1 | DNA_pol_alpha_N | DNA polymerase alpha subunit p180 N terminal |
| PF12257 | 1 | IML1 | Vacuolar membrane-associated protein Iml1 |
| PF12265 | 2 | CAF1C_H4-bd | Histone-binding protein RBBP4 or subunit C of CAF1 complex |
| PF12271 | 2 | Chs7 | Chitin synthase export chaperone |
| PF12273 | 2 | RCR | Chitin synthesis regulation, resistance to Congo red |
| PF12294 | 1 | DUF3626 | Protein of unknown function (DUF3626) |
| PF12296 | 5 | HsbA | Hydrophobic surface binding protein A |
| PF12298 | 1 | Bot1p | Eukaryotic mitochondrial regulator protein |
| PF12311 | 7 | DUF3632 | Protein of unknown function (DUF3632) |
| PF12325 | 1 | TMF_TATA_bd | TATA element modulatory factor 1 TATA binding |
| PF12326 | 1 | EOS1 | N-glycosylation protein |
| PF12328 | 1 | Rpp20 | Rpp20 subunit of nuclear RNase MRP and P |
| PF12329 | 1 | TMF_DNA_bd | TATA element modulatory factor 1 DNA binding |
| PF12330 | 1 | Haspin_kinase | Haspin like kinase domain |
| PF12331 | 1 | DUF3636 | Protein of unknown function (DUF3636) |
| PF12333 | 1 | Ipi1_N | Rix1 complex component involved in 60S ribosome maturation |
| PF12340 | 2 | DUF3638 | Protein of unknown function (DUF3638) |
| PF12341 | 1 | Mcl1_mid | Minichromosome loss protein, Mcl1, middle region |
| PF12348 | 2 | CLASP_N | CLASP N terminal |
| PF12349 | 3 | Sterol-sensing | Sterol-sensing domain of SREBP cleavage-activation |
| PF12350 | 1 | CTK3_C | CTD kinase subunit gamma CTK3 C-terminus |
| PF12351 | 3 | Fig1 | Ca2+ regulator and membrane fusion protein Fig1 |
| PF12352 | 3 | V-SNARE_C | Snare region anchored in the vesicle membrane C-terminus |
| PF12353 | 1 | eIF3g | Eukaryotic translation initiation factor 3 subunit G |
| PF12359 | 2 | DUF3645 | Protein of unknown function (DUF3645) |
| PF12396 | 7 | DUF3659 | Protein of unknown function (DUF3659) |
| PF12397 | 1 | U3snoRNP10 | U3 small nucleolar RNA-associated protein 10 |
| PF12400 | 1 | STIMATE | STIMATE family |
| PF12409 | 1 | P5-ATPase | P5-type ATPase cation transporter |
| PF12411 | 1 | Choline_sulf_C | Choline sulfatase enzyme C terminal |
| PF12417 | 6 | DUF3669 | Zinc finger protein |
| PF12423 | 1 | KIF1B | Kinesin protein 1B |
| PF12430 | 1 | ABA_GPCR | Abscisic acid G-protein coupled receptor |
| PF12436 | 1 | USP7_ICP0_bdg | ICP0-binding domain of Ubiquitin-specific protease 7 |
| PF12449 | 1 | DUF3684 | Protein of unknown function (DUF3684) |
| PF12451 | 1 | VPS11_C | Vacuolar protein sorting protein 11 C terminal |
| PF12455 | 1 | Dynactin | Dynein associated protein |
| PF12456 | 1 | hSac2 | Inositol phosphatase |
| PF12457 | 1 | TIP_N | Tuftelin interacting protein N terminal |
| PF12460 | 2 | MMS19_C | RNAPII transcription regulator C-terminal |
| PF12464 | 8 | Mac | Maltose acetyltransferase |
| PF12465 | 1 | Pr_beta_C | Proteasome beta subunits C terminal |
| PF12471 | 2 | GTP_CH_N | GTP cyclohydrolase N terminal |
| PF12473 | 1 | DUF3694 | Kinesin protein |
| PF12481 | 1 | DUF3700 | Aluminium induced protein |
| PF12505 | 4 | DUF3712 | Protein of unknown function (DUF3712) |
| PF12511 | 3 | DUF3716 | Protein of unknown function (DUF3716) |
| PF12513 | 1 | SUV3_C | Mitochondrial degradasome RNA helicase subunit C terminal |
| PF12519 | 2 | MDM10 | Mitochondrial distribution and morphology protein 10 |
| PF12520 | 16 | DUF3723 | Protein of unknown function (DUF3723) |
| PF12537 | 1 | GPHR_N | The Golgi pH Regulator (GPHR) Family N-terminal |
| PF12539 | 1 | Csm1 | Chromosome segregation protein Csm1/Pcs1 |
| PF12542 | 1 | CWC25 | Pre-mRNA splicing factor |
| PF12550 | 1 | GCR1_C | Transcriptional activator of glycolytic enzymes |
| PF12569 | 1 | NatA_aux_su | N-terminal acetyltransferase A, auxiliary subunit |
| PF12572 | 1 | DUF3752 | Protein of unknown function (DUF3752) |
| PF12584 | 1 | TRAPPC10 | Trafficking protein particle complex subunit 10, TRAPPC10 |
| PF12585 | 1 | DUF3759 | Protein of unknown function (DUF3759) |
| PF12588 | 2 | PSDC | Phophatidylserine decarboxylase |
| PF12589 | 1 | WBS_methylT | Methyltransferase involved in Williams-Beuren syndrome |
| PF12597 | 1 | Cox20 | Cytochrome c oxidase assembly protein COX20 |
| PF12612 | 1 | TFCD_C | Tubulin folding cofactor D C terminal |
| PF12619 | 1 | MCM2_N | Mini-chromosome maintenance protein 2 |
| PF12621 | 3 | PHM7_ext | Extracellular tail, of 10TM putative phosphate transporter |
| PF12624 | 1 | Chorein_N | N-terminal region of Chorein or VPS13 |
| PF12627 | 1 | PolyA_pol_RNAbd | Probable RNA and SrmB- binding site of polymerase A |
| PF12631 | 1 | MnmE_helical | MnmE helical domain |
| PF12632 | 1 | Vezatin | Mysoin-binding motif of peroxisomes |
| PF12634 | 1 | Inp1 | Inheritance of peroxisomes protein 1 |
| PF12656 | 3 | G-patch_2 | G-patch domain |
| PF12657 | 1 | TFIIIC_delta | Transcription factor IIIC subunit delta N-term |
| PF12658 | 1 | Ten1 | Telomere capping, CST complex subunit |
| PF12660 | 1 | zf-TFIIIC | Putative zinc-finger of transcription factor IIIC complex |
| PF12678 | 6 | zf-rbx1 | RING-H2 zinc finger domain |
| PF12680 | 4 | SnoaL_2 | SnoaL-like domain |
| PF12688 | 1 | TPR_5 | Tetratrico peptide repeat |
| PF12689 | 1 | Acid_PPase | Acid Phosphatase |
| PF12695 | 1 | Abhydrolase_5 | Alpha/beta hydrolase family |
| PF12697 | 55 | Abhydrolase_6 | Alpha/beta hydrolase family |
| PF12698 | 5 | ABC2_membrane_3 | ABC-2 family transporter protein |
| PF12701 | 1 | LSM14 | Scd6-like Sm domain |
| PF12706 | 7 | Lactamase_B_2 | Beta-lactamase superfamily domain |
| PF12708 | 18 | Pectate_lyase_3 | Pectate lyase superfamily protein |
| PF12709 | 1 | Fungal_TACC | Fungal Transforming acidic coiled-coil (TACC) proteins |
| PF12710 | 4 | HAD | haloacid dehalogenase-like hydrolase |
| PF12716 | 1 | Apq12 | Nuclear pore assembly and biogenesis |
| PF12717 | 4 | Cnd1 | non-SMC mitotic condensation complex subunit 1 |
| PF12718 | 1 | Tropomyosin_1 | Tropomyosin like |
| PF12719 | 1 | Cnd3 | Nuclear condensing complex subunits, C-term domain |
| PF12720 | 1 | DUF3807 | Protein of unknown function (DUF3807) |
| PF12722 | 1 | Hid1 | High-temperature-induced dauer-formation protein |
| PF12726 | 1 | SEN1_N | SEN1 N terminal |
| PF12735 | 1 | Trs65 | TRAPP trafficking subunit Trs65 |
| PF12738 | 7 | PTCB-BRCT | twin BRCT domain |
| PF12739 | 1 | TRAPPC-Trs85 | ER-Golgi trafficking TRAPP I complex 85 kDa subunit |
| PF12745 | 1 | HGTP_anticodon2 | Anticodon binding domain of tRNAs |
| PF12751 | 1 | Vac7 | Vacuolar segregation subunit 7 |
| PF12752 | 2 | SUZ | SUZ domain |
| PF12754 | 1 | Blt1 | Blt1 N-terminal domain |
| PF12755 | 1 | Vac14_Fab1_bd | Vacuolar 14 Fab1-binding region |
| PF12756 | 5 | zf-C2H2_2 | C2H2 type zinc-finger (2 copies) |
| PF12757 | 1 | Eisosome1 | Eisosome protein 1 |
| PF12761 | 1 | End3 | Actin cytoskeleton-regulatory complex protein END3 |
| PF12763 | 9 | EF-hand_4 | Cytoskeletal-regulatory complex EF hand |
| PF12765 | 5 | Cohesin_HEAT | HEAT repeat associated with sister chromatid cohesion |
| PF12766 | 1 | Pyridox_oxase_2 | Pyridoxamine 5'-phosphate oxidase |
| PF12767 | 1 | SAGA-Tad1 | Transcriptional regulator of RNA polII, SAGA, subunit |
| PF12768 | 1 | Rax2 | Cortical protein marker for cell polarity |
| PF12769 | 1 | PNTB_4TM | 4TM region of pyridine nucleotide transhydrogenase, mitoch |
| PF12770 | 9 | CHAT | CHAT domain |
| PF12774 | 1 | AAA_6 | Hydrolytic ATP binding site of dynein motor region |
| PF12775 | 1 | AAA_7 | P-loop containing dynein motor region |
| PF12776 | 1 | Myb_DNA-bind_3 | Myb/SANT-like DNA-binding domain |
| PF12777 | 1 | MT | Microtubule-binding stalk of dynein motor |
| PF12780 | 1 | AAA_8 | P-loop containing dynein motor region D4 |
| PF12781 | 1 | AAA_9 | ATP-binding dynein motor region |
| PF12783 | 3 | Sec7_N | Guanine nucleotide exchange factor in Golgi transport N-terminal |
| PF12796 | 251 | Ank_2 | Ankyrin repeats (3 copies) |
| PF12799 | 3 | LRR_4 | Leucine Rich repeats (2 copies) |
| PF12804 | 2 | NTP_transf_3 | MobA-like NTP transferase domain |
| PF12807 | 1 | eIF3_p135 | Translation initiation factor eIF3 subunit 135 |
| PF12808 | 1 | Mto2_bdg | Micro-tubular organiser Mto1 C-term Mto2-binding region |
| PF12812 | 10 | PDZ_1 | PDZ-like domain |
| PF12813 | 1 | XPG_I_2 | XPG domain containing |
| PF12814 | 3 | Mcp5_PH | Meiotic cell cortex C-terminal pleckstrin homology |
| PF12815 | 2 | CTD | Spt5 C-terminal nonapeptide repeat binding Spt4 |
| PF12816 | 1 | Vps8 | Golgi CORVET complex core vacuolar protein 8 |
| PF12821 | 2 | ThrE_2 | Threonine/Serine exporter, ThrE |
| PF12824 | 1 | MRP-L20 | Mitochondrial ribosomal protein subunit L20 |
| PF12825 | 3 | DUF3818 | Domain of unknown function in PX-proteins (DUF3818) |
| PF12828 | 2 | PXB | PX-associated |
| PF12829 | 1 | Mhr1 | Transcriptional regulation of mitochondrial recombination |
| PF12830 | 4 | Nipped-B_C | Sister chromatid cohesion C-terminus |
| PF12831 | 13 | FAD_oxidored | FAD dependent oxidoreductase |
| PF12838 | 1 | Fer4_7 | 4Fe-4S dicluster domain |
| PF12842 | 1 | DUF3819 | CCR4-Not complex, Not1 subunit, domain of unknown function DUF3819 |
| PF12848 | 3 | ABC_tran_Xtn | ABC transporter |
| PF12850 | 1 | Metallophos_2 | Calcineurin-like phosphoesterase superfamily domain |
| PF12853 | 1 | NADH_u_ox_C | C-terminal of NADH-ubiquinone oxidoreductase 21 kDa subunit |
| PF12854 | 2 | PPR_1 | PPR repeat |
| PF12855 | 2 | Ecl1 | ECL1/2/3 zinc binding proteins |
| PF12859 | 1 | ANAPC1 | Anaphase-promoting complex subunit 1 WD40 beta-propeller domain |
| PF12861 | 5 | zf-ANAPC11 | Anaphase-promoting complex subunit 11 RING-H2 finger |
| PF12862 | 39 | ANAPC5 | Anaphase-promoting complex subunit 5 |
| PF12867 | 1 | DinB_2 | DinB superfamily |
| PF12872 | 2 | OST-HTH | OST-HTH/LOTUS domain |
| PF12874 | 12 | zf-met | Zinc-finger of C2H2 type |
| PF12894 | 38 | ANAPC4_WD40 | Anaphase-promoting complex subunit 4 WD40 domain |
| PF12895 | 2 | ANAPC3 | Anaphase-promoting complex, cyclosome, subunit 3 |
| PF12896 | 1 | ANAPC4 | Anaphase-promoting complex, cyclosome, subunit 4 |
| PF12898 | 1 | Stc1 | Stc1 domain |
| PF12900 | 1 | Pyridox_ox_2 | Pyridoxamine 5'-phosphate oxidase |
| PF12906 | 2 | RINGv | RING-variant domain |
| PF12907 | 1 | zf-met2 | Zinc-binding |
| PF12917 | 1 | YfbR-like | 5'-deoxynucleotidase YfbR-like |
| PF12921 | 1 | ATP13 | Mitochondrial ATPase expression |
| PF12923 | 1 | RRP7 | Ribosomal RNA-processing protein 7 (RRP7) C-terminal domain |
| PF12927 | 1 | DUF3835 | Domain of unknown function (DUF3835) |
| PF12928 | 1 | tRNA_int_end_N2 | tRNA-splicing endonuclease subunit sen54 N-term |
| PF12929 | 1 | Mid1 | Stretch-activated Ca2+-permeable channel component |
| PF12931 | 2 | Sec16_C | Sec23-binding domain of Sec16 |
| PF12932 | 1 | Sec16 | Vesicle coat trafficking protein Sec16 mid-region |
| PF12935 | 1 | Sec16_N | Vesicle coat trafficking protein Sec16 N-terminus |
| PF12936 | 1 | Kri1_C | KRI1-like family C-terminal |
| PF12937 | 24 | F-box-like | F-box-like |
| PF12949 | 1 | HeH | HeH/LEM domain |
| PF12955 | 1 | DUF3844 | Domain of unknown function (DUF3844) |
| PF12971 | 1 | NAGLU_N | Alpha-N-acetylglucosaminidase (NAGLU) N-terminal domain |
| PF12972 | 1 | NAGLU_C | Alpha-N-acetylglucosaminidase (NAGLU) C-terminal domain |
| PF12998 | 2 | ING | Inhibitor of growth proteins N-terminal histone-binding |
| PF12999 | 2 | PRKCSH-like | Glucosidase II beta subunit-like |
| PF13000 | 3 | Acatn | Acetyl-coenzyme A transporter 1 |
| PF13001 | 1 | Ecm29 | Proteasome stabiliser |
| PF13002 | 1 | LDB19 | Arrestin_N terminal like |
| PF13012 | 4 | MitMem_reg | Maintenance of mitochondrial structure and function |
| PF13015 | 1 | PRKCSH_1 | Glucosidase II beta subunit-like protein |
| PF13019 | 1 | Sde2_N_Ubi | Silencing defective 2 N-terminal ubiquitin domain |
| PF13023 | 2 | HD_3 | HD domain |
| PF13041 | 2 | PPR_2 | PPR repeat family |
| PF13085 | 1 | Fer2_3 | 2Fe-2S iron-sulfur cluster binding domain |
| PF13086 | 11 | AAA_11 | AAA domain |
| PF13087 | 9 | AAA_12 | AAA domain |
| PF13088 | 1 | BNR_2 | BNR repeat-like domain |
| PF13091 | 5 | PLDc_2 | PLD-like domain |
| PF13092 | 1 | CENP-L | Kinetochore complex Sim4 subunit Fta1 |
| PF13093 | 1 | FTA4 | Kinetochore complex Fta4 of Sim4 subunit, or CENP-50 |
| PF13094 | 1 | CENP-Q | CENP-Q, a CENPA-CAD centromere complex subunit |
| PF13098 | 3 | Thioredoxin_2 | Thioredoxin-like domain |
| PF13136 | 1 | DUF3984 | Protein of unknown function (DUF3984) |
| PF13173 | 1 | AAA_14 | AAA domain |
| PF13174 | 3 | TPR_6 | Tetratricopeptide repeat |
| PF13175 | 2 | AAA_15 | AAA ATPase domain |
| PF13176 | 28 | TPR_7 | Tetratricopeptide repeat |
| PF13177 | 4 | DNA_pol3_delta2 | DNA polymerase III, delta subunit |
| PF13181 | 43 | TPR_8 | Tetratricopeptide repeat |
| PF13183 | 1 | Fer4_8 | 4Fe-4S dicluster domain |
| PF13185 | 2 | GAF_2 | GAF domain |
| PF13188 | 1 | PAS_8 | PAS domain |
| PF13191 | 7 | AAA_16 | AAA ATPase domain |
| PF13193 | 16 | AMP-binding_C | AMP-binding enzyme C-terminal domain |
| PF13202 | 18 | EF-hand_5 | EF hand |
| PF13207 | 6 | AAA_17 | AAA domain |
| PF13229 | 4 | Beta_helix | Right handed beta helix region |
| PF13230 | 1 | GATase_4 | Glutamine amidotransferases class-II |
| PF13233 | 4 | Complex1_LYR_2 | Complex1_LYR-like |
| PF13234 | 2 | rRNA_proc-arch | rRNA-processing arch domain |
| PF13236 | 1 | CLU | Clustered mitochondria |
| PF13237 | 1 | Fer4_10 | 4Fe-4S dicluster domain |
| PF13238 | 5 | AAA_18 | AAA domain |
| PF13241 | 2 | NAD_binding_7 | Putative NAD(P)-binding |
| PF13242 | 7 | Hydrolase_like | HAD-hyrolase-like |
| PF13243 | 2 | SQHop_cyclase_C | Squalene-hopene cyclase C-terminal domain |
| PF13245 | 17 | AAA_19 | AAA domain |
| PF13246 | 24 | Cation_ATPase | Cation transport ATPase (P-type) |
| PF13249 | 2 | SQHop_cyclase_N | Squalene-hopene cyclase N-terminal domain |
| PF13254 | 1 | DUF4045 | Domain of unknown function (DUF4045) |
| PF13257 | 1 | DUF4048 | Domain of unknown function (DUF4048) |
| PF13259 | 1 | DUF4050 | Protein of unknown function (DUF4050) |
| PF13279 | 3 | 4HBT_2 | Thioesterase-like superfamily |
| PF13292 | 1 | DXP_synthase_N | 1-deoxy-D-xylulose-5-phosphate synthase |
| PF13298 | 1 | LigD_N | DNA polymerase Ligase (LigD) |
| PF13299 | 1 | CPSF100_C | Cleavage and polyadenylation factor 2 C-terminal |
| PF13300 | 1 | DUF4078 | Domain of unknown function (DUF4078) |
| PF13302 | 22 | Acetyltransf_3 | Acetyltransferase (GNAT) domain |
| PF13304 | 1 | AAA_21 | AAA domain, putative AbiEii toxin, Type IV TA system |
| PF13307 | 2 | Helicase_C_2 | Helicase C-terminal domain |
| PF13323 | 1 | HPIH | N-terminal domain with HPIH motif |
| PF13324 | 1 | GCIP | Grap2 and cyclin-D-interacting |
| PF13329 | 1 | ATG2_CAD | Autophagy-related protein 2 CAD motif |
| PF13339 | 1 | AATF-Che1 | Apoptosis antagonizing transcription factor |
| PF13343 | 1 | SBP_bac_6 | Bacterial extracellular solute-binding protein |
| PF13344 | 3 | Hydrolase_6 | Haloacid dehalogenase-like hydrolase |
| PF13347 | 2 | MFS_2 | MFS/sugar transport protein |
| PF13349 | 1 | DUF4097 | Putative adhesin |
| PF13350 | 4 | Y_phosphatase3 | Tyrosine phosphatase family |
| PF13353 | 1 | Fer4_12 | 4Fe-4S single cluster domain |
| PF13358 | 11 | DDE_3 | DDE superfamily endonuclease |
| PF13360 | 3 | PQQ_2 | PQQ-like domain |
| PF13361 | 1 | UvrD_C | UvrD-like helicase C-terminal domain |
| PF13363 | 1 | BetaGal_dom3 | Beta-galactosidase, domain 3 |
| PF13364 | 3 | BetaGal_dom4_5 | Beta-galactosidase jelly roll domain |
| PF13365 | 6 | Trypsin_2 | Trypsin-like peptidase domain |
| PF13369 | 1 | Transglut_core2 | Transglutaminase-like superfamily |
| PF13373 | 1 | Dsc3_C | DSC E3 ubiquitin ligase complex subunit 3, C-terminal domain |
| PF13374 | 206 | TPR_10 | Tetratricopeptide repeat |
| PF13376 | 2 | OmdA | Bacteriocin-protection, YdeI or OmpD-Associated |
| PF13378 | 5 | MR_MLE_C | Enolase C-terminal domain-like |
| PF13380 | 1 | CoA_binding_2 | CoA binding domain |
| PF13384 | 1 | HTH_23 | Homeodomain-like domain |
| PF13385 | 1 | Laminin_G_3 | Concanavalin A-like lectin/glucanases superfamily |
| PF13393 | 2 | tRNA-synt_His | Histidyl-tRNA synthetase |
| PF13394 | 1 | Fer4_14 | 4Fe-4S single cluster domain |
| PF13398 | 1 | Peptidase_M50B | Peptidase M50B-like |
| PF13401 | 7 | AAA_22 | AAA domain |
| PF13402 | 1 | Peptidase_M60 | Peptidase M60, enhancin and enhancin-like |
| PF13405 | 6 | EF-hand_6 | EF-hand domain |
| PF13409 | 17 | GST_N_2 | Glutathione S-transferase, N-terminal domain |
| PF13410 | 9 | GST_C_2 | Glutathione S-transferase, C-terminal domain |
| PF13414 | 6 | TPR_11 | TPR repeat |
| PF13415 | 13 | Kelch_3 | Galactose oxidase, central domain |
| PF13417 | 18 | GST_N_3 | Glutathione S-transferase, N-terminal domain |
| PF13418 | 14 | Kelch_4 | Galactose oxidase, central domain |
| PF13419 | 10 | HAD_2 | Haloacid dehalogenase-like hydrolase |
| PF13420 | 3 | Acetyltransf_4 | Acetyltransferase (GNAT) domain |
| PF13422 | 1 | DUF4110 | Domain of unknown function (DUF4110) |
| PF13423 | 10 | UCH_1 | Ubiquitin carboxyl-terminal hydrolase |
| PF13424 | 90 | TPR_12 | Tetratricopeptide repeat |
| PF13426 | 15 | PAS_9 | PAS domain |
| PF13428 | 3 | TPR_14 | Tetratricopeptide repeat |
| PF13430 | 2 | DUF4112 | Domain of unknown function (DUF4112) |
| PF13431 | 1 | TPR_17 | Tetratricopeptide repeat |
| PF13432 | 31 | TPR_16 | Tetratricopeptide repeat |
| PF13433 | 1 | Peripla_BP_5 | Periplasmic binding protein domain |
| PF13434 | 18 | Lys_Orn_oxgnase | L-lysine 6-monooxygenase/L-ornithine 5-monooxygenase |
| PF13439 | 3 | Glyco_transf_4 | Glycosyltransferase Family 4 |
| PF13442 | 1 | Cytochrome_CBB3 | Cytochrome C oxidase, cbb3-type, subunit III |
| PF13445 | 22 | zf-RING_UBOX | RING-type zinc-finger |
| PF13446 | 2 | RPT | A repeated domain in UCH-protein |
| PF13450 | 68 | NAD_binding_8 | NAD(P)-binding Rossmann-like domain |
| PF13452 | 2 | MaoC_dehydrat_N | N-terminal half of MaoC dehydratase |
| PF13454 | 2 | NAD_binding_9 | FAD-NAD(P)-binding |
| PF13455 | 3 | MUG113 | Meiotically up-regulated gene 113 |
| PF13456 | 2 | RVT_3 | Reverse transcriptase-like |
| PF13458 | 1 | Peripla_BP_6 | Periplasmic binding protein |
| PF13460 | 49 | NAD_binding_10 | NAD(P)H-binding |
| PF13468 | 1 | Glyoxalase_3 | Glyoxalase-like domain |
| PF13472 | 8 | Lipase_GDSL_2 | GDSL-like Lipase/Acylhydrolase family |
| PF13474 | 1 | SnoaL_3 | SnoaL-like domain |
| PF13476 | 4 | AAA_23 | AAA domain |
| PF13481 | 3 | AAA_25 | AAA domain |
| PF13482 | 1 | RNase_H_2 | RNase_H superfamily |
| PF13483 | 4 | Lactamase_B_3 | Beta-lactamase superfamily domain |
| PF13489 | 84 | Methyltransf_23 | Methyltransferase domain |
| PF13499 | 8 | EF-hand_7 | EF-hand domain pair |
| PF13500 | 1 | AAA_26 | AAA domain |
| PF13506 | 5 | Glyco_transf_21 | Glycosyl transferase family 21 |
| PF13507 | 1 | GATase_5 | CobB/CobQ-like glutamine amidotransferase domain |
| PF13508 | 34 | Acetyltransf_7 | Acetyltransferase (GNAT) domain |
| PF13510 | 1 | Fer2_4 | 2Fe-2S iron-sulfur cluster binding domain |
| PF13513 | 7 | HEAT_EZ | HEAT-like repeat |
| PF13515 | 6 | FUSC_2 | Fusaric acid resistance protein-like |
| PF13516 | 13 | LRR_6 | Leucine Rich repeat |
| PF13518 | 1 | HTH_28 | Helix-turn-helix domain |
| PF13519 | 7 | VWA_2 | von Willebrand factor type A domain |
| PF13520 | 60 | AA_permease_2 | Amino acid permease |
| PF13522 | 4 | GATase_6 | Glutamine amidotransferase domain |
| PF13523 | 3 | Acetyltransf_8 | Acetyltransferase (GNAT) domain |
| PF13524 | 1 | Glyco_trans_1_2 | Glycosyl transferases group 1 |
| PF13527 | 2 | Acetyltransf_9 | Acetyltransferase (GNAT) domain |
| PF13531 | 1 | SBP_bac_11 | Bacterial extracellular solute-binding protein |
| PF13532 | 5 | 2OG-FeII_Oxy_2 | 2OG-Fe(II) oxygenase superfamily |
| PF13533 | 2 | Biotin_lipoyl_2 | Biotin-lipoyl like |
| PF13534 | 1 | Fer4_17 | 4Fe-4S dicluster domain |
| PF13537 | 4 | GATase_7 | Glutamine amidotransferase domain |
| PF13538 | 2 | UvrD_C_2 | UvrD-like helicase C-terminal domain |
| PF13540 | 11 | RCC1_2 | Regulator of chromosome condensation (RCC1) repeat |
| PF13541 | 2 | ChlI | Subunit ChlI of Mg-chelatase |
| PF13549 | 2 | ATP-grasp_5 | ATP-grasp domain |
| PF13551 | 1 | HTH_29 | Winged helix-turn helix |
| PF13561 | 130 | adh_short_C2 | Enoyl-(Acyl carrier protein) reductase |
| PF13563 | 1 | 2_5_RNA_ligase2 | 2'-5' RNA ligase superfamily |
| PF13574 | 1 | Reprolysin_2 | Metallo-peptidase family M12B Reprolysin-like |
| PF13577 | 6 | SnoaL_4 | SnoaL-like domain |
| PF13578 | 7 | Methyltransf_24 | Methyltransferase domain |
| PF13579 | 3 | Glyco_trans_4_4 | Glycosyl transferase 4-like domain |
| PF13582 | 1 | Reprolysin_3 | Metallo-peptidase family M12B Reprolysin-like |
| PF13583 | 2 | Reprolysin_4 | Metallo-peptidase family M12B Reprolysin-like |
| PF13589 | 5 | HATPase_c_3 | Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase |
| PF13592 | 3 | HTH_33 | Winged helix-turn helix |
| PF13593 | 1 | SBF_like | SBF-like CPA transporter family (DUF4137) |
| PF13597 | 1 | NRDD | Anaerobic ribonucleoside-triphosphate reductase |
| PF13598 | 1 | DUF4139 | Domain of unknown function (DUF4139) |
| PF13600 | 1 | DUF4140 | N-terminal domain of unknown function (DUF4140) |
| PF13602 | 33 | ADH_zinc_N_2 | Zinc-binding dehydrogenase |
| PF13603 | 2 | tRNA-synt_1_2 | Leucyl-tRNA synthetase, Domain 2 |
| PF13604 | 16 | AAA_30 | AAA domain |
| PF13606 | 109 | Ank_3 | Ankyrin repeat |
| PF13607 | 2 | Succ_CoA_lig | Succinyl-CoA ligase like flavodoxin domain |
| PF13614 | 1 | AAA_31 | AAA domain |
| PF13616 | 2 | Rotamase_3 | PPIC-type PPIASE domain |
| PF13621 | 5 | Cupin_8 | Cupin-like domain |
| PF13622 | 4 | 4HBT_3 | Thioesterase-like superfamily |
| PF13625 | 1 | Helicase_C_3 | Helicase conserved C-terminal domain |
| PF13632 | 11 | Glyco_trans_2_3 | Glycosyl transferase family group 2 |
| PF13634 | 18 | Nucleoporin_FG | Nucleoporin FG repeat region |
| PF13637 | 201 | Ank_4 | Ankyrin repeats (many copies) |
| PF13638 | 1 | PIN_4 | PIN domain |
| PF13639 | 37 | zf-RING_2 | Ring finger domain |
| PF13640 | 8 | 2OG-FeII_Oxy_3 | 2OG-Fe(II) oxygenase superfamily |
| PF13641 | 7 | Glyco_tranf_2_3 | Glycosyltransferase like family 2 |
| PF13646 | 47 | HEAT_2 | HEAT repeats |
| PF13649 | 84 | Methyltransf_25 | Methyltransferase domain |
| PF13650 | 3 | Asp_protease_2 | Aspartyl protease |
| PF13656 | 2 | RNA_pol_L_2 | RNA polymerase Rpb3/Rpb11 dimerisation domain |
| PF13661 | 1 | 2OG-FeII_Oxy_4 | 2OG-Fe(II) oxygenase superfamily |
| PF13664 | 2 | DUF4149 | Domain of unknown function (DUF4149) |
| PF13668 | 3 | Ferritin_2 | Ferritin-like domain |
| PF13671 | 3 | AAA_33 | AAA domain |
| PF13673 | 35 | Acetyltransf_10 | Acetyltransferase (GNAT) domain |
| PF13679 | 1 | Methyltransf_32 | Methyltransferase domain |
| PF13685 | 3 | Fe-ADH_2 | Iron-containing alcohol dehydrogenase |
| PF13688 | 3 | Reprolysin_5 | Metallo-peptidase family M12 |
| PF13691 | 1 | Lactamase_B_4 | tRNase Z endonuclease |
| PF13692 | 6 | Glyco_trans_1_4 | Glycosyl transferases group 1 |
| PF13695 | 1 | zf-3CxxC | Zinc-binding domain |
| PF13696 | 1 | zf-CCHC_2 | Zinc knuckle |
| PF13710 | 1 | ACT_5 | ACT domain |
| PF13714 | 6 | PEP_mutase | Phosphoenolpyruvate phosphomutase |
| PF13716 | 2 | CRAL_TRIO_2 | Divergent CRAL/TRIO domain |
| PF13718 | 1 | GNAT_acetyltr_2 | GNAT acetyltransferase 2 |
| PF13725 | 1 | tRNA_bind_2 | Possible tRNA binding domain |
| PF13728 | 1 | TraF | F plasmid transfer operon protein |
| PF13738 | 20 | Pyr_redox_3 | Pyridine nucleotide-disulphide oxidoreductase |
| PF13741 | 1 | MRP-S25 | Mitochondrial ribosomal protein S25 |
| PF13757 | 1 | VIT_2 | Vault protein inter-alpha-trypsin domain |
| PF13758 | 1 | Prefoldin_3 | Prefoldin subunit |
| PF13768 | 4 | VWA_3 | von Willebrand factor type A domain |
| PF13771 | 3 | zf-HC5HC2H | PHD-like zinc-binding domain |
| PF13774 | 3 | Longin | Regulated-SNARE-like domain |
| PF13793 | 3 | Pribosyltran_N | N-terminal domain of ribose phosphate pyrophosphokinase |
| PF13802 | 4 | Gal_mutarotas_2 | Galactose mutarotase-like |
| PF13805 | 2 | Pil1 | Eisosome component PIL1 |
| PF13810 | 1 | DUF4185 | Domain of unknown function (DUF4185) |
| PF13812 | 8 | PPR_3 | Pentatricopeptide repeat domain |
| PF13813 | 2 | MBOAT_2 | Membrane bound O-acyl transferase family |
| PF13821 | 2 | DUF4187 | Domain of unknown function (DUF4187) |
| PF13823 | 2 | ADH_N_assoc | Alcohol dehydrogenase GroES-associated |
| PF13824 | 1 | zf-Mss51 | Zinc-finger of mitochondrial splicing suppressor 51 |
| PF13826 | 1 | DUF4188 | Domain of unknown function (DUF4188) |
| PF13831 | 4 | PHD_2 | PHD-finger |
| PF13832 | 3 | zf-HC5HC2H_2 | PHD-zinc-finger like domain |
| PF13833 | 13 | EF-hand_8 | EF-hand domain pair |
| PF13838 | 1 | Clathrin_H_link | Clathrin-H-link |
| PF13840 | 3 | ACT_7 | ACT domain |
| PF13844 | 2 | Glyco_transf_41 | Glycosyl transferase family 41 |
| PF13847 | 48 | Methyltransf_31 | Methyltransferase domain |
| PF13848 | 2 | Thioredoxin_6 | Thioredoxin-like domain |
| PF13850 | 2 | ERGIC_N | Endoplasmic Reticulum-Golgi Intermediate Compartment (ERGIC) |
| PF13854 | 7 | Kelch_5 | Kelch motif |
| PF13855 | 12 | LRR_8 | Leucine rich repeat |
| PF13857 | 68 | Ank_5 | Ankyrin repeats (many copies) |
| PF13859 | 1 | BNR_3 | BNR repeat-like domain |
| PF13862 | 1 | BCCIP | BCCIP |
| PF13867 | 1 | SAP30_Sin3_bdg | Sin3 binding region of histone deacetylase complex subunit SAP30 |
| PF13869 | 1 | NUDIX_2 | Nucleotide hydrolase |
| PF13874 | 1 | Nup54 | Nucleoporin complex subunit 54 |
| PF13875 | 1 | DUF4202 | Domain of unknown function (DUF4202) |
| PF13878 | 1 | zf-C2H2_3 | zinc-finger of acetyl-transferase ESCO |
| PF13881 | 1 | Rad60-SLD_2 | Ubiquitin-2 like Rad60 SUMO-like |
| PF13883 | 1 | Pyrid_oxidase_2 | Pyridoxamine 5'-phosphate oxidase |
| PF13886 | 1 | DUF4203 | Domain of unknown function (DUF4203) |
| PF13889 | 1 | Chromosome_seg | Chromosome segregation during meiosis |
| PF13892 | 1 | DBINO | DNA-binding domain |
| PF13893 | 4 | RRM_5 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) |
| PF13894 | 5 | zf-C2H2_4 | C2H2-type zinc finger |
| PF13899 | 2 | Thioredoxin_7 | Thioredoxin-like |
| PF13902 | 1 | R3H-assoc | R3H-associated N-terminal domain |
| PF13905 | 1 | Thioredoxin_8 | Thioredoxin-like |
| PF13907 | 1 | DUF4208 | Domain of unknown function (DUF4208) |
| PF13911 | 2 | AhpC-TSA_2 | AhpC/TSA antioxidant enzyme |
| PF13912 | 8 | zf-C2H2_6 | C2H2-type zinc finger |
| PF13915 | 1 | DUF4210 | Domain of unknown function (DUF4210) |
| PF13917 | 1 | zf-CCHC_3 | Zinc knuckle |
| PF13919 | 1 | ASXH | Asx homology domain |
| PF13920 | 15 | zf-C3HC4_3 | Zinc finger, C3HC4 type (RING finger) |
| PF13921 | 10 | Myb_DNA-bind_6 | Myb-like DNA-binding domain |
| PF13923 | 29 | zf-C3HC4_2 | Zinc finger, C3HC4 type (RING finger) |
| PF13932 | 1 | GIDA_C | tRNA modifying enzyme MnmG/GidA C-terminal domain |
| PF13933 | 1 | HRXXH | Putative peptidase family |
| PF13934 | 1 | ELYS | Nuclear pore complex assembly |
| PF13945 | 1 | NST1 | Salt tolerance down-regulator |
| PF13949 | 2 | ALIX_LYPXL_bnd | ALIX V-shaped domain binding to HIV |
| PF13959 | 4 | DUF4217 | Domain of unknown function (DUF4217) |
| PF13964 | 3 | Kelch_6 | Kelch motif |
| PF13967 | 4 | RSN1_TM | Late exocytosis, associated with Golgi transport |
| PF13975 | 2 | gag-asp_proteas | gag-polyprotein putative aspartyl protease |
| PF13976 | 4 | gag_pre-integrs | GAG-pre-integrase domain |
| PF14008 | 1 | Metallophos_C | Iron/zinc purple acid phosphatase-like protein C |
| PF14027 | 2 | Questin_oxidase | Questin oxidase-like |
| PF14031 | 1 | D-ser_dehydrat | Putative serine dehydratase domain |
| PF14033 | 3 | DUF4246 | Protein of unknown function (DUF4246) |
| PF14040 | 1 | DNase_NucA_NucB | Deoxyribonuclease NucA/NucB |
| PF14087 | 4 | DUF4267 | Domain of unknown function (DUF4267) |
| PF14099 | 1 | Polysacc_lyase | Polysaccharide lyase |
| PF14124 | 1 | DUF4291 | Domain of unknown function (DUF4291) |
| PF14138 | 1 | COX16 | Cytochrome c oxidase assembly protein COX16 |
| PF14197 | 2 | Cep57_CLD_2 | Centrosome localisation domain of PPC89 |
| PF14200 | 3 | RicinB_lectin_2 | Ricin-type beta-trefoil lectin domain-like |
| PF14204 | 1 | Ribosomal_L18_c | Ribosomal L18 C-terminal region |
| PF14214 | 15 | Helitron_like_N | Helitron helicase-like domain at N-terminus |
| PF14222 | 1 | MOR2-PAG1_N | Cell morphogenesis N-terminal |
| PF14223 | 1 | Retrotran_gag_2 | gag-polypeptide of LTR copia-type |
| PF14225 | 1 | MOR2-PAG1_C | Cell morphogenesis C-terminal |
| PF14226 | 11 | DIOX_N | non-haem dioxygenase in morphine synthesis N-terminal |
| PF14228 | 3 | MOR2-PAG1_mid | Cell morphogenesis central region |
| PF14234 | 1 | DUF4336 | Domain of unknown function (DUF4336) |
| PF14260 | 2 | zf-C4pol | C4-type zinc-finger of DNA polymerase delta |
| PF14269 | 10 | Arylsulfotran_2 | Arylsulfotransferase (ASST) |
| PF14273 | 2 | DUF4360 | Domain of unknown function (DUF4360) |
| PF14288 | 2 | FKS1_dom1 | 1,3-beta-glucan synthase subunit FKS1, domain-1 |
| PF14304 | 1 | CSTF_C | Transcription termination and cleavage factor C-terminal |
| PF14306 | 1 | PUA_2 | PUA-like domain |
| PF14308 | 1 | DnaJ-X | X-domain of DnaJ-containing |
| PF14310 | 6 | Fn3-like | Fibronectin type III-like domain |
| PF14324 | 1 | PINIT | PINIT domain |
| PF14327 | 1 | CSTF2_hinge | Hinge domain of cleavage stimulation factor subunit 2 |
| PF14342 | 1 | DUF4396 | Domain of unknown function (DUF4396) |
| PF14370 | 1 | Topo_C_assoc | C-terminal topoisomerase domain |
| PF14374 | 1 | Ribos_L4_asso_C | 60S ribosomal protein L4 C-terminal domain |
| PF14377 | 5 | UBM | Ubiquitin binding region |
| PF14378 | 1 | PAP2_3 | PAP2 superfamily |
| PF14382 | 2 | ECR1_N | Exosome complex exonuclease RRP4 N-terminal region |
| PF14388 | 1 | DUF4419 | Domain of unknown function (DUF4419) |
| PF14392 | 12 | zf-CCHC_4 | Zinc knuckle |
| PF14413 | 1 | Thg1C | Thg1 C terminal domain |
| PF14420 | 6 | Clr5 | Clr5 domain |
| PF14429 | 1 | DOCK-C2 | C2 domain in Dock180 and Zizimin proteins |
| PF14437 | 3 | MafB19-deam | MafB19-like deaminase |
| PF14441 | 3 | OTT_1508_deam | OTT_1508-like deaminase |
| PF14447 | 2 | Prok-RING_4 | Prokaryotic RING finger family 4 |
| PF14464 | 1 | Prok-JAB | Prokaryotic homologs of the JAB domain |
| PF14474 | 1 | RTC4 | RTC4-like domain |
| PF14475 | 1 | Mso1_Sec1_bdg | Sec1-binding region of Mso1 |
| PF14479 | 12 | HeLo | Prion-inhibition and propagation |
| PF14492 | 5 | EFG_III | Elongation Factor G, domain III |
| PF14497 | 9 | GST_C_3 | Glutathione S-transferase, C-terminal domain |
| PF14498 | 3 | Glyco_hyd_65N_2 | Glycosyl hydrolase family 65, N-terminal domain |
| PF14500 | 1 | MMS19_N | Dos2-interacting transcription regulator of RNA-Pol-II |
| PF14510 | 9 | ABC_trans_N | ABC-transporter N-terminal |
| PF14518 | 2 | Haem_oxygenas_2 | Iron-containing redox enzyme |
| PF14520 | 1 | HHH_5 | Helix-hairpin-helix domain |
| PF14521 | 9 | Aspzincin_M35 | Lysine-specific metallo-endopeptidase |
| PF14523 | 1 | Syntaxin_2 | Syntaxin-like protein |
| PF14529 | 21 | Exo_endo_phos_2 | Endonuclease-reverse transcriptase |
| PF14531 | 11 | Kinase-like | Kinase-like |
| PF14533 | 1 | USP7_C2 | Ubiquitin-specific protease C-terminal |
| PF14534 | 1 | DUF4440 | Domain of unknown function (DUF4440) |
| PF14538 | 1 | Raptor_N | Raptor N-terminal CASPase like domain |
| PF14543 | 16 | TAXi_N | Xylanase inhibitor N-terminal |
| PF14551 | 6 | MCM_N | MCM N-terminal domain |
| PF14555 | 4 | UBA_4 | UBA-like domain |
| PF14558 | 6 | TRP_N | ML-like domain |
| PF14559 | 7 | TPR_19 | Tetratricopeptide repeat |
| PF14560 | 6 | Ubiquitin_2 | Ubiquitin-like domain |
| PF14570 | 1 | zf-RING_4 | RING/Ubox like zinc-binding domain |
| PF14572 | 3 | Pribosyl_synth | Phosphoribosyl synthetase-associated domain |
| PF14580 | 2 | LRR_9 | Leucine-rich repeat |
| PF14587 | 1 | Glyco_hydr_30_2 | O-Glycosyl hydrolase family 30 |
| PF14595 | 1 | Thioredoxin_9 | Thioredoxin |
| PF14598 | 1 | PAS_11 | PAS domain |
| PF14599 | 1 | zinc_ribbon_6 | Zinc-ribbon |
| PF14602 | 13 | Hexapep_2 | Hexapeptide repeat of succinyl-transferase |
| PF14604 | 15 | SH3_9 | Variant SH3 domain |
| PF14608 | 6 | zf-CCCH_2 | RNA-binding, Nab2-type zinc finger |
| PF14609 | 1 | GCP5-Mod21 | gamma-Tubulin ring complex non-core subunit mod21 |
| PF14610 | 1 | Psg1 | Ykl077w/Psg1 (Pma1 Stabilization in Golgi) |
| PF14611 | 1 | SLS | Mitochondrial inner-membrane-bound regulator |
| PF14612 | 2 | Ino80_Iec3 | IEC3 subunit of the Ino80 complex, chromatin re-modelling |
| PF14613 | 1 | DUF4449 | Protein of unknown function (DUF4449) |
| PF14615 | 1 | Rsa3 | Ribosome-assembly protein 3 |
| PF14616 | 1 | Rua1_C | Transcription regulator Rua1, C-terminal |
| PF14617 | 1 | CMS1 | U3-containing 90S pre-ribosomal complex subunit |
| PF14618 | 1 | DUF4452 | Domain of unknown function (DUF4452) |
| PF14619 | 1 | SnAC | Snf2-ATP coupling, chromatin remodelling complex |
| PF14622 | 4 | Ribonucleas_3_3 | Ribonuclease-III-like |
| PF14623 | 1 | Vint | Hint-domain |
| PF14624 | 1 | Vwaint | VWA / Hh protein intein-like |
| PF14629 | 1 | ORC4_C | Origin recognition complex (ORC) subunit 4 C-terminus |
| PF14630 | 1 | ORC5_C | Origin recognition complex (ORC) subunit 5 C-terminus |
| PF14632 | 1 | SPT6_acidic | Acidic N-terminal SPT6 |
| PF14633 | 1 | SH2_2 | SH2 domain |
| PF14634 | 7 | zf-RING_5 | zinc-RING finger domain |
| PF14635 | 1 | HHH_7 | Helix-hairpin-helix motif |
| PF14636 | 1 | FNIP_N | Folliculin-interacting protein N-terminus |
| PF14639 | 1 | YqgF | Holliday-junction resolvase-like of SPT6 |
| PF14641 | 1 | HTH_44 | Helix-turn-helix DNA-binding domain of SPT6 |
| PF14661 | 1 | HAUS6_N | HAUS augmin-like complex subunit 6 N-terminus |
| PF14663 | 1 | RasGEF_N_2 | Rapamycin-insensitive companion of mTOR RasGEF_N domain |
| PF14664 | 1 | RICTOR_N | Rapamycin-insensitive companion of mTOR, N-term |
| PF14666 | 1 | RICTOR_M | Rapamycin-insensitive companion of mTOR, middle domain |
| PF14667 | 1 | Polysacc_synt_C | Polysaccharide biosynthesis C-terminal domain |
| PF14668 | 1 | RICTOR_V | Rapamycin-insensitive companion of mTOR, domain 5 |
| PF14671 | 1 | DSPn | Dual specificity protein phosphatase, N-terminal half |
| PF14681 | 5 | UPRTase | Uracil phosphoribosyltransferase |
| PF14691 | 1 | Fer4_20 | Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster |
| PF14698 | 2 | ASL_C2 | Argininosuccinate lyase C-terminal |
| PF14699 | 1 | hGDE_N | N-terminal domain from the human glycogen debranching enzyme |
| PF14700 | 1 | RPOL_N | DNA-directed RNA polymerase N-terminal |
| PF14701 | 1 | hDGE_amylase | Glycogen debranching enzyme, glucanotransferase domain |
| PF14702 | 1 | hGDE_central | Central domain of human glycogen debranching enzyme |
| PF14703 | 5 | PHM7_cyt | Cytosolic domain of 10TM putative phosphate transporter |
| PF14716 | 2 | HHH_8 | Helix-hairpin-helix domain |
| PF14732 | 1 | UAE_UbL | Ubiquitin/SUMO-activating enzyme ubiquitin-like domain |
| PF14737 | 3 | DUF4470 | Domain of unknown function (DUF4470) |
| PF14748 | 2 | P5CR_dimer | Pyrroline-5-carboxylate reductase dimerisation |
| PF14759 | 1 | Reductase_C | Reductase C-terminal |
| PF14765 | 11 | PS-DH | Polyketide synthase dehydratase |
| PF14773 | 1 | VIGSSK | Helicase-associated putative binding domain, C-terminal |
| PF14791 | 1 | DNA_pol_B_thumb | DNA polymerase beta thumb |
| PF14792 | 2 | DNA_pol_B_palm | DNA polymerase beta palm |
| PF14806 | 1 | Coatomer_b_Cpla | Coatomer beta subunit appendage platform |
| PF14815 | 1 | NUDIX_4 | NUDIX domain |
| PF14821 | 1 | Thr_synth_N | Threonine synthase N terminus |
| PF14823 | 2 | Sirohm_synth_C | Sirohaem biosynthesis protein C-terminal |
| PF14824 | 2 | Sirohm_synth_M | Sirohaem biosynthesis protein central |
| PF14826 | 1 | FACT-Spt16_Nlob | FACT complex subunit SPT16 N-terminal lobe domain |
| PF14831 | 1 | DUF4484 | Domain of unknown function (DUF4484) |
| PF14833 | 7 | NAD_binding_11 | NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase |
| PF14844 | 1 | PH_BEACH | PH domain associated with Beige/BEACH |
| PF14845 | 3 | Glycohydro_20b2 | beta-acetyl hexosaminidase like |
| PF14847 | 1 | Ras_bdg_2 | Ras-binding domain of Byr2 |
| PF14852 | 1 | Fis1_TPR_N | Fis1 N-terminal tetratricopeptide repeat |
| PF14853 | 1 | Fis1_TPR_C | Fis1 C-terminal tetratricopeptide repeat |
| PF14856 | 3 | Hce2 | Pathogen effector; putative necrosis-inducing factor |
| PF14863 | 2 | Alkyl_sulf_dimr | Alkyl sulfatase dimerisation |
| PF14864 | 2 | Alkyl_sulf_C | Alkyl sulfatase C-terminal |
| PF14880 | 1 | COX14 | Cytochrome oxidase c assembly |
| PF14881 | 1 | Tubulin_3 | Tubulin domain |
| PF14938 | 2 | SNAP | Soluble NSF attachment protein, SNAP |
| PF15044 | 1 | CLU_N | Mitochondrial function, CLU-N-term |
| PF15159 | 1 | PIG-Y | Phosphatidylinositol N-acetylglucosaminyltransferase subunit Y |
| PF15227 | 1 | zf-C3HC4_4 | zinc finger of C3HC4-type, RING |
| PF15251 | 1 | DUF4588 | Domain of unknown function (DUF4588) |
| PF15277 | 1 | Sec3-PIP2_bind | Exocyst complex component SEC3 N-terminal PIP2 binding PH |
| PF15341 | 1 | SLX9 | Ribosome biogenesis protein SLX9 |
| PF15365 | 1 | PNRC | Proline-rich nuclear receptor coactivator motif |
| PF15375 | 1 | DUF4602 | Domain of unknown function (DUF4602) |
| PF15377 | 1 | DUF4604 | Domain of unknown function (DUF4604) |
| PF15402 | 6 | MELT_2 | MELT motif |
| PF15405 | 2 | PH_5 | Pleckstrin homology domain |
| PF15406 | 1 | PH_6 | Pleckstrin homology domain |
| PF15409 | 2 | PH_8 | Pleckstrin homology domain |
| PF15410 | 2 | PH_9 | Pleckstrin homology domain |
| PF15411 | 2 | PH_10 | Pleckstrin homology domain |
| PF15412 | 1 | Nse4-Nse3_bdg | Binding domain of Nse4/EID3 to Nse3-MAGE |
| PF15446 | 1 | zf-PHD-like | PHD/FYVE-zinc-finger like domain |
| PF15456 | 2 | Uds1 | Up-regulated During Septation |
| PF15458 | 1 | NTR2 | Nineteen complex-related protein 2 |
| PF15459 | 1 | RRP14 | 60S ribosome biogenesis protein Rrp14 |
| PF15460 | 1 | SAS4 | Something about silencing, SAS, complex subunit 4 |
| PF15463 | 1 | ECM11 | Extracellular mutant protein 11 |
| PF15469 | 1 | Sec5 | Exocyst complex component Sec5 |
| PF15477 | 1 | SMAP | Small acidic protein family |
| PF15508 | 1 | NAAA-beta | beta subunit of N-acylethanolamine-hydrolyzing acid amidase |
| PF15511 | 4 | CENP-T_C | Centromere kinetochore component CENP-T histone fold |
| PF15519 | 1 | RBM39linker | linker between RRM2 and RRM3 domains in RBM39 protein |
| PF15612 | 1 | WHIM1 | WSTF, HB1, Itc1p, MBD9 motif 1 |
| PF15613 | 1 | WSD | Williams-Beuren syndrome DDT (WSD), D-TOX E motif |
| PF15617 | 1 | C-C_Bond_Lyase | C-C_Bond_Lyase of the TIM-Barrel fold |
| PF15624 | 1 | Mif2_N | Kinetochore CENP-C fungal homologue, Mif2, N-terminal |
| PF15630 | 2 | CENP-S | CENP-S protein |
| PF15786 | 1 | PET117 | PET assembly of cytochrome c oxidase, mitochondrial |
| PF15801 | 1 | zf-C6H2 | zf-MYND-like zinc finger, mRNA-binding |
| PF15879 | 1 | MWFE | NADH-ubiquinone oxidoreductase MWFE subunit |
| PF15891 | 1 | Nuc_deoxyri_tr2 | Nucleoside 2-deoxyribosyltransferase like |
| PF15901 | 2 | Sortilin_C | Sortilin, neurotensin receptor 3, C-terminal |
| PF15902 | 2 | Sortilin-Vps10 | Sortilin, neurotensin receptor 3, |
| PF15906 | 1 | zf-NOSIP | Zinc-finger of nitric oxide synthase-interacting protein |
| PF15916 | 1 | DUF4743 | Domain of unknown function (DUF4743) |
| PF15924 | 1 | ALG11_N | ALG11 mannosyltransferase N-terminus |
| PF15932 | 1 | DUF4748 | Domain of unknown function (DUF4748) |
| PF15963 | 1 | Myb_DNA-bind_7 | Myb DNA-binding like |
| PF15979 | 2 | Glyco_hydro_115 | Glycosyl hydrolase family 115 |
| PF15985 | 1 | KH_6 | KH domain |
| PF16004 | 1 | EFTUD2 | 116 kDa U5 small nuclear ribonucleoprotein component N-terminus |
| PF16010 | 4 | CDH-cyt | Cytochrome domain of cellobiose dehydrogenase |
| PF16015 | 1 | Promethin | Promethin |
| PF16016 | 2 | VASt | VAD1 Analog of StAR-related lipid transfer domain |
| PF16035 | 1 | Chalcone_2 | Chalcone isomerase like |
| PF16073 | 6 | SAT | Starter unit:ACP transacylase in aflatoxin biosynthesis |
| PF16076 | 2 | Acyltransf_C | Acyltransferase C-terminus |
| PF16078 | 2 | 2-oxogl_dehyd_N | 2-oxoglutarate dehydrogenase N-terminus |
| PF16093 | 1 | PAC4 | Proteasome assembly chaperone 4 |
| PF16113 | 14 | ECH_2 | Enoyl-CoA hydratase/isomerase |
| PF16114 | 1 | Citrate_bind | ATP citrate lyase citrate-binding |
| PF16121 | 1 | 40S_S4_C | 40S ribosomal protein S4 C-terminus |
| PF16122 | 1 | 40S_SA_C | 40S ribosomal protein SA C-terminus |
| PF16123 | 2 | HAGH_C | Hydroxyacylglutathione hydrolase C-terminus |
| PF16124 | 2 | RecQ_Zn_bind | RecQ zinc-binding |
| PF16131 | 1 | Torus | Torus domain |
| PF16134 | 1 | THOC2_N | THO complex subunit 2 N-terminus |
| PF16155 | 1 | DUF4863 | Domain of unknown function (DUF4863) |
| PF16172 | 1 | DOCK_N | DOCK N-terminus |
| PF16177 | 2 | ACAS_N | Acetyl-coenzyme A synthetase N-terminus |
| PF16183 | 1 | Kinesin_assoc | Kinesin-associated |
| PF16186 | 1 | Arm_3 | Atypical Arm repeat |
| PF16187 | 1 | Peptidase_M16_M | Middle or third domain of peptidase_M16 |
| PF16188 | 1 | Peptidase_M24_C | C-terminal region of peptidase_M24 |
| PF16189 | 1 | Creatinase_N_2 | Creatinase/Prolidase N-terminal domain |
| PF16190 | 1 | E1_FCCH | Ubiquitin-activating enzyme E1 FCCH domain |
| PF16191 | 1 | E1_4HB | Ubiquitin-activating enzyme E1 four-helix bundle |
| PF16192 | 3 | PMT_4TMC | C-terminal four TMM region of protein-O-mannosyltransferase |
| PF16193 | 1 | AAA_assoc_2 | AAA C-terminal domain |
| PF16197 | 10 | KAsynt_C_assoc | Ketoacyl-synthetase C-terminal extension |
| PF16198 | 1 | TruB_C_2 | tRNA pseudouridylate synthase B C-terminal domain |
| PF16199 | 1 | Radical_SAM_C | Radical_SAM C-terminal domain |
| PF16200 | 1 | Band_7_C | C-terminal region of band_7 |
| PF16201 | 1 | NopRA1 | Nucleolar pre-ribosomal-associated protein 1 |
| PF16203 | 1 | ERCC3_RAD25_C | ERCC3/RAD25/XPB C-terminal helicase |
| PF16205 | 1 | Ribosomal_S17_N | Ribosomal_S17 N-terminal |
| PF16206 | 1 | Mon2_C | C-terminal region of Mon2 protein |
| PF16209 | 6 | PhoLip_ATPase_N | Phospholipid-translocating ATPase N-terminal |
| PF16211 | 2 | Histone_H2A_C | C-terminus of histone H2A |
| PF16212 | 6 | PhoLip_ATPase_C | Phospholipid-translocating P-type ATPase C-terminal |
| PF16213 | 2 | DCB | Dimerisation and cyclophilin-binding domain of Mon2 |
| PF16242 | 1 | Pyrid_ox_like | Pyridoxamine 5'-phosphate oxidase like |
| PF16275 | 1 | SF1-HH | Splicing factor 1 helix-hairpin domain |
| PF16278 | 1 | zf-C2HE | C2HE / C2H2 / C2HC zinc-binding finger |
| PF16282 | 1 | SANT_DAMP1_like | SANT/Myb-like domain of DAMP1 |
| PF16300 | 1 | WD40_4 | Type of WD40 repeat |
| PF16320 | 1 | Ribosomal_L12_N | Ribosomal protein L7/L12 dimerisation domain |
| PF16335 | 3 | DUF4965 | Domain of unknown function (DUF4965) |
| PF16350 | 1 | FAO_M | FAD dependent oxidoreductase central domain |
| PF16353 | 2 | LacZ_4 | Beta-galactosidase, domain 4 |
| PF16363 | 17 | GDP_Man_Dehyd | GDP-mannose 4,6 dehydratase |
| PF16367 | 1 | RRM_7 | RNA recognition motif |
| PF16381 | 1 | Coatomer_g_Cpla | Coatomer subunit gamma-1 C-terminal appendage platform |
| PF16399 | 1 | Aquarius_N | Intron-binding protein aquarius N-terminus |
| PF16413 | 1 | Mlh1_C | DNA mismatch repair protein Mlh1 C-terminus |
| PF16414 | 1 | NPC1_N | Niemann-Pick C1 N terminus |
| PF16415 | 1 | CNOT1_CAF1_bind | CCR4-NOT transcription complex subunit 1 CAF1-binding domain |
| PF16417 | 1 | CNOT1_TTP_bind | CCR4-NOT transcription complex subunit 1 TTP binding domain |
| PF16418 | 1 | CNOT1_HEAT | CCR4-NOT transcription complex subunit 1 HEAT repeat |
| PF16420 | 1 | ATG7_N | Ubiquitin-like modifier-activating enzyme ATG7 N-terminus |
| PF16450 | 5 | Prot_ATP_ID_OB | Proteasomal ATPase OB C-terminal domain |
| PF16455 | 1 | UBD | Ubiquitin-binding domain |
| PF16457 | 1 | PH_12 | Pleckstrin homology domain |
| PF16483 | 2 | Glyco_hydro_64 | Beta-1,3-glucanase |
| PF16486 | 4 | ArgoN | N-terminal domain of argonaute |
| PF16488 | 1 | ArgoL2 | Argonaute linker 2 domain |
| PF16491 | 1 | Peptidase_M48_N | CAAX prenyl protease N-terminal, five membrane helices |
| PF16495 | 1 | SWIRM-assoc_1 | SWIRM-associated region 1 |
| PF16499 | 5 | Melibiase_2 | Alpha galactosidase A |
| PF16503 | 1 | zn-ribbon_14 | Zinc-ribbon |
| PF16507 | 1 | BLM10_mid | Proteasome-substrate-size regulator, mid region |
| PF16508 | 1 | NIBRIN_BRCT_II | Second BRCT domain on Nijmegen syndrome breakage protein |
| PF16528 | 1 | Exo84_C | Exocyst component 84 C-terminal |
| PF16541 | 3 | AltA1 | Alternaria alternata allergen 1 |
| PF16543 | 2 | DFRP_C | DRG Family Regulatory Proteins, Tma46 |
| PF16546 | 1 | SGTA_dimer | Homodimerisation domain of SGTA |
| PF16547 | 1 | BLM10_N | Proteasome-substrate-size regulator, N-terminal |
| PF16558 | 2 | AZUL | Amino-terminal Zinc-binding domain of ubiquitin ligase E3A |
| PF16561 | 3 | AMPK1_CBM | Glycogen recognition site of AMP-activated protein kinase |
| PF16573 | 1 | CLP1_N | N-terminal beta-sandwich domain of polyadenylation factor |
| PF16575 | 2 | CLP1_P | mRNA cleavage and polyadenylation factor CLP1 P-loop |
| PF16579 | 1 | AdenylateSensor | Adenylate sensor of SNF1-like protein kinase |
| PF16589 | 2 | BRCT_2 | BRCT domain, a BRCA1 C-terminus domain |
| PF16641 | 1 | CLIP1_ZNF | CLIP1 zinc knuckle |
| PF16643 | 1 | cNMPbd_u2 | Unstructured region on cNMP-binding protein |
| PF16653 | 1 | Sacchrp_dh_C | Saccharopine dehydrogenase C-terminal domain |
| PF16655 | 1 | PhoD_N | PhoD-like phosphatase, N-terminal domain |
| PF16656 | 2 | Pur_ac_phosph_N | Purple acid Phosphatase, N-terminal domain |
| PF16661 | 2 | Lactamase_B_6 | Metallo-beta-lactamase superfamily domain |
| PF16670 | 1 | PI-PLC-C1 | Phosphoinositide phospholipase C, Ca2+-dependent |
| PF16679 | 1 | CDT1_C | DNA replication factor Cdt1 C-terminal domain |
| PF16686 | 1 | POT1PC | ssDNA-binding domain of telomere protection protein |
| PF16714 | 1 | TyrRSs_C | Tyrosyl-tRNA synthetase C-terminal domain |
| PF16717 | 1 | RAC_head | Ribosome-associated complex head domain |
| PF16727 | 1 | REV1_C | DNA repair protein REV1 C-terminal domain |
| PF16746 | 2 | BAR_3 | BAR domain of APPL family |
| PF16752 | 1 | TBCC_N | Tubulin-specific chaperone C N-terminal domain |
| PF16760 | 1 | CBM53 | Starch/carbohydrate-binding module (family 53) |
| PF16770 | 2 | RTT107_BRCT_5 | Regulator of Ty1 transposition protein 107 BRCT domain |
| PF16782 | 1 | SIL1 | Nucleotide exchange factor SIL1 |
| PF16796 | 12 | Microtub_bd | Microtubule binding |
| PF16797 | 1 | Fungal_KA1 | Fungal kinase associated-1 domain |
| PF16803 | 1 | DRE2_N | Fe-S cluster assembly protein DRE2 N-terminus |
| PF16815 | 1 | HRI1 | Protein HRI1 |
| PF16835 | 1 | SF3A2 | Pre-mRNA-splicing factor SF3a complex subunit 2 (Prp11) |
| PF16837 | 1 | SF3A3 | Pre-mRNA-splicing factor SF3A3, of SF3a complex, Prp9 |
| PF16842 | 1 | RRM_occluded | Occluded RNA-recognition motif |
| PF16862 | 6 | Glyco_hydro_79C | Glycosyl hydrolase family 79 C-terminal beta domain |
| PF16863 | 1 | NtCtMGAM_N | N-terminal barrel of NtMGAM and CtMGAM, maltase-glucoamylase |
| PF16866 | 1 | PHD_4 | PHD-finger |
| PF16870 | 2 | OxoGdeHyase_C | 2-oxoglutarate dehydrogenase C-terminal |
| PF16874 | 1 | Glyco_hydro_36C | Glycosyl hydrolase family 36 C-terminal domain |
| PF16875 | 1 | Glyco_hydro_36N | Glycosyl hydrolase family 36 N-terminal domain |
| PF16879 | 1 | Sin3a_C | C-terminal domain of Sin3a protein |
| PF16881 | 1 | LIAS_N | N-terminal domain of lipoyl synthase of Radical_SAM family |
| PF16884 | 3 | ADH_N_2 | N-terminal domain of oxidoreductase |
| PF16886 | 1 | ATP-synt_ab_Xtn | ATPsynthase alpha/beta subunit N-term extension |
| PF16891 | 2 | STPPase_N | Serine-threonine protein phosphatase N-terminal domain |
| PF16892 | 1 | CHS5_N | Chitin biosynthesis protein CHS5 N-terminus |
| PF16893 | 1 | fn3_2 | Fibronectin type III domain |
| PF16897 | 2 | MMR_HSR1_Xtn | C-terminal region of MMR_HSR1 domain |
| PF16898 | 1 | TOPRIM_C | C-terminal associated domain of TOPRIM |
| PF16899 | 1 | Cyclin_C_2 | Cyclin C-terminal domain |
| PF16900 | 1 | REPA_OB_2 | Replication protein A OB domain |
| PF16901 | 2 | DAO_C | C-terminal domain of alpha-glycerophosphate oxidase |
| PF16906 | 1 | Ribosomal_L26 | Ribosomal proteins L26 eukaryotic, L24P archaeal |
| PF16908 | 1 | VPS13 | Vacuolar sorting-associated protein 13, N-terminal |
| PF16909 | 1 | VPS13_C | Vacuolar-sorting-associated 13 protein C-terminal |
| PF16910 | 1 | VPS13_mid_rpt | Repeating coiled region of VPS13 |
| PF16912 | 3 | Glu_dehyd_C | Glucose dehydrogenase C-terminus |
| PF16916 | 2 | ZT_dimer | Dimerisation domain of Zinc Transporter |
| PF16922 | 1 | SLD5_C | DNA replication complex GINS protein SLD5 C-terminus |
| PF16923 | 1 | Glyco_hydro_63N | Glycosyl hydrolase family 63 N-terminal domain |
| PF16944 | 1 | KCH | Fungal potassium channel |
| PF16969 | 1 | SRP68 | RNA-binding signal recognition particle 68 |
| PF16978 | 1 | CRIM | SAPK-interacting protein 1 (Sin1), middle CRIM domain |
| PF16979 | 1 | SIN1_PH | SAPK-interacting protein 1 (Sin1), Pleckstrin-homology |
| PF16983 | 2 | MFS_MOT1 | Molybdate transporter of MFS superfamily |
| PF16988 | 1 | Vps36-NZF-N | Vacuolar protein sorting 36 NZF-N zinc-finger domain |
| PF17004 | 1 | SRP_TPR_like | Putative TPR-like repeat |
| PF17034 | 1 | zinc_ribbon_16 | Zinc-ribbon like family |
| PF17035 | 1 | BET | Bromodomain extra-terminal - transcription regulation |
| PF17042 | 1 | NBD_C | Nucleotide-binding C-terminal domain |
| PF17048 | 3 | Ceramidse_alk_C | Neutral/alkaline non-lysosomal ceramidase, C-terminal |
| PF17050 | 1 | AIM5 | Altered inheritance of mitochondria 5 |
| PF17100 | 8 | NACHT_N | N-terminal domain of NWD NACHT-NTPase |
| PF17104 | 1 | DUF5102 | Domain of unknown function (DUF5102) |
| PF17106 | 4 | NACHT_sigma | Sigma domain on NACHT-NTPases |
| PF17107 | 3 | SesA | N-terminal domain on NACHT_NTPase and P-loop NTPases |
| PF17109 | 2 | Goodbye | fungal STAND N-terminal Goodbye domain |
| PF17110 | 1 | TFB6 | Subunit 11 of the general transcription factor TFIIH |
| PF17111 | 7 | Helo_like_N | Fungal N-terminal domain of STAND proteins |
| PF17119 | 2 | MMU163 | Mitochondrial protein up-regulated during meiosis |
| PF17120 | 1 | zf-RING_16 | RING/Ubox like zinc-binding domain |
| PF17121 | 1 | zf-C3HC4_5 | Zinc finger, C3HC4 type (RING finger) |
| PF17123 | 17 | zf-RING_11 | RING-like zinc finger |
| PF17124 | 1 | ThiJ_like | ThiJ/PfpI family-like |
| PF17125 | 1 | Methyltr_RsmF_N | N-terminal domain of 16S rRNA methyltransferase RsmF |
| PF17135 | 1 | Ribosomal_L18 | Ribosomal protein 60S L18 and 50S L18e |
| PF17144 | 1 | Ribosomal_L5e | Ribosomal large subunit proteins 60S L5, and 50S L18 |
| PF17146 | 1 | PIN_6 | PIN domain of ribonuclease |
| PF17147 | 1 | PFOR_II | Pyruvate:ferredoxin oxidoreductase core domain II |
| PF17168 | 2 | DUF5127 | Domain of unknown function (DUF5127) |
| PF17171 | 2 | GST_C_6 | Glutathione S-transferase, C-terminal domain |
| PF17172 | 2 | GST_N_4 | Glutathione S-transferase N-terminal domain |
| PF17177 | 3 | PPR_long | Pentacotripeptide-repeat region of PRORP |
| PF17183 | 1 | Blt1_C | Get5 carboxyl domain |
| PF17184 | 2 | Rit1_C | Rit1 N-terminal domain |
| PF17187 | 1 | Svf1_C | Svf1-like C-terminal lipocalin-like domain |
| PF17189 | 2 | Glyco_hydro_30C | Glycosyl hydrolase family 30 beta sandwich domain |
| PF17207 | 6 | MCM_OB | MCM OB domain |
| PF17208 | 1 | RBR | RNA binding Region |
| PF17215 | 1 | Rrp44_S1 | S1 domain |
| PF17216 | 1 | Rrp44_CSD1 | Rrp44-like cold shock domain |
| PF17233 | 1 | DUF5308 | Family of unknown function (DUF5308) |
| PF17242 | 1 | DUF5315 | Disordered region of unknown function (DUF5315) |
| PF17254 | 1 | DUF5321 | Family of unknown function (DUF5321) |
| PF17283 | 1 | Zn_ribbon_SprT | SprT-like zinc ribbon domain |
| PF17284 | 1 | Spermine_synt_N | Spermidine synthase tetramerisation domain |
| PF17285 | 1 | PRMT5_TIM | PRMT5 TIM barrel domain |
| PF17286 | 1 | PRMT5_C | PRMT5 oligomerisation domain |
| PF17291 | 1 | M60-like_N | N-terminal domain of M60-like peptidases |
| PF17292 | 1 | POB3_N | POB3-like N-terminal PH domain |
| PF17389 | 1 | Bac_rhamnosid6H | Bacterial alpha-L-rhamnosidase 6 hairpin glycosidase domain |
| PF17390 | 1 | Bac_rhamnosid_C | Bacterial alpha-L-rhamnosidase C-terminal domain |
| PF17403 | 1 | Nrap_D2 | Nrap protein PAP/OAS-like domain |
| PF17404 | 1 | Nrap_D3 | Nrap protein domain 3 |
| PF17405 | 1 | Nrap_D4 | Nrap protein nucleotidyltransferase domain 4 |
| PF17406 | 1 | Nrap_D5 | Nrap protein PAP/OAS1-like domain 5 |
| PF17407 | 1 | Nrap_D6 | Nrap protein domain 6 |
| PF17433 | 1 | Glyco_hydro_49N | Glycosyl hydrolase family 49 N-terminal Ig-like domain |
| PF17648 | 1 | DUF5519 | Family of unknown function (DUF5519) |
| PF17652 | 1 | Glyco_hydro81C | Glycosyl hydrolase family 81 C-terminal domain |
| PF17667 | 8 | Pkinase_fungal | Fungal protein kinase |
| PF17674 | 1 | HHH_9 | HHH domain |
| PF17675 | 1 | APG6_N | Apg6 coiled-coil region |
| PF17677 | 1 | Glyco_hydro38C2 | Glycosyl hydrolases family 38 C-terminal beta sandwich domain |
| PF17678 | 6 | Glyco_hydro_92N | Glycosyl hydrolase family 92 N-terminal domain |
| PF17681 | 5 | GCP_N_terminal | Gamma tubulin complex component N-terminal |
| PF17682 | 1 | Tau95_N | Tau95 Triple barrel domain |
| PF17683 | 1 | TFIIF_beta_N | TFIIF, beta subunit N-terminus |
| PF17733 | 1 | DUF5572 | Family of unknown function (DUF5572) |
| PF17745 | 1 | Ydr279_N | Ydr279p protein triple barrel domain |
| PF17747 | 1 | VID27_PH | VID27 PH-like domain |
| PF17748 | 1 | VID27_N | VID27 N-terminal region |
| PF17753 | 2 | Ig_mannosidase | Ig-fold domain |
| PF17759 | 1 | tRNA_synthFbeta | Phenylalanyl tRNA synthetase beta chain CLM domain |
| PF17763 | 4 | Asparaginase_C | Glutaminase/Asparaginase C-terminal domain |
| PF17767 | 1 | NAPRTase_N | Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain |
| PF17769 | 1 | PurK_C | Phosphoribosylaminoimidazole carboxylase C-terminal domain |
| PF17772 | 2 | zf-MYST | MYST family zinc finger domain |
| PF17777 | 2 | RL10P_insert | Insertion domain in 60S ribosomal protein L10P |
| PF17778 | 1 | BLACT_WH | Beta-lactamase associated winged helix domain |
| PF17781 | 1 | RPN1_RPN2_N | RPN1 N-terminal domain |
| PF17784 | 12 | Sulfotransfer_4 | Sulfotransferase domain |
| PF17786 | 7 | Mannosidase_ig | Mannosidase Ig/CBM-like domain |
| PF17799 | 1 | RRM_Rrp7 | Rrp7 RRM-like N-terminal domain |
| PF17800 | 1 | NPL | Nucleoplasmin-like domain |
| PF17801 | 3 | Melibiase_C | Alpha galactosidase C-terminal beta sandwich domain |
| PF17807 | 1 | zf-UBP_var | Variant UBP zinc finger |
| PF17820 | 4 | PDZ_6 | PDZ domain |
| PF17828 | 1 | FAS_N | N-terminal domain in fatty acid synthase subunit beta |
| PF17829 | 2 | GH115_C | Gylcosyl hydrolase family 115 C-terminal domain |
| PF17830 | 2 | STI1 | STI1 domain |
| PF17832 | 1 | Pre-PUA | Pre-PUA-like domain |
| PF17833 | 1 | UPF0113_N | UPF0113 Pre-PUA domain |
| PF17835 | 1 | NOG1_N | NOG1 N-terminal helical domain |
| PF17846 | 3 | XRN_M | Xrn1 helical domain |
| PF17849 | 2 | OB_Dis3 | Dis3-like cold-shock domain 2 (CSD2) |
| PF17851 | 1 | GH43_C2 | Beta xylosidase C-terminal Concanavalin A-like domain |
| PF17852 | 1 | Dynein_AAA_lid | Dynein heavy chain AAA lid domain |
| PF17855 | 6 | MCM_lid | MCM AAA-lid domain |
| PF17856 | 2 | TIP49_C | TIP49 AAA-lid domain |
| PF17862 | 17 | AAA_lid_3 | AAA+ lid domain |
| PF17863 | 1 | AAA_lid_2 | AAA lid domain |
| PF17865 | 1 | AAA_lid_5 | Midasin AAA lid domain |
| PF17866 | 2 | AAA_lid_6 | AAA lid domain |
| PF17867 | 3 | AAA_lid_7 | Midasin AAA lid domain |
| PF17871 | 2 | AAA_lid_9 | AAA lid domain |
| PF17872 | 2 | AAA_lid_10 | AAA lid domain |
| PF17874 | 11 | TPR_MalT | MalT-like TPR region |
| PF17875 | 1 | RPA43_OB | RPA43 OB domain in RNA Pol I |
| PF17877 | 1 | Dis3l2_C_term | DIS3-like exonuclease 2 C terminal |
| PF17900 | 3 | Peptidase_M1_N | Peptidase M1 N-terminal domain |
| PF17903 | 1 | KH_8 | Krr1 KH1 domain |
| PF17907 | 2 | AWS | AWS domain |
| PF17911 | 1 | Ski2_N | Ski2 N-terminal region |
| PF17917 | 6 | RT_RNaseH | RNase H-like domain found in reverse transcriptase |
| PF17919 | 5 | RT_RNaseH_2 | RNase H-like domain found in reverse transcriptase |
| PF17921 | 8 | Integrase_H2C2 | Integrase zinc binding domain |
| PF17947 | 1 | 4HB | Four helical bundle domain |
| PF17951 | 1 | FAS_meander | Fatty acid synthase meander beta sheet domain |
| PF17957 | 1 | Big_7 | Bacterial Ig domain |
| PF18004 | 1 | RPN2_C | 26S proteasome regulatory subunit RPN2 C-terminal domain |
| PF18005 | 1 | eIF3m_C_helix | eIF3 subunit M, C-terminal helix |
| PF18011 | 2 | Catalase_C | C-terminal domain found in long catalases |
| PF18017 | 1 | SAM_4 | SAM domain (Sterile alpha motif) |
| PF18018 | 1 | DNA_pol_D_N | DNA polymerase delta subunit OB-fold domain |
| PF18029 | 1 | Glyoxalase_6 | Glyoxalase-like domain |
| PF18031 | 1 | UCH_C | Ubiquitin carboxyl-terminal hydrolases |
| PF18035 | 1 | Bap31_Bap29_C | Bap31/Bap29 cytoplasmic coiled-coil domain |
| PF18044 | 3 | zf-CCCH_4 | CCCH-type zinc finger |
| PF18051 | 1 | RPN1_C | 26S proteasome non-ATPase regulatory subunit RPN1 C-terminal |
| PF18055 | 1 | RPN6_N | 26S proteasome regulatory subunit RPN6 N-terminal domain |
| PF18072 | 1 | FGAR-AT_linker | Formylglycinamide ribonucleotide amidotransferase linker domain |
| PF18076 | 1 | FGAR-AT_N | Formylglycinamide ribonucleotide amidotransferase N-terminal |
| PF18086 | 1 | PPIP5K2_N | Diphosphoinositol pentakisphosphate kinase 2 N-terminal domain |
| PF18097 | 1 | Vta1_C | Vta1 C-terminal domain |
| PF18098 | 1 | RPN5_C | 26S proteasome regulatory subunit RPN5 C-terminal domain |
| PF18107 | 1 | HTH_ABP1_N | Fission yeast centromere protein N-terminal domain |
| PF18115 | 1 | Tudor_3 | DNA repair protein Crb2 Tudor domain |
| PF18121 | 1 | TFA2_Winged_2 | TFA2 Winged helix domain 2 |
| PF18126 | 1 | Mitoc_mL59 | Mitochondrial ribosomal protein mL59 |
| PF18129 | 1 | SH3_12 | Xrn1 SH3-like domain |
| PF18132 | 1 | Tyosinase_C | Tyosinase C-terminal domain |
| PF18136 | 1 | DNApol_Exo | DNA mitochondrial polymerase exonuclease domain |
| PF18137 | 1 | ORC_WH_C | Origin recognition complex winged helix C-terminal |
| PF18141 | 1 | UPF1_1B_dom | RNA helicase UPF1, 1B domain |
| PF18142 | 3 | SLATT_fungal | SMODS and SLOG-associating 2TM effector domain |
| PF18147 | 1 | Suv3_C_1 | Suv3 C-terminal domain 1 |
| PF18149 | 1 | Helicase_PWI | N-terminal helicase PWI domain |
| PF18151 | 1 | DUF5601 | Domain of unknown function (DUF5601) |
| PF18158 | 3 | AidB_N | Adaptive response protein AidB N-terminal domain |
| PF18194 | 1 | Xrn1_D3 | Exoribonuclease 1 Domain-3 |
| PF18198 | 1 | AAA_lid_11 | Dynein heavy chain AAA lid domain |
| PF18210 | 1 | Knl1_RWD_C | Knl1 RWD C-terminal domain |
| PF18261 | 1 | Rpn9_C | Rpn9 C-terminal helix |
| PF18262 | 1 | PhetRS_B1 | Phe-tRNA synthetase beta subunit B1 domain |
| PF18263 | 1 | MCM6_C | MCM6 C-terminal winged-helix domain |
| PF18264 | 2 | preSET_CXC | CXC domain |
| PF18265 | 1 | Nas2_N | Nas2 N_terminal domain |
| PF18307 | 1 | Tfb2_C | Transcription factor Tfb2 (p52) C-terminal domain |
| PF18308 | 1 | GGA_N-GAT | N-terminal extension of GAT domain |
| PF18311 | 1 | Rrp40_N | Exosome complex exonuclease Rrp40 N-terminal domain |
| PF18313 | 1 | TLP1_add_C | Thiolase-like protein type 1 additional C-terminal domain |
| PF18314 | 1 | FAS_I_H | Fatty acid synthase type I helical domain |
| PF18317 | 2 | SDH_C | Shikimate 5'-dehydrogenase C-terminal domain |
| PF18323 | 1 | CSN5_C | Cop9 signalosome subunit 5 C-terminal domain |
| PF18325 | 1 | Fas_alpha_ACP | Fatty acid synthase subunit alpha Acyl carrier domain |
| PF18332 | 1 | XRN1_D1 | Exoribonuclease Xrn1 D1 domain |
| PF18334 | 1 | XRN1_D2_D3 | Exoribonuclease Xrn1 D2/D3 domain |
| PF18368 | 2 | Ig_GlcNase | Exo-beta-D-glucosaminidase Ig-fold domain |
| PF18376 | 1 | MDD_C | Mevalonate 5-diphosphate decarboxylase C-terminal domain |
| PF18378 | 1 | Nup188_C | Nuclear pore protein NUP188 C-terminal domain |
| PF18380 | 1 | GEN1_C | Holliday junction resolvase Gen1 C-terminal domain |
| PF18388 | 1 | ATG29_N | Atg29 N-terminal domain |
| PF18400 | 1 | Thioredoxin_12 | Thioredoxin-like domain |
| PF18401 | 1 | Thioredoxin_13 | Thioredoxin-like domain |
| PF18402 | 1 | Thioredoxin_14 | Thioredoxin-like domain |
| PF18403 | 1 | Thioredoxin_15 | Thioredoxin-like domain |
| PF18404 | 1 | Glyco_transf_24 | Glucosyltransferase 24 |
| PF18439 | 1 | zf_UBZ | Ubiquitin-Binding Zinc Finger |
| PF18477 | 1 | PIN_9 | PIN like domain |
| PF18503 | 1 | RPN6_C_helix | 26S proteasome subunit RPN6 C-terminal helix domain |
| PF18553 | 1 | PheRS_DBD3 | PheRS DNA binding domain 3 |
| PF18554 | 1 | PheRS_DBD2 | PheRS DNA binding domain 2 |
| PF18558 | 2 | HTH_51 | Helix-turn-helix domain |
| PF18564 | 2 | Glyco_hydro_5_C | Glycoside hydrolase family 5 C-terminal domain |
| PF18570 | 1 | Nup54_57_C | NUP57/Nup54 C-terminal domain |
| PF18592 | 1 | Tho1_MOS11_C | Tho1/MOS11 C-terminal domain |
| PF18595 | 3 | Nuf2_DHR10-like | Nuf2, DHR10-like domain |
| PF18600 | 2 | Ezh2_MCSS | MCSS domain |
| PF18601 | 2 | EZH2_N | EZH2 N-terminal domain |
| PF18777 | 1 | CRM1_repeat | Chromosome region maintenance or exportin repeat |
| PF18783 | 1 | IPU_b_solenoid | Isopullulanase beta-solenoid repeat |
| PF18784 | 1 | CRM1_repeat_2 | CRM1 / Exportin repeat 2 |
| PF18785 | 1 | Inv-AAD | Invertebrate-AID/APOBEC-deaminase |
| PF18787 | 1 | CRM1_repeat_3 | CRM1 / Exportin repeat 3 |
| PF18808 | 1 | Importin_rep_4 | Importin repeat |
| PF18816 | 1 | Importin_rep_5 | Importin repeat |
| PF18826 | 1 | bVLRF1 | Bacteroidetes VLRF1 release factor |
| PF18829 | 1 | Importin_rep_6 | Importin repeat 6 |
| PF18833 | 1 | TPR_22 | Tetratricopeptide repeat |
| PF18841 | 1 | B_solenoid_dext | Beta solenoid repeat from Dextranase |
| PF18854 | 1 | baeRF_family10 | Bacterial archaeo-eukaryotic release factor family 10 |
| PF18913 | 2 | FBPase_C | Fructose-1-6-bisphosphatase, C-terminal domain |
| PF18922 | 3 | DUF5672 | Protein of unknown function (DUF5672) |
| PF18947 | 10 | HAMP_2 | HAMP domain |
| PF18972 | 1 | Wheel | Cns1/TTC4 Wheel domain |
| PF18995 | 1 | PRT6_C | Proteolysis_6 C-terminal |
| PF19026 | 2 | HYPK_UBA | HYPK UBA domain |
| PF19031 | 1 | Intu_longin_1 | First Longin domain of INTU, CCZ1 and HPS4 |
| PF19036 | 1 | Fuz_longin_1 | First Longin domain of FUZ, MON1 and HPS1 |
| PF19037 | 1 | Fuz_longin_2 | Second Longin domain of FUZ, MON1 and HPS1 |
| PF19038 | 1 | Fuz_longin_3 | Third Longin domain of FUZ, MON1 and HPS1 |
| PF19050 | 6 | PhoD_2 | PhoD related phosphatase |
| PF19055 | 17 | ABC2_membrane_7 | ABC-2 type transporter |
| PF19086 | 4 | Terpene_syn_C_2 | Terpene synthase family 2, C-terminal metal binding |
| PF19117 | 1 | Mim2 | Mitochondrial import 2 |
| PF19189 | 1 | Mtf2 | Mtf2 family |
| PF19252 | 1 | HIND | HIND motif |
| PF19270 | 1 | FBO_C | F-box only protein C-terminal region |
| PF19271 | 3 | Nis1 | Nis1 family |
| PF19273 | 2 | Exportin-5 | Exportin-5 family |
| PF19274 | 1 | PI4K_N | PI4-kinase N-terminal region |
| PF19277 | 1 | GPAT_C | Glycerol-3-phosphate acyltransferase C-terminal region |
| PF19278 | 3 | Hydant_A_C | Hydantoinase/oxoprolinase C-terminal domain |
| PF19282 | 1 | Exportin-T | Exportin-T |
| PF19291 | 1 | TREH_N | Trehalase-like, N-terminal |
| PF19302 | 2 | DUF5915 | Domain of unknown function (DUF5915) |
| PF19303 | 1 | Anticodon_3 | Anticodon binding domain of methionyl tRNA ligase |
| PF19304 | 1 | PGDH_inter | D-3-phosphoglycerate dehydrogenase intervening domain |
| PF19305 | 2 | MmgE_PrpD_C | MmgE/PrpD C-terminal domain |
| PF19314 | 1 | DUF5917 | Family of unknown function (DUF5917) |
| PF19316 | 1 | PIGO_PIGG | GPI ethanolamine phosphate transferase membrane region |
| PF19326 | 1 | AMP_deaminase | AMP deaminase |
| PF19327 | 2 | Ap4A_phos_N | Ap4A phosphorylase N-terminal domain |
| PF19343 | 3 | DUF5923 | Family of unknown function (DUF5923) |
| PF19418 | 1 | DEPDC5_CTD | DEPDC5 protein C-terminal region |
| PF19422 | 1 | Ariadne | Ariadne domain |
| PF19445 | 1 | eIF3h_C | C-terminal region of eIF3h |
| PF19566 | 1 | Snx8_BAR_dom | Sorting nexin 8/Mvp1 BAR domain |
| PF19834 | 1 | DUF6314 | Family of unknown function (DUF6314) |
| PF20055 | 1 | DUF6454 | Family of unknown function (DUF6454) |
| PF20143 | 3 | NAD_kinase_C | ATP-NAD kinase C-terminal domain |
| PF20144 | 1 | TIG_SUH | TIG domain |
| PF20150 | 25 | 2EXR | 2EXR family |
| PF20162 | 1 | Etd1 | Septation protein etd1 |
| PF20163 | 1 | DUF6536 | Family of unknown function (DUF6536) |
| PF20168 | 5 | PDS5 | Sister chromatid cohesion protein PDS5 protein |
| PF20173 | 2 | DUF6539 | Family of unknown function (DUF6539) |
| PF20174 | 6 | DUF6540 | Family of unknown function (DUF6540) |
| PF20175 | 1 | Tra1_central | Tra1 HEAT repeat central region |
| PF20179 | 1 | MSS51_C | MSS51 C-terminal domain |
| PF20180 | 1 | UQCC2_CBP6 | Complex III assembly factor UQCC2/CBP6 |
| PF20183 | 5 | DUF6546 | Family of unknown function (DUF6546) |
| PF20206 | 1 | Tra1_ring | Tra1 HEAT repeat ring region |
| PF20209 | 12 | DUF6570 | Domain of unknown function (DUF6570) |
| PF20210 | 1 | Laa1_Sip1_HTR5 | Laa1/Sip1/HEATR5 HEAT repeat region |
| PF20222 | 1 | DUF6581 | Family of unknown function (DUF6581) |
| PF20233 | 1 | DUF6590 | Family of unknown function (DUF6590) |
| PF20237 | 7 | DUF6594 | Family of unknown function (DUF6594) |
| PF20238 | 6 | DUF6595 | Family of unknown function (DUF6595) |
| PF20246 | 6 | DUF6601 | Family of unknown function (DUF6601) |
| PF20252 | 1 | BIG2_C | BIG2 C-terminal domain |
| PF20253 | 2 | DUF6604 | Family of unknown function (DUF6604) |
| PF20254 | 2 | DUF6605 | Domain of unknown function (DUF6605) |
| PF20255 | 2 | DUF6606 | Family of unknown function (DUF6606) |
| PF20256 | 1 | MoCoBD_2 | Molybdopterin cofactor-binding domain |
| PF20263 | 1 | LYRM2-like | LYR motif-containing protein 2-like |
| PF20268 | 1 | SBDS_C | SBDS protein, C-terminal domain |
| PF20305 | 2 | pYEATS | prokaryotic YEATS domain |
| PF20328 | 2 | DUF6623 | Family of unknown function (DUF6623) |
| PF20345 | 1 | DUF6640 | Family of unknown function (DUF6640) |
| PF20354 | 1 | DUF6649 | Family of unknown function (DUF6649) |
| PF20399 | 2 | PH_20 | PH domain |
| PF20400 | 2 | BAR_4 | BAR-like domain |
| PF20413 | 1 | Kiaa1109_N | Kiaa1109 N-terminal region |
| PF20416 | 1 | DUF6700 | Domain of unknown function (DUF6700) |
| PF20428 | 1 | Sey1_3HB | Sey1 three-helix bundle domain |
| PF20434 | 32 | BD-FAE | BD-FAE |
| PF20463 | 1 | PDH_C | Prephenate dehydrogenase, dimerization domain |
| PF20470 | 1 | HTH_61 | Helix-turn-helix domain |
| PF20497 | 1 | SWI-SNF_Ssr4_C | SWI/SNF and RSC complexes subunit Ssr4 C-terminal |
| PF20510 | 3 | HgmA_N | Homogentisate 1,2-dioxygenase N-terminal |
| PF20511 | 2 | PMI_typeI_cat | Phosphomannose isomerase type I, catalytic domain |
| PF20512 | 1 | PMI_typeI_hel | Phosphomannose isomerase type I, helical insertion domain |
| PF20516 | 4 | PDDEXK_12 | PD-(D/E)XK nuclease superfamily |
| PF20520 | 1 | Ac45-VOA1_TM | V0 complex accessory subunit Ac45/VOA1 transmembrane domain |