© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g994.t1 |
| Gene name | |
| Location | scaffold_01:2650230..2652452 |
| Strand | - |
| Gene length (bp) | 2222 |
| Transcript length (bp) | 2157 |
| Coding sequence length (bp) | 2157 |
| Protein length (aa) | 719 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF14629 | ORC4_C | Origin recognition complex (ORC) subunit 4 C-terminus | 4.4E-48 | 468 | 705 |
| PF13191 | AAA_16 | AAA ATPase domain | 1.9E-16 | 266 | 430 |
| PF00004 | AAA | ATPase family associated with various cellular activities (AAA) | 4.7E-08 | 292 | 453 |
| PF05729 | NACHT | NACHT domain | 6.0E-07 | 292 | 445 |
| PF07693 | KAP_NTPase | KAP family P-loop domain | 1.5E-04 | 276 | 363 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016887 | ATP hydrolysis activity | Yes |
| GO:0005524 | ATP binding | Yes |
| GO:0005488 | binding | No |
| GO:0032553 | ribonucleotide binding | No |
| GO:0035639 | purine ribonucleoside triphosphate binding | No |
| GO:0032559 | adenyl ribonucleotide binding | No |
| GO:0043167 | ion binding | No |
| GO:0016818 | hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | No |
| GO:0017076 | purine nucleotide binding | No |
| GO:0097367 | carbohydrate derivative binding | No |
| GO:0016462 | pyrophosphatase activity | No |
| GO:0030554 | adenyl nucleotide binding | No |
| GO:0000166 | nucleotide binding | No |
| GO:0003824 | catalytic activity | No |
| GO:0036094 | small molecule binding | No |
| GO:0003674 | molecular_function | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0032555 | purine ribonucleotide binding | No |
| GO:0016787 | hydrolase activity | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0043168 | anion binding | No |
| GO:0016817 | hydrolase activity, acting on acid anhydrides | No |
| GO:1901265 | nucleoside phosphate binding | No |
| GO:0017111 | nucleoside-triphosphatase activity | No |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 16.54 | 8.95 | 24.12 |
| 5d_25C | Five days - 25 degrees Celsius | 13.76 | 7.07 | 20.45 |
| 7d_25C | Seven days - 25 degrees Celsius | 10.52 | 5.01 | 16.03 |
| 10d_25C | Ten days - 25 degrees Celsius | 7.64 | 3.33 | 11.96 |
| 7d_15C | Seven days - 15 degrees Celsius | 11.83 | 5.88 | 17.79 |
| 7d_30C | Seven days - 30 degrees Celsius | 12.18 | 6.05 | 18.31 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.557573 | no |
| 3d_25C | 7d_25C | 0.093704 | no |
| 3d_25C | 7d_15C | 0.230256 | no |
| 3d_25C | 7d_30C | 0.278288 | no |
| 3d_25C | 10d_25C | 0.002297 | yes |
| 5d_25C | 7d_25C | 0.384457 | no |
| 5d_25C | 7d_15C | 0.666594 | no |
| 5d_25C | 7d_30C | 0.735684 | no |
| 5d_25C | 10d_25C | 0.038184 | yes |
| 7d_25C | 7d_15C | 0.755658 | no |
| 7d_25C | 7d_30C | 0.684487 | no |
| 7d_25C | 10d_25C | 0.331648 | no |
| 7d_15C | 7d_30C | 0.947906 | no |
| 7d_15C | 10d_25C | 0.148082 | no |
| 7d_30C | 10d_25C | 0.114502 | no |
| Orthofinder run ID | 2 |
| Orthogroup | 3393 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g994.t1 MPRASKRRRVSEDVDGDIDMGNDDQDVFSVPTSPDNHGISPTPVKSASRRQTTRGDNPDPVTTGQGGEVEEDEAQ TPARIGTRSSGRQRKTPKRYDQEAVTPSSRRKQAATPSRSARPTRSAQKLRQSPVEDEEEDEPEFKEEDDDDDDM DLDEPSPEPAPRTITRTRSKRSTAKPRSKKALVAEPKEKSPSPGYQDGLDDIDTIQLQQDLYHDQPEAHETIDVS EPLPEYAGKFQALCQTGLGDEMRILSTILLEKLTGKRQIPVRGLEAEYQKVHQLIEQTVSIGEGNSMLLLGSRGC GKTAIVESIISSLRKEHCNEFHVVRLNGFLHTDDRLALREMWRQLGRETHTEEDAAKVSSYADTMATLLALLSHP EELFGTSGDPGSKTAAKSIVILLDEFDLFVTHPRQTLLYNLFDIAQARKAPITVIGLTTKVDVTEMLEKRVKSRF SHRYTYVPLPRSFEAFSDICLGSLDLSDAEMVDIADELGSERILVESNKWNTLLGGWKEYLKHLWNDNEFQFHLK RIYNQTKSAKEFFNSALLPIGDLLQSVSTADAPIPEVPTPKSFSSQSLECPDPAPLPFSTSITSSSPSSLPLALL VAATRLAALFDPGNDGSQSQSMGPLALSFPAAYAEYVRLLTSAKVSASVSGASATPGRVWGRDVARESWERLLSW GLVTPVGSGNGTADGQMFRVEISFEEVIEMAGSGGALGQWWRG* |
| Coding | >Pro_DTO377G3_2|g994.t1 ATGCCCCGAGCATCTAAGAGGAGAAGGGTCTCCGAGGACGTTGATGGAGACATCGATATGGGAAATGATGATCAA GACGTATTCTCCGTCCCGACATCCCCCGACAATCACGGAATTTCTCCCACACCGGTGAAAAGTGCATCGCGGCGT CAAACTACCCGCGGAGACAACCCAGACCCCGTAACGACGGGCCAAGGCGGCGAGGTTGAGGAAGATGAAGCACAA ACTCCCGCACGAATTGGGACACGGTCAAGTGGGCGGCAACGCAAAACACCAAAAAGGTACGACCAAGAAGCCGTA ACACCCTCATCGAGGAGAAAACAAGCAGCCACTCCTTCGAGAAGTGCGCGTCCCACACGAAGCGCGCAAAAGCTG CGGCAATCCCCGGTAGAAGACGAAGAAGAAGACGAACCTGAATTTAAAGAGGAAGATGATGACGATGATGACATG GACCTCGACGAGCCGTCCCCGGAACCCGCCCCTCGTACAATTACAAGGACCAGATCGAAGAGAAGCACCGCGAAG CCTAGATCCAAGAAAGCCTTGGTCGCAGAGCCGAAAGAGAAGTCACCTTCGCCTGGGTATCAGGACGGCTTGGAT GACATCGATACAATACAACTCCAGCAAGACCTTTATCATGACCAGCCGGAGGCGCATGAGACTATCGATGTCTCC GAGCCGTTGCCGGAATATGCTGGAAAATTCCAGGCGCTCTGTCAGACGGGCCTTGGGGACGAAATGCGCATTCTC TCGACTATTCTTCTCGAAAAGCTGACAGGGAAACGACAGATTCCAGTGCGGGGACTCGAAGCTGAATACCAGAAG GTTCATCAGCTCATTGAACAGACCGTCTCTATCGGAGAGGGCAACTCCATGCTTCTTCTTGGATCCAGGGGATGC GGCAAGACGGCGATTGTGGAATCTATCATTTCGTCTCTTAGAAAGGAGCATTGCAATGAGTTTCACGTCGTTCGT CTCAATGGGTTCTTGCACACAGACGACCGTCTAGCTTTGCGAGAAATGTGGCGCCAACTTGGCCGTGAGACGCAT ACCGAGGAAGATGCGGCTAAGGTCAGTTCTTATGCGGATACGATGGCCACGCTCTTGGCTTTATTGTCACATCCA GAGGAACTCTTCGGGACTTCTGGGGACCCAGGATCGAAGACTGCTGCGAAATCCATTGTGATCTTGTTGGATGAG TTCGACCTATTCGTCACTCACCCACGACAGACTTTGTTGTATAATCTGTTCGATATTGCCCAAGCCCGCAAAGCC CCCATCACGGTGATTGGGCTCACGACAAAGGTCGACGTAACCGAAATGCTCGAGAAGCGTGTCAAGAGTCGATTT AGTCATCGTTATACTTACGTTCCTCTACCTCGATCCTTCGAGGCCTTTTCAGATATCTGCCTAGGGAGCCTGGAT CTCAGTGACGCCGAAATGGTTGATATTGCAGATGAACTTGGGTCTGAACGCATTCTAGTAGAGTCGAACAAGTGG AATACACTGCTTGGGGGATGGAAGGAATATTTGAAGCATTTGTGGAATGACAACGAATTTCAATTCCACCTCAAG CGTATCTACAACCAAACCAAATCAGCAAAGGAGTTTTTCAACAGCGCGCTTCTCCCCATCGGCGACTTGCTACAA AGTGTGTCGACCGCCGACGCACCTATACCCGAAGTCCCAACCCCGAAAAGCTTCTCTTCCCAATCCCTTGAGTGC CCAGACCCAGCACCTCTCCCATTCTCCACATCCATCACATCATCCAGTCCCTCGTCATTGCCACTGGCTTTGTTG GTAGCCGCAACACGCTTGGCAGCCCTGTTCGACCCCGGAAACGACGGGTCCCAGTCACAGAGCATGGGACCACTT GCGCTTTCATTCCCCGCCGCATACGCAGAATACGTTCGGCTCCTGACATCCGCAAAGGTATCTGCCTCGGTGTCG GGAGCTTCTGCCACACCAGGCCGTGTCTGGGGCCGAGATGTGGCCCGAGAGTCTTGGGAAAGACTGCTCAGCTGG GGACTCGTGACACCCGTGGGTAGTGGGAACGGCACTGCTGACGGGCAGATGTTCCGTGTGGAAATTAGTTTCGAG GAGGTCATTGAAATGGCTGGCTCTGGGGGTGCATTGGGCCAGTGGTGGCGCGGATAG |
| Transcript | >Pro_DTO377G3_2|g994.t1 ATGCCCCGAGCATCTAAGAGGAGAAGGGTCTCCGAGGACGTTGATGGAGACATCGATATGGGAAATGATGATCAA GACGTATTCTCCGTCCCGACATCCCCCGACAATCACGGAATTTCTCCCACACCGGTGAAAAGTGCATCGCGGCGT CAAACTACCCGCGGAGACAACCCAGACCCCGTAACGACGGGCCAAGGCGGCGAGGTTGAGGAAGATGAAGCACAA ACTCCCGCACGAATTGGGACACGGTCAAGTGGGCGGCAACGCAAAACACCAAAAAGGTACGACCAAGAAGCCGTA ACACCCTCATCGAGGAGAAAACAAGCAGCCACTCCTTCGAGAAGTGCGCGTCCCACACGAAGCGCGCAAAAGCTG CGGCAATCCCCGGTAGAAGACGAAGAAGAAGACGAACCTGAATTTAAAGAGGAAGATGATGACGATGATGACATG GACCTCGACGAGCCGTCCCCGGAACCCGCCCCTCGTACAATTACAAGGACCAGATCGAAGAGAAGCACCGCGAAG CCTAGATCCAAGAAAGCCTTGGTCGCAGAGCCGAAAGAGAAGTCACCTTCGCCTGGGTATCAGGACGGCTTGGAT GACATCGATACAATACAACTCCAGCAAGACCTTTATCATGACCAGCCGGAGGCGCATGAGACTATCGATGTCTCC GAGCCGTTGCCGGAATATGCTGGAAAATTCCAGGCGCTCTGTCAGACGGGCCTTGGGGACGAAATGCGCATTCTC TCGACTATTCTTCTCGAAAAGCTGACAGGGAAACGACAGATTCCAGTGCGGGGACTCGAAGCTGAATACCAGAAG GTTCATCAGCTCATTGAACAGACCGTCTCTATCGGAGAGGGCAACTCCATGCTTCTTCTTGGATCCAGGGGATGC GGCAAGACGGCGATTGTGGAATCTATCATTTCGTCTCTTAGAAAGGAGCATTGCAATGAGTTTCACGTCGTTCGT CTCAATGGGTTCTTGCACACAGACGACCGTCTAGCTTTGCGAGAAATGTGGCGCCAACTTGGCCGTGAGACGCAT ACCGAGGAAGATGCGGCTAAGGTCAGTTCTTATGCGGATACGATGGCCACGCTCTTGGCTTTATTGTCACATCCA GAGGAACTCTTCGGGACTTCTGGGGACCCAGGATCGAAGACTGCTGCGAAATCCATTGTGATCTTGTTGGATGAG TTCGACCTATTCGTCACTCACCCACGACAGACTTTGTTGTATAATCTGTTCGATATTGCCCAAGCCCGCAAAGCC CCCATCACGGTGATTGGGCTCACGACAAAGGTCGACGTAACCGAAATGCTCGAGAAGCGTGTCAAGAGTCGATTT AGTCATCGTTATACTTACGTTCCTCTACCTCGATCCTTCGAGGCCTTTTCAGATATCTGCCTAGGGAGCCTGGAT CTCAGTGACGCCGAAATGGTTGATATTGCAGATGAACTTGGGTCTGAACGCATTCTAGTAGAGTCGAACAAGTGG AATACACTGCTTGGGGGATGGAAGGAATATTTGAAGCATTTGTGGAATGACAACGAATTTCAATTCCACCTCAAG CGTATCTACAACCAAACCAAATCAGCAAAGGAGTTTTTCAACAGCGCGCTTCTCCCCATCGGCGACTTGCTACAA AGTGTGTCGACCGCCGACGCACCTATACCCGAAGTCCCAACCCCGAAAAGCTTCTCTTCCCAATCCCTTGAGTGC CCAGACCCAGCACCTCTCCCATTCTCCACATCCATCACATCATCCAGTCCCTCGTCATTGCCACTGGCTTTGTTG GTAGCCGCAACACGCTTGGCAGCCCTGTTCGACCCCGGAAACGACGGGTCCCAGTCACAGAGCATGGGACCACTT GCGCTTTCATTCCCCGCCGCATACGCAGAATACGTTCGGCTCCTGACATCCGCAAAGGTATCTGCCTCGGTGTCG GGAGCTTCTGCCACACCAGGCCGTGTCTGGGGCCGAGATGTGGCCCGAGAGTCTTGGGAAAGACTGCTCAGCTGG GGACTCGTGACACCCGTGGGTAGTGGGAACGGCACTGCTGACGGGCAGATGTTCCGTGTGGAAATTAGTTTCGAG GAGGTCATTGAAATGGCTGGCTCTGGGGGTGCATTGGGCCAGTGGTGGCGCGGATAG |
| Gene | >Pro_DTO377G3_2|g994.t1 ATGCCCCGAGCATCTAAGAGGAGAAGGGTCTCCGAGGACGTTGATGGAGACATCGATATGGGAAATGATGATCAA GACGTATTCTCCGTCCCGACATCCCCCGACAATCACGGAATTTCTCCCACACCGGTGAAAAGTGCATCGCGGCGT CAAACTACCCGCGGAGACAACCCAGACCCCGTAACGACGGGCCAAGGCGGCGAGGTTGAGGAAGATGAAGCACAA ACTCCCGCACGAATTGGGACACGGTCAAGTGGGCGGCAACGCAAAACACCAAAAAGGTACGACCAAGAAGCCGTA ACACCCTCATCGAGGAGAAAACAAGCAGCCACTCCTTCGAGAAGTGCGCGTCCCACACGAAGCGCGCAAAAGCTG CGGCAATCCCCGGTAGAAGACGAAGAAGAAGACGAACCTGAATTTAAAGAGGAAGATGATGACGATGATGACATG GACCTCGACGAGCCGTCCCCGGAACCCGCCCCTCGTACAATTACAAGGACCAGATCGAAGAGAAGCACCGCGAAG CCTAGATCCAAGAAAGCCTTGGTCGCAGAGCCGAAAGAGAAGTCACCTTCGCCTGGGTATCAGGACGGCTTGGAT GACATCGATACAATACAACTCCAGCAAGACCTTTATCATGACCAGCCGGAGGCGCATGAGACTATCGATGTCTCC GAGCCGTTGCCGGAATATGCTGGAAAATTCCAGGCGCTCTGTCAGACGGGCCTTGGGGACGAAATGCGCATTCTC TCGACTATTCTTCTCGAAAAGCTGACAGGGAAACGACAGATTCCAGTGCGGGGACTCGAAGCTGAATACCAGAAG GTTCATCAGCTCATTGAACAGACCGTCTCTATCGGAGAGGGCAACTCCATGCTTCTTCTTGGATCCAGGGGATGC GGCAAGACGGCGATTGTGGAATCTATCATTTCGTCTCTTAGAAAGGAGCATTGCAATGAGTTTCACGTCGTTCGT CTCAATGGGTTCTTGCACACAGACGACCGTCTAGCTTTGCGAGAAATGTGGCGCCAACTTGGCCGTGAGACGCAT ACCGAGGAAGATGCGGCTAAGGTCAGTTCTTATGCGGATACGATGGCCACGCTCTTGGCTTTATTGTCACATCCA GAGGAACTCTTCGGGACTTCTGGGGACCCAGGATCGAAGACTGCTGCGAAATCCATTGTGATCTTGTTGGATGAG TTCGACCTATTCGTCACTCACCCACGACAGACTTTGTTGTATAATCTGTTCGATATTGCCCAAGCCCGCAAAGCC CCCATCACGGTGATTGGGCTCACGACAAAGGTCGACGTAACCGAAATGCTCGAGAAGCGTGTCAAGAGTCGATTT AGTCATCGTTATACTTACGTTCCTCTACCTCGATCCTTCGAGGCCTTTTCAGATATCTGCCTAGGGAGCCTGGAT CTCAGTGACGCCGAAATGGTTGATATTGCAGATGAACTTGGGTCTGAACGCATTCTAGTAGAGTCGAACAAGTGG AATACACTGCTTGGGGGATGGAAGGAATATTTGAAGGTAAGATCTGTATTTTCCTTTATCCAATTAATTGCATCT TTGCTAAATCGCTGTCTTGAAAATAGCATTTGTGGAATGACAACGAATTTCAATTCCACCTCAAGCGTATCTACA ACCAAACCAAATCAGCAAAGGAGTTTTTCAACAGCGCGCTTCTCCCCATCGGCGACTTGCTACAAAGTGTGTCGA CCGCCGACGCACCTATACCCGAAGTCCCAACCCCGAAAAGCTTCTCTTCCCAATCCCTTGAGTGCCCAGACCCAG CACCTCTCCCATTCTCCACATCCATCACATCATCCAGTCCCTCGTCATTGCCACTGGCTTTGTTGGTAGCCGCAA CACGCTTGGCAGCCCTGTTCGACCCCGGAAACGACGGGTCCCAGTCACAGAGCATGGGACCACTTGCGCTTTCAT TCCCCGCCGCATACGCAGAATACGTTCGGCTCCTGACATCCGCAAAGGTATCTGCCTCGGTGTCGGGAGCTTCTG CCACACCAGGCCGTGTCTGGGGCCGAGATGTGGCCCGAGAGTCTTGGGAAAGACTGCTCAGCTGGGGACTCGTGA CACCCGTGGGTAGTGGGAACGGCACTGCTGACGGGCAGATGTTCCGTGTGGAAATTAGTTTCGAGGAGGTCATTG AAATGGCTGGCTCTGGGGGTGCATTGGGCCAGTGGTGGCGCGGATAG |