© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g987.t1 |
| Gene name | |
| Location | scaffold_01:2621856..2623375 |
| Strand | - |
| Gene length (bp) | 1519 |
| Transcript length (bp) | 1401 |
| Coding sequence length (bp) | 1401 |
| Protein length (aa) | 467 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00953 | Glycos_transf_4 | Glycosyl transferase family 4 | 1.1E-33 | 148 | 321 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016021 | integral component of membrane | Yes |
| GO:0008963 | phospho-N-acetylmuramoyl-pentapeptide-transferase activity | Yes |
| GO:0016780 | phosphotransferase activity, for other substituted phosphate groups | No |
| GO:0016772 | transferase activity, transferring phosphorus-containing groups | No |
| GO:0005575 | cellular_component | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0016740 | transferase activity | No |
| GO:0003674 | molecular_function | No |
| GO:0003824 | catalytic activity | No |
| GO:0031224 | intrinsic component of membrane | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 29 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 13 | 32 | 19 |
| 2 | 37 | 59 | 22 |
| 3 | 80 | 102 | 22 |
| 4 | 141 | 160 | 19 |
| 5 | 173 | 192 | 19 |
| 6 | 212 | 234 | 22 |
| 7 | 241 | 259 | 18 |
| 8 | 274 | 296 | 22 |
| 9 | 309 | 331 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 35.84 | 20.18 | 51.50 |
| 5d_25C | Five days - 25 degrees Celsius | 24.57 | 12.87 | 36.28 |
| 7d_25C | Seven days - 25 degrees Celsius | 24.17 | 12.59 | 35.75 |
| 10d_25C | Ten days - 25 degrees Celsius | 23.57 | 12.25 | 34.88 |
| 7d_15C | Seven days - 15 degrees Celsius | 30.72 | 16.60 | 44.84 |
| 7d_30C | Seven days - 30 degrees Celsius | 20.97 | 10.44 | 31.50 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.147337 | no |
| 3d_25C | 7d_25C | 0.126810 | no |
| 3d_25C | 7d_15C | 0.628280 | no |
| 3d_25C | 7d_30C | 0.031312 | yes |
| 3d_25C | 10d_25C | 0.097583 | no |
| 5d_25C | 7d_25C | 0.968055 | no |
| 5d_25C | 7d_15C | 0.466411 | no |
| 5d_25C | 7d_30C | 0.642976 | no |
| 5d_25C | 10d_25C | 0.916243 | no |
| 7d_25C | 7d_15C | 0.425906 | no |
| 7d_25C | 7d_30C | 0.686838 | no |
| 7d_25C | 10d_25C | 0.952490 | no |
| 7d_15C | 7d_30C | 0.165132 | no |
| 7d_15C | 10d_25C | 0.349761 | no |
| 7d_30C | 10d_25C | 0.744854 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g987.t1 MNNPSTLSRKETWRLLALVGAGLAILNATFQGDGAPLVASIALCGIVFAVAFSLIRWLGPVFLKAGLKGKDMAKP SRPEIPETMGAVCAVVYLMALIMFIPFAFYKDIVAATSGGGNRDVVVPSQHIENGRFLHRFPHGKLASYLSGLLS LQSVVILGIGDDLFDIRWRHKVLIPAFSAIPMLIVYFVDFGVTQVVVPVPLQPYLGDVVDLGWLYYMYMAAVAIF CPNAINMLAGINGIEVAQSLVIAIQLLFNDAMYLAPMTPYPHPATDSHLLSMYFLLPFIGVSAALLCHNWYPSKV FVGDTYCYFAGMVFAVVGILGHFSKTLLLLFIPQIFNFLYSTPQLFHLIPCPRHRLPKFHASTGLLDASVTEWTS PPSHFIDTVLRLLHTLKLVRITQDENGRITESSNLTILNLWLVWVGPMREDQLAWHMVAVQTACGMLGLFVRHRL ALLVFHHDNREFGFIA* |
| Coding | >Pro_DTO377G3_2|g987.t1 ATGAATAACCCAAGCACCCTCTCCCGTAAGGAGACTTGGCGTCTACTGGCACTCGTGGGGGCCGGTTTAGCCATA CTCAACGCCACGTTCCAAGGCGATGGGGCGCCTTTAGTCGCTTCAATTGCACTATGTGGCATAGTATTTGCTGTG GCTTTTAGTCTGATCAGGTGGCTCGGCCCTGTATTTTTGAAAGCAGGACTTAAAGGCAAGGATATGGCAAAGCCT AGCCGGCCCGAGATACCTGAAACTATGGGTGCAGTCTGCGCAGTTGTGTATCTGATGGCGCTCATTATGTTCATT CCTTTTGCCTTCTACAAGGATATCGTTGCAGCCACATCCGGAGGCGGAAACCGTGACGTTGTGGTTCCATCGCAA CATATTGAGAATGGCCGATTTCTTCATCGATTTCCACATGGCAAGCTCGCCTCCTACCTTTCTGGTCTTCTGTCT TTGCAATCCGTTGTGATTCTCGGAATCGGTGATGATCTATTCGACATTCGCTGGAGACACAAAGTCCTCATCCCT GCTTTTTCCGCAATCCCCATGCTCATTGTGTACTTTGTCGACTTTGGCGTCACTCAAGTCGTCGTGCCGGTGCCG CTGCAACCTTACCTGGGTGATGTTGTCGATCTTGGATGGCTGTACTACATGTATATGGCAGCGGTGGCAATCTTC TGTCCAAACGCGATCAACATGTTGGCAGGCATTAATGGTATCGAGGTAGCTCAGTCACTGGTGATTGCGATCCAA TTGCTATTCAATGATGCGATGTACCTTGCACCTATGACACCATACCCGCACCCTGCCACCGACTCGCACTTATTG TCGATGTACTTCCTGCTTCCATTCATCGGTGTGTCGGCAGCCCTTCTATGCCATAATTGGTATCCGTCGAAGGTG TTTGTGGGCGATACATACTGCTATTTCGCAGGAATGGTGTTTGCCGTGGTTGGTATCCTAGGGCATTTCAGCAAA ACCCTGTTACTACTGTTCATTCCACAGATCTTCAATTTCCTTTACTCCACTCCCCAACTATTCCATCTCATTCCT TGTCCTCGTCATCGGTTACCAAAGTTCCACGCTTCCACTGGGTTGCTGGACGCTTCAGTCACGGAGTGGACGAGT CCTCCTTCGCACTTCATCGATACCGTACTACGCTTATTACACACCTTGAAACTGGTGCGAATCACCCAAGACGAG AATGGTCGAATCACTGAATCCAGTAATCTCACCATCTTGAATCTTTGGCTGGTGTGGGTGGGTCCAATGCGAGAA GACCAACTGGCGTGGCACATGGTTGCAGTACAAACTGCCTGTGGGATGCTCGGTCTGTTCGTCAGACATCGCCTT GCATTGCTCGTGTTCCACCATGATAATAGGGAGTTCGGTTTTATCGCATAG |
| Transcript | >Pro_DTO377G3_2|g987.t1 ATGAATAACCCAAGCACCCTCTCCCGTAAGGAGACTTGGCGTCTACTGGCACTCGTGGGGGCCGGTTTAGCCATA CTCAACGCCACGTTCCAAGGCGATGGGGCGCCTTTAGTCGCTTCAATTGCACTATGTGGCATAGTATTTGCTGTG GCTTTTAGTCTGATCAGGTGGCTCGGCCCTGTATTTTTGAAAGCAGGACTTAAAGGCAAGGATATGGCAAAGCCT AGCCGGCCCGAGATACCTGAAACTATGGGTGCAGTCTGCGCAGTTGTGTATCTGATGGCGCTCATTATGTTCATT CCTTTTGCCTTCTACAAGGATATCGTTGCAGCCACATCCGGAGGCGGAAACCGTGACGTTGTGGTTCCATCGCAA CATATTGAGAATGGCCGATTTCTTCATCGATTTCCACATGGCAAGCTCGCCTCCTACCTTTCTGGTCTTCTGTCT TTGCAATCCGTTGTGATTCTCGGAATCGGTGATGATCTATTCGACATTCGCTGGAGACACAAAGTCCTCATCCCT GCTTTTTCCGCAATCCCCATGCTCATTGTGTACTTTGTCGACTTTGGCGTCACTCAAGTCGTCGTGCCGGTGCCG CTGCAACCTTACCTGGGTGATGTTGTCGATCTTGGATGGCTGTACTACATGTATATGGCAGCGGTGGCAATCTTC TGTCCAAACGCGATCAACATGTTGGCAGGCATTAATGGTATCGAGGTAGCTCAGTCACTGGTGATTGCGATCCAA TTGCTATTCAATGATGCGATGTACCTTGCACCTATGACACCATACCCGCACCCTGCCACCGACTCGCACTTATTG TCGATGTACTTCCTGCTTCCATTCATCGGTGTGTCGGCAGCCCTTCTATGCCATAATTGGTATCCGTCGAAGGTG TTTGTGGGCGATACATACTGCTATTTCGCAGGAATGGTGTTTGCCGTGGTTGGTATCCTAGGGCATTTCAGCAAA ACCCTGTTACTACTGTTCATTCCACAGATCTTCAATTTCCTTTACTCCACTCCCCAACTATTCCATCTCATTCCT TGTCCTCGTCATCGGTTACCAAAGTTCCACGCTTCCACTGGGTTGCTGGACGCTTCAGTCACGGAGTGGACGAGT CCTCCTTCGCACTTCATCGATACCGTACTACGCTTATTACACACCTTGAAACTGGTGCGAATCACCCAAGACGAG AATGGTCGAATCACTGAATCCAGTAATCTCACCATCTTGAATCTTTGGCTGGTGTGGGTGGGTCCAATGCGAGAA GACCAACTGGCGTGGCACATGGTTGCAGTACAAACTGCCTGTGGGATGCTCGGTCTGTTCGTCAGACATCGCCTT GCATTGCTCGTGTTCCACCATGATAATAGGGAGTTCGGTTTTATCGCATAG |
| Gene | >Pro_DTO377G3_2|g987.t1 ATGAATAACCCAAGCACCCTCTCCCGTAAGGAGACTTGGCGTCTACTGGCACTCGTGGGGGCCGGTTTAGCCATA CTCAACGCCACGTTCCAAGGCGATGGGGCGCCTTTAGTCGCTTCAATTGCACTATGTGGCATAGTATTTGCTGTG GCTTTTAGTCTGATCAGGTGGCTCGGCCCTGTATTTTTGAAAGCAGGACTTAAAGGCAAGGATATGGCAAAGCCT AGCCGGCCCGAGATGTATGTATATGGCTCTTGAACTTGAGATCATATTCATAGCATGTACTAATATCTTGTTCTA GACCTGAAACTATGGGTGCAGTCTGCGCAGTTGTGTATCTGATGGCGCTCATTATGTTCATTCCTTTTGCCTTCT ACAAGGATATCGTTGCAGCCACATCCGGAGGCGGAAACCGTGACGTTGTGGTTCCATCGCAACATATTGAGAATG GCCGATTTCTTCATCGATTTCCACATGGCAAGGTGAGTTCTGATTTCAATTGACTGAGGCATACCCAATTTAATG TGCAATTGAATAGCTCGCCTCCTACCTTTCTGGTCTTCTGTCTTTGCAATCCGTTGTGATTCTCGGAATCGGTGA TGATCTATTCGACATTCGCTGGAGACACAAAGTCCTCATCCCTGCTTTTTCCGCAATCCCCATGCTCATTGTGTA CTTTGTCGACTTTGGCGTCACTCAAGTCGTCGTGCCGGTGCCGCTGCAACCTTACCTGGGTGATGTTGTCGATCT TGGATGGCTGTACTACATGTATATGGCAGCGGTGGCAATCTTCTGTCCAAACGCGATCAACATGTTGGCAGGCAT TAATGGTATCGAGGTAGCTCAGTCACTGGTGATTGCGATCCAATTGCTATTCAATGATGCGATGTACCTTGCACC TATGACACCATACCCGCACCCTGCCACCGACTCGCACTTATTGTCGATGTACTTCCTGCTTCCATTCATCGGTGT GTCGGCAGCCCTTCTATGCCATAATTGGTATCCGTCGAAGGTGTTTGTGGGCGATACATACTGCTATTTCGCAGG AATGGTGTTTGCCGTGGTTGGTATCCTAGGGCATTTCAGCAAAACCCTGTTACTACTGTTCATTCCACAGATCTT CAATTTCCTTTACTCCACTCCCCAACTATTCCATCTCATTCCTTGTCCTCGTCATCGGTTACCAAAGTTCCACGC TTCCACTGGGTTGCTGGACGCTTCAGTCACGGAGTGGACGAGTCCTCCTTCGCACTTCATCGATACCGTACTACG CTTATTACACACCTTGAAACTGGTGCGAATCACCCAAGACGAGAATGGTCGAATCACTGAATCCAGTAATCTCAC CATCTTGAATCTTTGGCTGGTGTGGGTGGGTCCAATGCGAGAAGACCAACTGGCGTGGCACATGGTTGCAGTACA AACTGCCTGTGGGATGCTCGGTCTGTTCGTCAGACATCGCCTTGCATTGCTCGTGTTCCACCATGATAATAGGGA GTTCGGTTTTATCGCATAG |