© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g9762.t1 |
| Gene name | |
| Location | scaffold_76:5798..6849 |
| Strand | + |
| Gene length (bp) | 1051 |
| Transcript length (bp) | 864 |
| Coding sequence length (bp) | 864 |
| Protein length (aa) | 288 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01066 | CDP-OH_P_transf | CDP-alcohol phosphatidyltransferase | 7.9E-27 | 116 | 265 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016780 | phosphotransferase activity, for other substituted phosphate groups | Yes |
| GO:0008654 | phospholipid biosynthetic process | Yes |
| GO:0016020 | membrane | Yes |
| GO:0003824 | catalytic activity | No |
| GO:0006629 | lipid metabolic process | No |
| GO:0016772 | transferase activity, transferring phosphorus-containing groups | No |
| GO:0008150 | biological_process | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0005575 | cellular_component | No |
| GO:0016740 | transferase activity | No |
| GO:0090407 | organophosphate biosynthetic process | No |
| GO:0008152 | metabolic process | No |
| GO:0006793 | phosphorus metabolic process | No |
| GO:0006796 | phosphate-containing compound metabolic process | No |
| GO:0009058 | biosynthetic process | No |
| GO:0003674 | molecular_function | No |
| GO:0044249 | cellular biosynthetic process | No |
| GO:0044255 | cellular lipid metabolic process | No |
| GO:0019637 | organophosphate metabolic process | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0006644 | phospholipid metabolic process | No |
| GO:0044237 | cellular metabolic process | No |
| GO:0009987 | cellular process | No |
| GO:1901576 | organic substance biosynthetic process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0008610 | lipid biosynthetic process | No |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 131 | 153 | 22 |
| 2 | 182 | 204 | 22 |
| 3 | 257 | 279 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 46.87 | 24.79 | 68.96 |
| 5d_25C | Five days - 25 degrees Celsius | 41.04 | 21.08 | 61.00 |
| 7d_25C | Seven days - 25 degrees Celsius | 39.14 | 19.89 | 58.40 |
| 10d_25C | Ten days - 25 degrees Celsius | 31.28 | 15.01 | 47.56 |
| 7d_15C | Seven days - 15 degrees Celsius | 44.77 | 23.47 | 66.07 |
| 7d_30C | Seven days - 30 degrees Celsius | 45.20 | 23.70 | 66.69 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.708992 | no |
| 3d_25C | 7d_25C | 0.580652 | no |
| 3d_25C | 7d_15C | 0.910409 | no |
| 3d_25C | 7d_30C | 0.928477 | no |
| 3d_25C | 10d_25C | 0.149271 | no |
| 5d_25C | 7d_25C | 0.910127 | no |
| 5d_25C | 7d_15C | 0.815805 | no |
| 5d_25C | 7d_30C | 0.792243 | no |
| 5d_25C | 10d_25C | 0.380760 | no |
| 7d_25C | 7d_15C | 0.701374 | no |
| 7d_25C | 7d_30C | 0.672615 | no |
| 7d_25C | 10d_25C | 0.490965 | no |
| 7d_15C | 7d_30C | 0.983150 | no |
| 7d_15C | 10d_25C | 0.216254 | no |
| 7d_30C | 10d_25C | 0.196664 | no |
| Orthofinder run ID | 2 |
| Orthogroup | 7928 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g9762.t1 MIGSYAAQLSLRASRQGSQVLSKNARLLVQSNVFKTESLRRDGFRCISTSVQSTLNRSPRLKPRCLQTTLIAPSF FTQQRWSGSKSAKSPEQPEGSKKKPILSRIPLPTSHENIYTVPNILTFSRLLAAPVVGYLLVHNYHTAALSLFAY AGITDLVDGYIARRYNLQTVVGTIIDPMADKLLMTIGVACLAVNGSLPIWLAVIILGRDLGLAISAIYYRWISLP EPKTMARYWDFSLPSAEVKPTEISKINTALQLVLVGSAIALPVVPEAFVSAWHLSEAMTGFQ* |
| Coding | >Pro_DTO377G3_2|g9762.t1 ATGATTGGCTCATACGCAGCCCAGTTGTCCCTTCGGGCGAGCCGGCAGGGATCCCAAGTGCTGTCCAAAAATGCA CGTCTTCTTGTCCAGTCAAATGTGTTCAAAACTGAATCTCTTCGGAGAGATGGATTCCGATGTATATCTACATCA GTCCAGTCAACATTGAACCGATCACCTAGATTGAAACCTCGTTGTCTTCAGACAACCCTGATTGCACCATCATTC TTCACCCAGCAAAGATGGTCCGGGTCAAAATCAGCCAAATCTCCTGAACAACCCGAGGGATCCAAGAAAAAACCT ATTCTATCACGGATTCCCCTGCCAACCTCCCACGAGAATATCTACACTGTGCCCAACATTCTCACATTCTCCCGG CTGCTGGCCGCGCCCGTGGTCGGGTATCTCCTAGTCCACAACTACCACACAGCAGCGTTATCCCTGTTCGCCTAC GCGGGCATCACCGATCTCGTCGATGGGTACATCGCCCGGCGGTATAACCTCCAAACTGTGGTTGGAACGATCATT GATCCCATGGCCGATAAGCTGTTGATGACCATTGGTGTCGCGTGTCTGGCCGTGAATGGCTCTCTTCCTATCTGG CTCGCTGTGATCATCCTCGGTCGCGATCTGGGTCTGGCTATTTCGGCTATCTATTACCGTTGGATTTCGCTACCT GAGCCCAAGACCATGGCCCGGTACTGGGATTTCTCACTTCCCTCGGCGGAAGTCAAGCCCACTGAGATTTCGAAG ATCAATACTGCCCTACAGCTGGTGTTGGTGGGTAGTGCGATTGCGCTGCCTGTGGTCCCCGAGGCGTTTGTGAGT GCATGGCATTTGAGCGAGGCTATGACTGGATTCCAGTAA |
| Transcript | >Pro_DTO377G3_2|g9762.t1 ATGATTGGCTCATACGCAGCCCAGTTGTCCCTTCGGGCGAGCCGGCAGGGATCCCAAGTGCTGTCCAAAAATGCA CGTCTTCTTGTCCAGTCAAATGTGTTCAAAACTGAATCTCTTCGGAGAGATGGATTCCGATGTATATCTACATCA GTCCAGTCAACATTGAACCGATCACCTAGATTGAAACCTCGTTGTCTTCAGACAACCCTGATTGCACCATCATTC TTCACCCAGCAAAGATGGTCCGGGTCAAAATCAGCCAAATCTCCTGAACAACCCGAGGGATCCAAGAAAAAACCT ATTCTATCACGGATTCCCCTGCCAACCTCCCACGAGAATATCTACACTGTGCCCAACATTCTCACATTCTCCCGG CTGCTGGCCGCGCCCGTGGTCGGGTATCTCCTAGTCCACAACTACCACACAGCAGCGTTATCCCTGTTCGCCTAC GCGGGCATCACCGATCTCGTCGATGGGTACATCGCCCGGCGGTATAACCTCCAAACTGTGGTTGGAACGATCATT GATCCCATGGCCGATAAGCTGTTGATGACCATTGGTGTCGCGTGTCTGGCCGTGAATGGCTCTCTTCCTATCTGG CTCGCTGTGATCATCCTCGGTCGCGATCTGGGTCTGGCTATTTCGGCTATCTATTACCGTTGGATTTCGCTACCT GAGCCCAAGACCATGGCCCGGTACTGGGATTTCTCACTTCCCTCGGCGGAAGTCAAGCCCACTGAGATTTCGAAG ATCAATACTGCCCTACAGCTGGTGTTGGTGGGTAGTGCGATTGCGCTGCCTGTGGTCCCCGAGGCGTTTGTGAGT GCATGGCATTTGAGCGAGGCTATGACTGGATTCCAGTAA |
| Gene | >Pro_DTO377G3_2|g9762.t1 ATGATTGGCTCATACGCAGCCCAGTTGTCCCTTCGGGCGAGCCGGCAGGGATCCCAAGTGCTGTCCAAAAATGCA CGTCTTCTTGTCCAGTCAAATGTGTTCAAAACTGAATCTCTTCGGAGAGATGGATTCCGATGTATATCTACATCA GTCCAGTCAACATTGAACCGATCACCTAGGTATGGTCGTATGTGACTTCTTCATTTATATCATTCTAATTATTCA TCAGATTGAAACCTCGTTGTCTTCAGACAACCCTGATTGCACCATCATTCTTCACCCAGCAAAGATGGTCCGGGT CAAAATCAGCCAAATCTCCTGAACAGTAGGTCTACTCCAAACTATGTATTCAATATACAAATCGACATAAGCCAT TCGAACCAACGACTAACCTAGCTTAGACCCGAGGGATCCAAGAAAAAACCTATTCTATCACGGATTCCCCTGCCA ACCTCCCACGAGAATATCTACACTGTGCCCAACATTCTCACATTCTCCCGGCTGCTGGCCGCGCCCGTGGTCGGG TATCTCCTAGTCCACAACTACCACACAGCAGCGTTATCCCTGTTCGCCTACGCGGGCATCACCGATCTCGTCGAT GGGTACATCGCCCGGCGGTATAACCTCCAAACTGTGGTTGGAACGATCATTGATCCCATGGCCGATAAGCTGTTG ATGACCATTGGTGTCGCGTGTCTGGCCGTGAATGGCTCTCTTCCTAGTAAGTCACTCGTGTTGATCTTTGGTATC TGGACATGGACATGGATTGACGTATCGAACAGTCTGGCTCGCTGTGATCATCCTCGGTCGCGATCTGGGTCTGGC TATTTCGGCTATCTATTACCGTTGGATTTCGCTACCTGAGCCCAAGACCATGGCCCGGTACTGGGATTTCTCACT TCCCTCGGCGGAAGTCAAGCCCACTGAGATTTCGAAGATCAATACTGCCCTACAGCTGGTGTTGGTGGGTAGTGC GATTGCGCTGCCTGTGGTCCCCGAGGCGTTTGTGAGTGCATGGCATTTGAGCGAGGCTATGACTGGATTCCAGTA A |