© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g9757.t1 |
| Gene name | |
| Location | scaffold_75:4063..4543 |
| Strand | - |
| Gene length (bp) | 480 |
| Transcript length (bp) | 480 |
| Coding sequence length (bp) | 480 |
| Protein length (aa) | 160 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF13424 | TPR_12 | Tetratricopeptide repeat | 3.4E-08 | 35 | 103 |
| PF13374 | TPR_10 | Tetratricopeptide repeat | 3.0E-04 | 34 | 70 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 42 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 2.36 | 0.00 | 5.05 |
| 5d_25C | Five days - 25 degrees Celsius | 4.43 | 0.00 | 8.85 |
| 7d_25C | Seven days - 25 degrees Celsius | 3.82 | 0.06 | 7.58 |
| 10d_25C | Ten days - 25 degrees Celsius | 1.63 | 0.00 | 3.56 |
| 7d_15C | Seven days - 15 degrees Celsius | 4.40 | 0.31 | 8.50 |
| 7d_30C | Seven days - 30 degrees Celsius | 2.47 | 0.00 | 5.13 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.370667 | no |
| 3d_25C | 7d_25C | 0.511363 | no |
| 3d_25C | 7d_15C | 0.336306 | no |
| 3d_25C | 7d_30C | 0.964302 | no |
| 3d_25C | 10d_25C | 0.674180 | no |
| 5d_25C | 7d_25C | 0.858223 | no |
| 5d_25C | 7d_15C | 0.991266 | no |
| 5d_25C | 7d_30C | 0.371672 | no |
| 5d_25C | 10d_25C | 0.139016 | no |
| 7d_25C | 7d_15C | 0.853335 | no |
| 7d_25C | 7d_30C | 0.520498 | no |
| 7d_25C | 10d_25C | 0.210661 | no |
| 7d_15C | 7d_30C | 0.337492 | no |
| 7d_15C | 10d_25C | 0.124667 | no |
| 7d_30C | 10d_25C | 0.594770 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g9757.t1 MGELQKSEDILIEGIAAGKRSLSEDHLGVLMGCRELARTYSRQGRLDEAVKLIITTIEKMKIFQGSEHPDYATVM WSLGKVWEKKQEQAKAINAYQVVLEATEKRLTTEHPLYKIISDRIILLTEGAHSNDYKEATENGSVTNGGEDLRI KRLHNTQTW* |
| Coding | >Pro_DTO377G3_2|g9757.t1 ATGGGAGAGTTGCAAAAATCCGAGGATATTCTCATCGAGGGCATCGCTGCTGGTAAACGAAGTCTTAGTGAAGAT CACCTTGGGGTTTTGATGGGCTGCAGGGAACTTGCTCGAACTTATTCTCGTCAGGGTCGCCTGGACGAAGCTGTG AAACTGATTATCACGACCATCGAGAAGATGAAGATTTTTCAAGGTAGCGAGCACCCCGACTACGCTACCGTAATG TGGAGTTTGGGCAAGGTATGGGAGAAAAAACAGGAGCAAGCCAAGGCAATCAATGCCTACCAAGTCGTGTTAGAA GCGACAGAAAAGAGGTTAACAACAGAGCATCCGCTCTACAAGATTATCTCGGATCGCATCATTCTCCTAACAGAG GGAGCTCACAGCAATGACTACAAAGAGGCTACAGAAAATGGCTCTGTCACAAATGGCGGTGAGGATCTGCGAATC AAACGTTTGCATAATACGCAGACATGGTAG |
| Transcript | >Pro_DTO377G3_2|g9757.t1 ATGGGAGAGTTGCAAAAATCCGAGGATATTCTCATCGAGGGCATCGCTGCTGGTAAACGAAGTCTTAGTGAAGAT CACCTTGGGGTTTTGATGGGCTGCAGGGAACTTGCTCGAACTTATTCTCGTCAGGGTCGCCTGGACGAAGCTGTG AAACTGATTATCACGACCATCGAGAAGATGAAGATTTTTCAAGGTAGCGAGCACCCCGACTACGCTACCGTAATG TGGAGTTTGGGCAAGGTATGGGAGAAAAAACAGGAGCAAGCCAAGGCAATCAATGCCTACCAAGTCGTGTTAGAA GCGACAGAAAAGAGGTTAACAACAGAGCATCCGCTCTACAAGATTATCTCGGATCGCATCATTCTCCTAACAGAG GGAGCTCACAGCAATGACTACAAAGAGGCTACAGAAAATGGCTCTGTCACAAATGGCGGTGAGGATCTGCGAATC AAACGTTTGCATAATACGCAGACATGGTAG |
| Gene | >Pro_DTO377G3_2|g9757.t1 ATGGGAGAGTTGCAAAAATCCGAGGATATTCTCATCGAGGGCATCGCTGCTGGTAAACGAAGTCTTAGTGAAGAT CACCTTGGGGTTTTGATGGGCTGCAGGGAACTTGCTCGAACTTATTCTCGTCAGGGTCGCCTGGACGAAGCTGTG AAACTGATTATCACGACCATCGAGAAGATGAAGATTTTTCAAGGTAGCGAGCACCCCGACTACGCTACCGTAATG TGGAGTTTGGGCAAGGTATGGGAGAAAAAACAGGAGCAAGCCAAGGCAATCAATGCCTACCAAGTCGTGTTAGAA GCGACAGAAAAGAGGTTAACAACAGAGCATCCGCTCTACAAGATTATCTCGGATCGCATCATTCTCCTAACAGAG GGAGCTCACAGCAATGACTACAAAGAGGCTACAGAAAATGGCTCTGTCACAAATGGCGGTGAGGATCTGCGAATC AAACGTTTGCATAATACGCAGACATGGTAG |