© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g975.t1 |
| Gene name | |
| Location | scaffold_01:2584233..2585767 |
| Strand | - |
| Gene length (bp) | 1534 |
| Transcript length (bp) | 1260 |
| Coding sequence length (bp) | 1260 |
| Protein length (aa) | 420 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00108 | Thiolase_N | Thiolase, N-terminal domain | 3.3E-63 | 33 | 288 |
| PF02803 | Thiolase_C | Thiolase, C-terminal domain | 1.2E-42 | 297 | 415 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016747 | acyltransferase activity, transferring groups other than amino-acyl groups | Yes |
| GO:0016746 | acyltransferase activity | No |
| GO:0016740 | transferase activity | No |
| GO:0003674 | molecular_function | No |
| GO:0003824 | catalytic activity | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 47 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 12.61 | 5.32 | 19.91 |
| 5d_25C | Five days - 25 degrees Celsius | 7.52 | 2.65 | 12.39 |
| 7d_25C | Seven days - 25 degrees Celsius | 6.88 | 2.18 | 11.59 |
| 10d_25C | Ten days - 25 degrees Celsius | 4.97 | 1.36 | 8.58 |
| 7d_15C | Seven days - 15 degrees Celsius | 9.05 | 3.22 | 14.87 |
| 7d_30C | Seven days - 30 degrees Celsius | 11.87 | 4.84 | 18.91 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.142038 | no |
| 3d_25C | 7d_25C | 0.077844 | no |
| 3d_25C | 7d_15C | 0.391695 | no |
| 3d_25C | 7d_30C | 0.904079 | no |
| 3d_25C | 10d_25C | 0.009770 | yes |
| 5d_25C | 7d_25C | 0.872254 | no |
| 5d_25C | 7d_15C | 0.691597 | no |
| 5d_25C | 7d_30C | 0.199428 | no |
| 5d_25C | 10d_25C | 0.321934 | no |
| 7d_25C | 7d_15C | 0.531421 | no |
| 7d_25C | 7d_30C | 0.115777 | no |
| 7d_25C | 10d_25C | 0.472425 | no |
| 7d_15C | 7d_30C | 0.500239 | no |
| 7d_15C | 10d_25C | 0.125400 | no |
| 7d_30C | 10d_25C | 0.015558 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g975.t1 MSSPQQRLSSVANQLAAPGSARQKLLAKNPDDVVITYLARTPLTKARKGGLKDTSVDDLLISLLTTVREKSNLDP NLVEDVCVGNVLCPGSAYVARSAVLAAGYPVTAAASIANRFCSSGLLAVQNIANQITAGSIDVGVAVGAESMSKN ADGGAPEMSERIAKHPIASQNSLPMGQTSENVANQFNITREQHDRFAANSFQKAERAQKAGWLDDEIVPVKTQIK DPKTGEVKDIVVDRDDGIRYGTTPESLGKVRAAFPQWAPSATTGGNASQITDGAAALVLMKRSRAQELGQPIVAK FCGATVSGLEPRIMGIGPSLAIPKILNKFNLSKDDIDIFEINEAFASMGVYCVNKLGLDESKVNPRGGAIAFGHP LGATGARQVVTALSELRRQDKRIAVTSMCVGTGMGMAGIFVSEH* |
| Coding | >Pro_DTO377G3_2|g975.t1 ATGTCTTCACCGCAACAACGTTTAAGCTCCGTCGCCAACCAGCTGGCAGCTCCTGGCTCAGCCCGCCAGAAGCTT CTGGCAAAGAACCCAGATGATGTGGTTATCACTTACCTAGCCAGGACGCCGCTCACCAAGGCCCGCAAAGGTGGA TTGAAAGATACCTCCGTAGATGACCTCCTCATTTCACTCCTCACGACCGTCCGCGAGAAATCCAATCTGGACCCC AACCTCGTTGAAGATGTCTGCGTTGGCAACGTCCTCTGCCCCGGTTCGGCATATGTCGCCCGCTCCGCGGTGCTG GCAGCAGGCTATCCCGTAACAGCAGCGGCCTCCATCGCCAACCGATTTTGCTCCTCGGGTCTTCTAGCCGTGCAA AACATCGCCAACCAAATCACCGCCGGATCCATCGATGTCGGAGTGGCCGTTGGAGCCGAGAGCATGAGCAAGAAC GCCGACGGCGGCGCCCCTGAAATGTCCGAGCGCATCGCCAAGCACCCGATCGCATCCCAGAACTCCCTACCCATG GGCCAGACCTCGGAGAATGTAGCTAACCAGTTCAATATCACGCGCGAGCAGCACGACAGGTTCGCTGCCAACAGT TTTCAGAAGGCTGAGCGCGCCCAGAAGGCCGGATGGCTTGATGACGAGATTGTACCCGTCAAGACTCAAATTAAG GATCCCAAGACCGGCGAGGTGAAGGATATCGTCGTTGATCGCGACGACGGCATCCGCTATGGCACGACCCCTGAG TCCCTCGGCAAGGTCCGCGCTGCCTTCCCGCAGTGGGCCCCTAGTGCCACCACCGGTGGTAACGCCAGTCAGATT ACCGACGGTGCTGCTGCGCTGGTTCTCATGAAACGCTCGCGCGCCCAGGAGCTCGGTCAGCCGATTGTTGCCAAG TTCTGTGGTGCTACTGTTTCTGGTCTGGAGCCTAGAATTATGGGGATTGGCCCATCCCTTGCCATCCCTAAGATT CTGAATAAGTTCAACCTGAGCAAGGATGACATTGATATTTTTGAGATTAACGAGGCCTTTGCCTCAATGGGTGTT TACTGTGTTAACAAGCTAGGCTTGGATGAATCCAAGGTGAACCCGCGTGGTGGTGCTATTGCTTTTGGTCACCCT CTGGGCGCCACTGGTGCACGTCAGGTCGTCACTGCTCTGTCTGAGCTGCGTCGACAGGATAAGCGGATTGCTGTG ACTTCGATGTGTGTGGGCACTGGCATGGGGATGGCAGGTATCTTTGTTTCTGAGCATTAA |
| Transcript | >Pro_DTO377G3_2|g975.t1 ATGTCTTCACCGCAACAACGTTTAAGCTCCGTCGCCAACCAGCTGGCAGCTCCTGGCTCAGCCCGCCAGAAGCTT CTGGCAAAGAACCCAGATGATGTGGTTATCACTTACCTAGCCAGGACGCCGCTCACCAAGGCCCGCAAAGGTGGA TTGAAAGATACCTCCGTAGATGACCTCCTCATTTCACTCCTCACGACCGTCCGCGAGAAATCCAATCTGGACCCC AACCTCGTTGAAGATGTCTGCGTTGGCAACGTCCTCTGCCCCGGTTCGGCATATGTCGCCCGCTCCGCGGTGCTG GCAGCAGGCTATCCCGTAACAGCAGCGGCCTCCATCGCCAACCGATTTTGCTCCTCGGGTCTTCTAGCCGTGCAA AACATCGCCAACCAAATCACCGCCGGATCCATCGATGTCGGAGTGGCCGTTGGAGCCGAGAGCATGAGCAAGAAC GCCGACGGCGGCGCCCCTGAAATGTCCGAGCGCATCGCCAAGCACCCGATCGCATCCCAGAACTCCCTACCCATG GGCCAGACCTCGGAGAATGTAGCTAACCAGTTCAATATCACGCGCGAGCAGCACGACAGGTTCGCTGCCAACAGT TTTCAGAAGGCTGAGCGCGCCCAGAAGGCCGGATGGCTTGATGACGAGATTGTACCCGTCAAGACTCAAATTAAG GATCCCAAGACCGGCGAGGTGAAGGATATCGTCGTTGATCGCGACGACGGCATCCGCTATGGCACGACCCCTGAG TCCCTCGGCAAGGTCCGCGCTGCCTTCCCGCAGTGGGCCCCTAGTGCCACCACCGGTGGTAACGCCAGTCAGATT ACCGACGGTGCTGCTGCGCTGGTTCTCATGAAACGCTCGCGCGCCCAGGAGCTCGGTCAGCCGATTGTTGCCAAG TTCTGTGGTGCTACTGTTTCTGGTCTGGAGCCTAGAATTATGGGGATTGGCCCATCCCTTGCCATCCCTAAGATT CTGAATAAGTTCAACCTGAGCAAGGATGACATTGATATTTTTGAGATTAACGAGGCCTTTGCCTCAATGGGTGTT TACTGTGTTAACAAGCTAGGCTTGGATGAATCCAAGGTGAACCCGCGTGGTGGTGCTATTGCTTTTGGTCACCCT CTGGGCGCCACTGGTGCACGTCAGGTCGTCACTGCTCTGTCTGAGCTGCGTCGACAGGATAAGCGGATTGCTGTG ACTTCGATGTGTGTGGGCACTGGCATGGGGATGGCAGGTATCTTTGTTTCTGAGCATTAA |
| Gene | >Pro_DTO377G3_2|g975.t1 ATGTCTTCACCGCAACAACGTTTAAGCTCCGTCGCCAACCAGCTGGCAGCTCCTGGCTCAGCCCGCCAGAAGCTT CTGGCAAAGAACCCAGATGATGTGGTATGTCACTGATTGCAGCTGCAACTTCATTGCCATAATTAATCAATAATC GGCAGGTTATCACTTACCTAGCCAGGACGCCGCTCACCAAGGCCCGCAAAGGTGGATTGAAAGATACCTCCGTAG ATGACCTCCTCATTTCACTCCTCACGGTACTTCTTCCTCCGTGATTAGAGGCGAAAATTGCAGTAATTAATACAT CAAGAAGACCGTCCGCGAGAAATCCAATCTGGACCCCAACCTCGTTGAAGATGTCTGCGTTGGCAACGTCCTCTG CCCCGGTTCGGCATATGTCGCCCGCTCCGCGGTGCTGGCAGCAGGCTATCCCGTAACAGCAGCGGCCTCCATCGC CAACCGATTTTGCTCCTCGGGTCTTCTAGCCGTGCAAAACATCGCCAACCAAATCACCGCCGGATCCATCGATGT CGGAGTGGCCGTTGGAGCCGAGAGCATGAGCAAGAACGCCGACGGCGGCGCCCCTGAAATGTCCGAGCGCATCGC CAAGCACCCGATCGCATCCCAGAACTCCCTACCCATGGGCCAGACCTCGGAGAATGTAGCTAACCAGTTCAATAT CACGCGCGAGCAGCACGACAGGTTCGCTGCCAACAGTTTTCAGAAGGCTGAGCGCGCCCAGAAGGCCGGATGGCT TGATGACGAGATTGTACCCGTCAAGACTCAAATTAAGGATCCCAAGACCGGCGAGGTGAAGGATATCGTCGTTGA TCGCGACGACGGCATCCGCTATGGCACGACCCCTGAGTCCCTCGGCAAGGTCCGCGCTGCCTTCCCGCAGTGGGC CCCTAGTGCCACCACCGGTGGTAACGCCAGTCAGATTACCGACGGTGCTGCTGCGCTGGTTCTCATGAAACGCTC GCGCGCCCAGGAGCTCGGTCAGCCGATTGTTGCCAAGTTCTGTGGTGCTACTGTTTCTGGTCTGGAGCCTAGAAT TATGGGGATTGGCCCATCCCTTGCCATCCCTAAGATTCTGAATAAGTTCAACCTGAGCAAGGATGACATTGATAT TTTTGAGATTAACGAGGCCTTTGCCTCAATGGTAAGTTTATCATGTGACTATACATTAAGCAAGACTAACACTCG TTATTACAGGGTGTTTACTGTGTTAACAAGCTAGGCTTGGATGAATCCAAGGTGAACCCGCGTGGTGGTGCTATG TAAGTGAGCTCCGACCAGATTTGATGGACGCCGTGCTGATGTCTCAAAGTGCTTTTGGTCACCCTCTGGGCGCCA CTGGTGCACGTCAGGTCGTCACTGCTCTGTCTGAGCTGCGTCGACAGGATAAGCGGATTGCTGTGACTTCGATGT GTGTGGGCACTGTAAGTTACCTTCGATTATCACGACCTCGAGTATTGAAATAACTAATTGTTTTGAATAGGGCAT GGGGATGGCAGGTATCTTTGTTTCTGAGCATTAA |