© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Pro_DTO377G3_2|g9742.t1 |
| Gene name | |
| Location | scaffold_71:7925..9647 |
| Strand | - |
| Gene length (bp) | 1722 |
| Transcript length (bp) | 1722 |
| Coding sequence length (bp) | 1722 |
| Protein length (aa) | 574 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00561 | Abhydrolase_1 | alpha/beta hydrolase fold | 2.5E-13 | 75 | 260 |
| PF08386 | Abhydrolase_4 | TAP-like protein | 4.9E-13 | 446 | 521 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 24 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 0.78 | 0.00 | 1.56 |
| 5d_25C | Five days - 25 degrees Celsius | 1.91 | 0.39 | 3.42 |
| 7d_25C | Seven days - 25 degrees Celsius | 2.05 | 0.46 | 3.64 |
| 10d_25C | Ten days - 25 degrees Celsius | 2.91 | 0.78 | 5.04 |
| 7d_15C | Seven days - 15 degrees Celsius | 2.03 | 0.31 | 3.75 |
| 7d_30C | Seven days - 30 degrees Celsius | 2.62 | 0.66 | 4.58 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.089205 | no |
| 3d_25C | 7d_25C | 0.063693 | no |
| 3d_25C | 7d_15C | 0.074116 | no |
| 3d_25C | 7d_30C | 0.021163 | yes |
| 3d_25C | 10d_25C | 0.013211 | yes |
| 5d_25C | 7d_25C | 0.913723 | no |
| 5d_25C | 7d_15C | 0.930109 | no |
| 5d_25C | 7d_30C | 0.525373 | no |
| 5d_25C | 10d_25C | 0.371995 | no |
| 7d_25C | 7d_15C | 0.987275 | no |
| 7d_25C | 7d_30C | 0.646898 | no |
| 7d_25C | 10d_25C | 0.484970 | no |
| 7d_15C | 7d_30C | 0.647383 | no |
| 7d_15C | 10d_25C | 0.492853 | no |
| 7d_30C | 10d_25C | 0.863124 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g9742.t1 MSSLSSVKYFLLAGCLSASTALASLQWSPCPANPALDCSTLRVPLEYAEPQSGMSASIPLARYNATVEVSQRKGS LLTNPGGPGASGVSFVVNGAGEGISNITGGFYDIIGWDPRGVGSAQPVLQCFATAGEEYEASQVLPAAPDVAYGQ FRNQSYTPFYNAAMQEFDSMTAQLAAACASYNSTASYTSSAAYVVRDMGAIVDALDGKDARLNYWGLSYGTIFGV EFIQTYPERVGRIVLDGVFDATANAETYVAQLPNDQLSVRDAINDLVSFCEQAGPAGCALSTPPANVTADLTTRL ANLQDSLYEHPIPVSQGFSITVGIFSAFMWSFSRVPTTWPLISSVVSALEQGDATPIVSILNAAAASPPANSKAP ATGSLAEWPLQCVDNAPSSGISLADVASLVLNVSLREDTPWLNADVTPLSFCRHFPDTRARIPNLGASKVRDANS ILTEQNTPVLIVNGEHDPVTPLASAERLQSQLATASRLVTRRGPGHTTVSIASLGLTEAIRAYFIGNTLPTSAVH DLSQVVFSSAINAGTLTPAPVFNGTYSEAELTLLNSTYNILLAFLSLA* |
| Coding | >Pro_DTO377G3_2|g9742.t1 ATGTCCTCTCTCTCTTCTGTTAAGTACTTCCTTCTTGCTGGATGCCTGTCGGCATCTACGGCTCTTGCCAGCCTT CAATGGTCACCCTGTCCTGCAAATCCAGCGTTGGATTGCTCAACCCTCCGAGTGCCGCTTGAGTATGCGGAGCCA CAGAGCGGGATGTCAGCTTCTATTCCGCTTGCCCGATACAACGCCACGGTAGAGGTATCCCAGCGCAAAGGCTCA CTTCTCACGAATCCTGGGGGTCCTGGTGCGTCTGGTGTCTCCTTCGTCGTGAACGGCGCCGGGGAAGGAATATCG AACATCACCGGGGGGTTTTACGATATAATTGGATGGGACCCGCGCGGTGTGGGTTCCGCTCAACCCGTCTTGCAA TGTTTTGCTACCGCCGGAGAAGAGTATGAAGCGTCCCAGGTGCTTCCAGCTGCGCCTGACGTGGCGTACGGCCAG TTCAGAAACCAATCCTACACGCCCTTTTACAACGCTGCGATGCAGGAGTTTGACAGCATGACCGCCCAGCTTGCT GCCGCATGTGCATCTTACAATTCGACAGCTTCGTATACTTCTAGCGCGGCCTACGTTGTTCGTGACATGGGGGCT ATTGTCGATGCATTGGACGGCAAAGATGCCCGTTTGAATTACTGGGGTCTCTCCTACGGGACCATTTTTGGGGTA GAATTTATTCAGACCTATCCGGAGAGGGTCGGGAGGATTGTCCTGGACGGCGTTTTTGATGCTACTGCCAATGCT GAGACCTATGTCGCCCAGCTTCCCAATGACCAACTCTCCGTGCGAGATGCTATCAACGATCTGGTGTCATTTTGC GAACAAGCTGGTCCAGCTGGCTGTGCTCTGAGTACTCCTCCTGCAAATGTAACTGCCGACCTGACCACTCGACTT GCTAATTTACAAGATTCCCTCTACGAACATCCCATTCCGGTCTCTCAAGGGTTCTCCATCACCGTTGGGATCTTC AGCGCATTCATGTGGTCCTTTTCCCGAGTTCCGACTACTTGGCCCCTTATCTCCTCAGTTGTGAGCGCTCTTGAG CAAGGAGATGCGACTCCAATAGTGTCCATTCTTAATGCAGCTGCCGCCAGTCCGCCAGCCAATTCCAAAGCTCCA GCCACTGGGTCTCTAGCTGAATGGCCCCTGCAGTGTGTGGATAATGCGCCGTCCAGTGGCATCTCCTTGGCGGAC GTTGCTTCCCTAGTACTCAATGTCTCTCTCCGCGAGGATACCCCTTGGCTGAATGCTGACGTGACTCCCCTATCC TTCTGTCGCCACTTTCCGGACACCCGCGCAAGAATCCCGAACTTGGGAGCCTCGAAAGTCCGCGATGCAAACTCC ATCCTCACTGAGCAAAATACCCCGGTGCTGATTGTCAATGGCGAACATGACCCCGTGACTCCGTTGGCCTCTGCA GAGCGTTTGCAGAGTCAGCTTGCTACCGCGTCCCGGTTGGTGACCAGACGAGGCCCAGGTCATACAACAGTCAGC ATTGCGTCGTTGGGGCTGACAGAGGCCATCCGTGCATACTTTATTGGCAATACCCTTCCAACAAGCGCCGTTCAC GACCTCAGCCAGGTGGTATTCTCCTCCGCAATCAACGCCGGGACATTAACCCCCGCTCCAGTATTCAATGGTACA TACTCCGAGGCAGAGCTGACTCTACTGAACTCCACATACAATATTTTGTTAGCATTCCTCAGCTTAGCATAA |
| Transcript | >Pro_DTO377G3_2|g9742.t1 ATGTCCTCTCTCTCTTCTGTTAAGTACTTCCTTCTTGCTGGATGCCTGTCGGCATCTACGGCTCTTGCCAGCCTT CAATGGTCACCCTGTCCTGCAAATCCAGCGTTGGATTGCTCAACCCTCCGAGTGCCGCTTGAGTATGCGGAGCCA CAGAGCGGGATGTCAGCTTCTATTCCGCTTGCCCGATACAACGCCACGGTAGAGGTATCCCAGCGCAAAGGCTCA CTTCTCACGAATCCTGGGGGTCCTGGTGCGTCTGGTGTCTCCTTCGTCGTGAACGGCGCCGGGGAAGGAATATCG AACATCACCGGGGGGTTTTACGATATAATTGGATGGGACCCGCGCGGTGTGGGTTCCGCTCAACCCGTCTTGCAA TGTTTTGCTACCGCCGGAGAAGAGTATGAAGCGTCCCAGGTGCTTCCAGCTGCGCCTGACGTGGCGTACGGCCAG TTCAGAAACCAATCCTACACGCCCTTTTACAACGCTGCGATGCAGGAGTTTGACAGCATGACCGCCCAGCTTGCT GCCGCATGTGCATCTTACAATTCGACAGCTTCGTATACTTCTAGCGCGGCCTACGTTGTTCGTGACATGGGGGCT ATTGTCGATGCATTGGACGGCAAAGATGCCCGTTTGAATTACTGGGGTCTCTCCTACGGGACCATTTTTGGGGTA GAATTTATTCAGACCTATCCGGAGAGGGTCGGGAGGATTGTCCTGGACGGCGTTTTTGATGCTACTGCCAATGCT GAGACCTATGTCGCCCAGCTTCCCAATGACCAACTCTCCGTGCGAGATGCTATCAACGATCTGGTGTCATTTTGC GAACAAGCTGGTCCAGCTGGCTGTGCTCTGAGTACTCCTCCTGCAAATGTAACTGCCGACCTGACCACTCGACTT GCTAATTTACAAGATTCCCTCTACGAACATCCCATTCCGGTCTCTCAAGGGTTCTCCATCACCGTTGGGATCTTC AGCGCATTCATGTGGTCCTTTTCCCGAGTTCCGACTACTTGGCCCCTTATCTCCTCAGTTGTGAGCGCTCTTGAG CAAGGAGATGCGACTCCAATAGTGTCCATTCTTAATGCAGCTGCCGCCAGTCCGCCAGCCAATTCCAAAGCTCCA GCCACTGGGTCTCTAGCTGAATGGCCCCTGCAGTGTGTGGATAATGCGCCGTCCAGTGGCATCTCCTTGGCGGAC GTTGCTTCCCTAGTACTCAATGTCTCTCTCCGCGAGGATACCCCTTGGCTGAATGCTGACGTGACTCCCCTATCC TTCTGTCGCCACTTTCCGGACACCCGCGCAAGAATCCCGAACTTGGGAGCCTCGAAAGTCCGCGATGCAAACTCC ATCCTCACTGAGCAAAATACCCCGGTGCTGATTGTCAATGGCGAACATGACCCCGTGACTCCGTTGGCCTCTGCA GAGCGTTTGCAGAGTCAGCTTGCTACCGCGTCCCGGTTGGTGACCAGACGAGGCCCAGGTCATACAACAGTCAGC ATTGCGTCGTTGGGGCTGACAGAGGCCATCCGTGCATACTTTATTGGCAATACCCTTCCAACAAGCGCCGTTCAC GACCTCAGCCAGGTGGTATTCTCCTCCGCAATCAACGCCGGGACATTAACCCCCGCTCCAGTATTCAATGGTACA TACTCCGAGGCAGAGCTGACTCTACTGAACTCCACATACAATATTTTGTTAGCATTCCTCAGCTTAGCATAA |
| Gene | >Pro_DTO377G3_2|g9742.t1 ATGTCCTCTCTCTCTTCTGTTAAGTACTTCCTTCTTGCTGGATGCCTGTCGGCATCTACGGCTCTTGCCAGCCTT CAATGGTCACCCTGTCCTGCAAATCCAGCGTTGGATTGCTCAACCCTCCGAGTGCCGCTTGAGTATGCGGAGCCA CAGAGCGGGATGTCAGCTTCTATTCCGCTTGCCCGATACAACGCCACGGTAGAGGTATCCCAGCGCAAAGGCTCA CTTCTCACGAATCCTGGGGGTCCTGGTGCGTCTGGTGTCTCCTTCGTCGTGAACGGCGCCGGGGAAGGAATATCG AACATCACCGGGGGGTTTTACGATATAATTGGATGGGACCCGCGCGGTGTGGGTTCCGCTCAACCCGTCTTGCAA TGTTTTGCTACCGCCGGAGAAGAGTATGAAGCGTCCCAGGTGCTTCCAGCTGCGCCTGACGTGGCGTACGGCCAG TTCAGAAACCAATCCTACACGCCCTTTTACAACGCTGCGATGCAGGAGTTTGACAGCATGACCGCCCAGCTTGCT GCCGCATGTGCATCTTACAATTCGACAGCTTCGTATACTTCTAGCGCGGCCTACGTTGTTCGTGACATGGGGGCT ATTGTCGATGCATTGGACGGCAAAGATGCCCGTTTGAATTACTGGGGTCTCTCCTACGGGACCATTTTTGGGGTA GAATTTATTCAGACCTATCCGGAGAGGGTCGGGAGGATTGTCCTGGACGGCGTTTTTGATGCTACTGCCAATGCT GAGACCTATGTCGCCCAGCTTCCCAATGACCAACTCTCCGTGCGAGATGCTATCAACGATCTGGTGTCATTTTGC GAACAAGCTGGTCCAGCTGGCTGTGCTCTGAGTACTCCTCCTGCAAATGTAACTGCCGACCTGACCACTCGACTT GCTAATTTACAAGATTCCCTCTACGAACATCCCATTCCGGTCTCTCAAGGGTTCTCCATCACCGTTGGGATCTTC AGCGCATTCATGTGGTCCTTTTCCCGAGTTCCGACTACTTGGCCCCTTATCTCCTCAGTTGTGAGCGCTCTTGAG CAAGGAGATGCGACTCCAATAGTGTCCATTCTTAATGCAGCTGCCGCCAGTCCGCCAGCCAATTCCAAAGCTCCA GCCACTGGGTCTCTAGCTGAATGGCCCCTGCAGTGTGTGGATAATGCGCCGTCCAGTGGCATCTCCTTGGCGGAC GTTGCTTCCCTAGTACTCAATGTCTCTCTCCGCGAGGATACCCCTTGGCTGAATGCTGACGTGACTCCCCTATCC TTCTGTCGCCACTTTCCGGACACCCGCGCAAGAATCCCGAACTTGGGAGCCTCGAAAGTCCGCGATGCAAACTCC ATCCTCACTGAGCAAAATACCCCGGTGCTGATTGTCAATGGCGAACATGACCCCGTGACTCCGTTGGCCTCTGCA GAGCGTTTGCAGAGTCAGCTTGCTACCGCGTCCCGGTTGGTGACCAGACGAGGCCCAGGTCATACAACAGTCAGC ATTGCGTCGTTGGGGCTGACAGAGGCCATCCGTGCATACTTTATTGGCAATACCCTTCCAACAAGCGCCGTTCAC GACCTCAGCCAGGTGGTATTCTCCTCCGCAATCAACGCCGGGACATTAACCCCCGCTCCAGTATTCAATGGTACA TACTCCGAGGCAGAGCTGACTCTACTGAACTCCACATACAATATTTTGTTAGCATTCCTCAGCTTAGCATAA |