© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g974.t1 |
| Gene name | |
| Location | scaffold_01:2582413..2584027 |
| Strand | + |
| Gene length (bp) | 1614 |
| Transcript length (bp) | 1614 |
| Coding sequence length (bp) | 1614 |
| Protein length (aa) | 538 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF07930 | DAP_B | D-aminopeptidase, domain B | 4.2E-75 | 353 | 533 |
| PF00144 | Beta-lactamase | Beta-lactamase | 2.6E-43 | 17 | 330 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0004177 | aminopeptidase activity | Yes |
| GO:0008238 | exopeptidase activity | No |
| GO:0140096 | catalytic activity, acting on a protein | No |
| GO:0008233 | peptidase activity | No |
| GO:0003674 | molecular_function | No |
| GO:0003824 | catalytic activity | No |
| GO:0016787 | hydrolase activity | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 36 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 106.55 | 64.97 | 148.12 |
| 5d_25C | Five days - 25 degrees Celsius | 44.80 | 26.59 | 63.02 |
| 7d_25C | Seven days - 25 degrees Celsius | 47.41 | 27.32 | 67.49 |
| 10d_25C | Ten days - 25 degrees Celsius | 14.52 | 6.88 | 22.16 |
| 7d_15C | Seven days - 15 degrees Celsius | 55.65 | 32.09 | 79.21 |
| 7d_30C | Seven days - 30 degrees Celsius | 18.98 | 9.82 | 28.13 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.000700 | yes |
| 3d_25C | 7d_25C | 0.000700 | yes |
| 3d_25C | 7d_15C | 0.005235 | yes |
| 3d_25C | 7d_30C | 0.000700 | yes |
| 3d_25C | 10d_25C | 0.000700 | yes |
| 5d_25C | 7d_25C | 0.868751 | no |
| 5d_25C | 7d_15C | 0.409984 | no |
| 5d_25C | 7d_30C | 0.000700 | yes |
| 5d_25C | 10d_25C | 0.000700 | yes |
| 7d_25C | 7d_15C | 0.581870 | no |
| 7d_25C | 7d_30C | 0.000700 | yes |
| 7d_25C | 10d_25C | 0.000700 | yes |
| 7d_15C | 7d_30C | 0.000700 | yes |
| 7d_15C | 10d_25C | 0.000700 | yes |
| 7d_30C | 10d_25C | 0.407882 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g974.t1 MAIDEKVQAVLNKTVLRYRGPGGAIAVVKDGEVIGQRVWGFADLDQRIPMTAQTQIPICSITKQFVCALLIDLER NPTPTLAAKGDVRKQLSDHLAEILSPELTSDGELTIDHLCDMQSGMRDYWAMTTLWGSKPDDEFLIARDCGPLLA RTKSFMFQPGTEYSYCNVNFHVLARIIERATGESLAKLLEERILRPAGMSTAFLCPNTAHHPPPCVGYEGDEQHG FTAAVNRMEWSGDAGLVASLADMIEYEKYLDRCYADPQSWYHTAIAAPKFKDGTPAKYRYGLDHADIAGVNTIGH GGALRGYRLHRRHAPRERLSVVVMSNSDFGAFGPNMEILHELLGIPKPVASTVQPAADWVGAFLDQDTQLSIVIT KGARDGEVAIRYDGSAEPIKLSAPNHGKSDSMVATIDGDFLSIHRVVDNRILSARRIVPKESILKGTSFQGVYHC AEIESTFHCIGEDGMLYGAFDGYLGQGIATPMKYLGDDVWVLTCPRGLDAPAPGDWTVVFSRDEHDAIQGFTIGC WLARKVDYVKRA* |
| Coding | >Pro_DTO377G3_2|g974.t1 ATGGCAATTGACGAAAAGGTTCAAGCGGTCTTGAACAAAACGGTCCTGCGTTATCGCGGCCCAGGAGGTGCCATC GCCGTCGTCAAAGATGGCGAGGTCATCGGCCAGCGTGTCTGGGGATTCGCCGATCTCGACCAGCGAATTCCCATG ACAGCTCAAACGCAAATCCCCATCTGTTCAATTACAAAACAATTTGTGTGTGCGTTGTTGATCGACCTGGAGCGC AATCCAACCCCAACACTAGCTGCAAAGGGCGATGTCCGGAAGCAGCTCTCAGATCACCTCGCCGAGATACTAAGC CCGGAGCTCACTTCTGACGGTGAACTGACAATTGATCACTTATGCGACATGCAATCCGGCATGCGCGACTACTGG GCTATGACCACACTATGGGGGTCCAAACCCGACGATGAGTTCCTGATAGCTAGAGACTGCGGCCCACTGCTTGCC CGAACCAAGTCATTCATGTTCCAGCCGGGAACGGAGTATTCCTACTGCAATGTCAATTTCCACGTCCTTGCCCGA ATCATCGAGCGAGCTACGGGCGAGTCTCTTGCCAAATTGCTCGAAGAGCGGATACTCCGACCGGCTGGTATGAGC ACGGCATTCCTTTGCCCCAACACCGCACATCACCCACCGCCCTGTGTCGGGTATGAGGGCGACGAGCAGCACGGC TTCACGGCCGCTGTCAATAGGATGGAATGGTCCGGTGATGCTGGACTAGTGGCTTCACTCGCTGATATGATCGAG TACGAGAAGTATCTCGATCGCTGTTACGCTGATCCGCAGAGCTGGTACCACACCGCGATCGCTGCTCCGAAGTTT AAAGATGGCACTCCTGCAAAATACCGTTATGGGCTAGATCACGCTGACATCGCTGGCGTGAACACCATTGGACAC GGTGGAGCGTTGCGAGGGTATCGACTGCATCGGCGACACGCTCCACGCGAGCGTTTGTCCGTCGTTGTTATGTCT AACAGTGACTTCGGTGCATTCGGCCCCAATATGGAGATCCTCCACGAGCTCTTGGGAATACCTAAGCCTGTGGCA TCAACCGTCCAGCCGGCCGCGGACTGGGTCGGCGCGTTTCTTGATCAAGATACTCAGCTGTCGATTGTCATCACC AAGGGCGCGCGGGATGGAGAGGTGGCTATCAGATACGACGGGTCGGCCGAGCCTATCAAGCTTAGTGCACCGAAT CATGGGAAGTCCGATTCCATGGTCGCGACGATTGATGGAGATTTTTTGAGTATTCATCGTGTGGTAGATAACCGG ATACTCAGTGCTCGGCGTATTGTCCCGAAAGAGTCAATCCTTAAAGGGACTTCATTCCAGGGTGTCTATCACTGT GCCGAGATTGAATCTACCTTCCATTGCATTGGCGAGGATGGCATGCTATATGGTGCGTTCGATGGATATCTGGGT CAAGGAATTGCAACTCCCATGAAATATCTGGGAGATGATGTCTGGGTGTTGACTTGCCCACGTGGTTTGGATGCG CCAGCTCCGGGAGACTGGACCGTTGTCTTTTCTCGGGATGAGCATGATGCAATCCAAGGGTTTACTATTGGTTGT TGGTTGGCTAGGAAAGTTGACTATGTGAAGAGAGCCTGA |
| Transcript | >Pro_DTO377G3_2|g974.t1 ATGGCAATTGACGAAAAGGTTCAAGCGGTCTTGAACAAAACGGTCCTGCGTTATCGCGGCCCAGGAGGTGCCATC GCCGTCGTCAAAGATGGCGAGGTCATCGGCCAGCGTGTCTGGGGATTCGCCGATCTCGACCAGCGAATTCCCATG ACAGCTCAAACGCAAATCCCCATCTGTTCAATTACAAAACAATTTGTGTGTGCGTTGTTGATCGACCTGGAGCGC AATCCAACCCCAACACTAGCTGCAAAGGGCGATGTCCGGAAGCAGCTCTCAGATCACCTCGCCGAGATACTAAGC CCGGAGCTCACTTCTGACGGTGAACTGACAATTGATCACTTATGCGACATGCAATCCGGCATGCGCGACTACTGG GCTATGACCACACTATGGGGGTCCAAACCCGACGATGAGTTCCTGATAGCTAGAGACTGCGGCCCACTGCTTGCC CGAACCAAGTCATTCATGTTCCAGCCGGGAACGGAGTATTCCTACTGCAATGTCAATTTCCACGTCCTTGCCCGA ATCATCGAGCGAGCTACGGGCGAGTCTCTTGCCAAATTGCTCGAAGAGCGGATACTCCGACCGGCTGGTATGAGC ACGGCATTCCTTTGCCCCAACACCGCACATCACCCACCGCCCTGTGTCGGGTATGAGGGCGACGAGCAGCACGGC TTCACGGCCGCTGTCAATAGGATGGAATGGTCCGGTGATGCTGGACTAGTGGCTTCACTCGCTGATATGATCGAG TACGAGAAGTATCTCGATCGCTGTTACGCTGATCCGCAGAGCTGGTACCACACCGCGATCGCTGCTCCGAAGTTT AAAGATGGCACTCCTGCAAAATACCGTTATGGGCTAGATCACGCTGACATCGCTGGCGTGAACACCATTGGACAC GGTGGAGCGTTGCGAGGGTATCGACTGCATCGGCGACACGCTCCACGCGAGCGTTTGTCCGTCGTTGTTATGTCT AACAGTGACTTCGGTGCATTCGGCCCCAATATGGAGATCCTCCACGAGCTCTTGGGAATACCTAAGCCTGTGGCA TCAACCGTCCAGCCGGCCGCGGACTGGGTCGGCGCGTTTCTTGATCAAGATACTCAGCTGTCGATTGTCATCACC AAGGGCGCGCGGGATGGAGAGGTGGCTATCAGATACGACGGGTCGGCCGAGCCTATCAAGCTTAGTGCACCGAAT CATGGGAAGTCCGATTCCATGGTCGCGACGATTGATGGAGATTTTTTGAGTATTCATCGTGTGGTAGATAACCGG ATACTCAGTGCTCGGCGTATTGTCCCGAAAGAGTCAATCCTTAAAGGGACTTCATTCCAGGGTGTCTATCACTGT GCCGAGATTGAATCTACCTTCCATTGCATTGGCGAGGATGGCATGCTATATGGTGCGTTCGATGGATATCTGGGT CAAGGAATTGCAACTCCCATGAAATATCTGGGAGATGATGTCTGGGTGTTGACTTGCCCACGTGGTTTGGATGCG CCAGCTCCGGGAGACTGGACCGTTGTCTTTTCTCGGGATGAGCATGATGCAATCCAAGGGTTTACTATTGGTTGT TGGTTGGCTAGGAAAGTTGACTATGTGAAGAGAGCCTGA |
| Gene | >Pro_DTO377G3_2|g974.t1 ATGGCAATTGACGAAAAGGTTCAAGCGGTCTTGAACAAAACGGTCCTGCGTTATCGCGGCCCAGGAGGTGCCATC GCCGTCGTCAAAGATGGCGAGGTCATCGGCCAGCGTGTCTGGGGATTCGCCGATCTCGACCAGCGAATTCCCATG ACAGCTCAAACGCAAATCCCCATCTGTTCAATTACAAAACAATTTGTGTGTGCGTTGTTGATCGACCTGGAGCGC AATCCAACCCCAACACTAGCTGCAAAGGGCGATGTCCGGAAGCAGCTCTCAGATCACCTCGCCGAGATACTAAGC CCGGAGCTCACTTCTGACGGTGAACTGACAATTGATCACTTATGCGACATGCAATCCGGCATGCGCGACTACTGG GCTATGACCACACTATGGGGGTCCAAACCCGACGATGAGTTCCTGATAGCTAGAGACTGCGGCCCACTGCTTGCC CGAACCAAGTCATTCATGTTCCAGCCGGGAACGGAGTATTCCTACTGCAATGTCAATTTCCACGTCCTTGCCCGA ATCATCGAGCGAGCTACGGGCGAGTCTCTTGCCAAATTGCTCGAAGAGCGGATACTCCGACCGGCTGGTATGAGC ACGGCATTCCTTTGCCCCAACACCGCACATCACCCACCGCCCTGTGTCGGGTATGAGGGCGACGAGCAGCACGGC TTCACGGCCGCTGTCAATAGGATGGAATGGTCCGGTGATGCTGGACTAGTGGCTTCACTCGCTGATATGATCGAG TACGAGAAGTATCTCGATCGCTGTTACGCTGATCCGCAGAGCTGGTACCACACCGCGATCGCTGCTCCGAAGTTT AAAGATGGCACTCCTGCAAAATACCGTTATGGGCTAGATCACGCTGACATCGCTGGCGTGAACACCATTGGACAC GGTGGAGCGTTGCGAGGGTATCGACTGCATCGGCGACACGCTCCACGCGAGCGTTTGTCCGTCGTTGTTATGTCT AACAGTGACTTCGGTGCATTCGGCCCCAATATGGAGATCCTCCACGAGCTCTTGGGAATACCTAAGCCTGTGGCA TCAACCGTCCAGCCGGCCGCGGACTGGGTCGGCGCGTTTCTTGATCAAGATACTCAGCTGTCGATTGTCATCACC AAGGGCGCGCGGGATGGAGAGGTGGCTATCAGATACGACGGGTCGGCCGAGCCTATCAAGCTTAGTGCACCGAAT CATGGGAAGTCCGATTCCATGGTCGCGACGATTGATGGAGATTTTTTGAGTATTCATCGTGTGGTAGATAACCGG ATACTCAGTGCTCGGCGTATTGTCCCGAAAGAGTCAATCCTTAAAGGGACTTCATTCCAGGGTGTCTATCACTGT GCCGAGATTGAATCTACCTTCCATTGCATTGGCGAGGATGGCATGCTATATGGTGCGTTCGATGGATATCTGGGT CAAGGAATTGCAACTCCCATGAAATATCTGGGAGATGATGTCTGGGTGTTGACTTGCCCACGTGGTTTGGATGCG CCAGCTCCGGGAGACTGGACCGTTGTCTTTTCTCGGGATGAGCATGATGCAATCCAAGGGTTTACTATTGGTTGT TGGTTGGCTAGGAAAGTTGACTATGTGAAGAGAGCCTGA |