© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g9693.t1 |
| Gene name | |
| Location | scaffold_63:740..3424 |
| Strand | - |
| Gene length (bp) | 2684 |
| Transcript length (bp) | 2313 |
| Coding sequence length (bp) | 2313 |
| Protein length (aa) | 771 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF03169 | OPT | OPT oligopeptide transporter protein | 8.3E-122 | 71 | 740 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0035673 | oligopeptide transmembrane transporter activity | Yes |
| GO:1904680 | peptide transmembrane transporter activity | No |
| GO:0042887 | amide transmembrane transporter activity | No |
| GO:0022857 | transmembrane transporter activity | No |
| GO:0005215 | transporter activity | No |
| GO:0003674 | molecular_function | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 53 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 70 | 92 | 22 |
| 2 | 99 | 121 | 22 |
| 3 | 193 | 215 | 22 |
| 4 | 253 | 275 | 22 |
| 5 | 334 | 356 | 22 |
| 6 | 404 | 426 | 22 |
| 7 | 459 | 478 | 19 |
| 8 | 485 | 507 | 22 |
| 9 | 571 | 593 | 22 |
| 10 | 635 | 657 | 22 |
| 11 | 685 | 707 | 22 |
| 12 | 720 | 742 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 2.43 | 0.68 | 4.18 |
| 5d_25C | Five days - 25 degrees Celsius | 2.68 | 0.74 | 4.61 |
| 7d_25C | Seven days - 25 degrees Celsius | 3.75 | 1.19 | 6.32 |
| 10d_25C | Ten days - 25 degrees Celsius | 0.99 | 0.08 | 1.90 |
| 7d_15C | Seven days - 15 degrees Celsius | 3.33 | 0.81 | 5.84 |
| 7d_30C | Seven days - 30 degrees Celsius | 1.08 | 0.13 | 2.03 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.875512 | no |
| 3d_25C | 7d_25C | 0.307873 | no |
| 3d_25C | 7d_15C | 0.516955 | no |
| 3d_25C | 7d_30C | 0.065461 | no |
| 3d_25C | 10d_25C | 0.069424 | no |
| 5d_25C | 7d_25C | 0.454896 | no |
| 5d_25C | 7d_15C | 0.683417 | no |
| 5d_25C | 7d_30C | 0.039566 | yes |
| 5d_25C | 10d_25C | 0.043601 | yes |
| 7d_25C | 7d_15C | 0.826794 | no |
| 7d_25C | 7d_30C | 0.004840 | yes |
| 7d_25C | 10d_25C | 0.005626 | yes |
| 7d_15C | 7d_30C | 0.010083 | yes |
| 7d_15C | 10d_25C | 0.012904 | yes |
| 7d_30C | 10d_25C | 0.907734 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g9693.t1 MSKSPVETSDLSTVASQEAIGEKYPAAVVTTKDEHGHGEDDADSDPDAIIITGADAAIHLLSLRDDFDTVLTFRS ILLASGLACFQAVMNQIYQFKPTLITIQGTFIVLISYFVGNAWARFLPRGDKFEARWRAKGGQGALPWWIKVIKF FNYGPWSLKEHAICSITATSASNAASTSTVFAAQDLFYNLPLTPATVILSTISIGLFGYGICGILRPIAVWHTEA VYWSSLPTVKTLQGLHWQEVKNSKPLRYFWYAFTGMSIYEIIPAYIFPWLNSVSIPCLAAQKATGETGAVLNNIF GGATNNQGLGLFSFSFDWQYLTSFQTSLPLKLQIHQAAGLFSCFFIMIGIYYGNGWNSRSLPFMSTRMLTNNGTT YPLHDVFPGGVLDETALTKFGLPRLTGTFAFAMFMANAAMGALIVHCILFWGKDIRRSYKSAREGRYDDRHHDHM AKHYKEAPWWWYIVVLVGSFILGIIVTVKENITLSVWAYVISLLVGCIIAPFSVILYSRFGNGIATNNLSKMLAG LILPGRPVGNMYFAAWSHNVISNAVMLSNDLKMGEYLKIPPRIMFLTQLYGTVLGGFVNYAIMISIVSSNRALLT DGNGNSSWSGAGIQSYNTNAASWALAPYIYKIGTPYGAIPIGLAVGAGAVVVHRIFYHFVPKIGKLDVAEINLPQ YIQYAGYIPYNQSQTCVIFTWITAGFYVQYYLRNYKPRIFKDYSYLITGAFDGASLTVLFILSFAVFGAGGPSHP FPTWWGNNDNGNYDWCPVVE* |
| Coding | >Pro_DTO377G3_2|g9693.t1 ATGTCCAAGTCGCCTGTAGAAACCAGTGACTTGTCCACGGTGGCTAGCCAGGAAGCCATTGGCGAGAAGTATCCT GCTGCTGTGGTTACTACCAAAGATGAGCATGGACATGGTGAAGATGACGCCGACAGCGATCCGGACGCGATTATC ATCACCGGTGCTGACGCAGCTATTCATCTCTTATCTCTTCGAGATGACTTTGACACGGTCTTGACCTTTCGCAGT ATATTACTTGCTTCCGGCCTTGCGTGTTTCCAGGCTGTGATGAACCAGATTTATCAGTTCAAACCGACCTTGATT ACGATTCAAGGAACCTTCATCGTTCTCATCTCCTACTTTGTCGGCAATGCCTGGGCGAGATTCCTTCCCCGTGGC GATAAATTCGAAGCTCGCTGGAGGGCGAAAGGCGGCCAGGGAGCCCTACCATGGTGGATCAAGGTCATAAAGTTC TTCAACTACGGGCCATGGAGTTTGAAAGAACATGCAATCTGTTCAATCACTGCTACGTCGGCCTCAAATGCGGCG TCTACCTCAACCGTGTTTGCAGCACAGGATCTATTCTACAATCTTCCCCTCACCCCCGCGACTGTGATCTTGAGT ACTATCTCTATTGGCCTGTTTGGCTACGGGATCTGCGGAATTCTGCGTCCCATCGCTGTCTGGCACACGGAGGCC GTCTACTGGAGTAGTTTGCCTACCGTCAAGACTCTCCAGGGACTTCATTGGCAGGAAGTCAAAAACTCGAAACCG CTTCGATACTTTTGGTATGCATTCACTGGCATGTCAATATACGAGATCATTCCTGCCTACATCTTCCCGTGGCTA AACTCTGTGTCTATTCCGTGTTTGGCTGCACAAAAGGCCACTGGGGAAACTGGTGCCGTACTCAACAATATCTTT GGTGGGGCAACCAACAATCAGGGTCTCGGTCTATTTTCGTTCTCGTTCGATTGGCAATATCTCACCTCTTTCCAA ACCTCACTCCCTCTCAAACTGCAAATTCATCAGGCAGCTGGACTTTTTTCCTGCTTCTTTATTATGATAGGCATT TATTACGGAAATGGCTGGAATTCGAGATCACTTCCATTCATGTCGACGAGAATGCTCACGAACAACGGCACCACA TACCCCCTGCACGACGTTTTCCCCGGTGGTGTCCTCGACGAGACTGCCCTGACCAAGTTTGGCTTGCCGAGGCTC ACTGGAACTTTTGCATTCGCCATGTTCATGGCCAACGCAGCAATGGGTGCCCTGATCGTTCATTGCATCTTATTT TGGGGCAAGGATATCCGTCGCTCCTATAAAAGCGCGAGAGAGGGTAGATATGATGATCGGCACCATGATCATATG GCCAAGCATTACAAAGAGGCTCCGTGGTGGTGGTATATCGTCGTGCTTGTTGGCAGCTTTATTCTCGGCATAATT GTGACTGTGAAAGAAAACATCACCTTGTCGGTTTGGGCATATGTTATTTCACTGCTAGTAGGATGCATTATCGCC CCCTTCAGTGTCATCCTCTATTCTCGCTTCGGTAATGGTATTGCAACCAACAATTTGTCAAAAATGCTGGCTGGA CTCATCCTGCCTGGACGCCCGGTCGGTAACATGTACTTCGCTGCCTGGTCGCATAACGTCATTTCAAATGCGGTT ATGCTTTCCAATGACCTGAAGATGGGCGAATACCTCAAAATCCCGCCCCGGATCATGTTCCTGACACAGTTGTAC GGCACAGTTCTTGGTGGTTTCGTCAACTACGCCATCATGATCTCTATTGTGTCAAGCAATCGAGCGCTTCTCACC GACGGCAATGGAAATTCCTCCTGGAGTGGTGCAGGCATACAATCTTACAACACCAATGCCGCATCATGGGCTTTG GCTCCCTATATCTATAAGATTGGTACCCCATACGGGGCTATACCTATTGGTTTAGCCGTTGGAGCTGGTGCTGTG GTTGTTCACCGCATCTTTTATCACTTTGTACCCAAAATCGGAAAGCTCGACGTTGCGGAAATCAATCTCCCGCAG TACATCCAATACGCCGGTTATATTCCCTACAACCAAAGCCAGACCTGCGTCATCTTCACCTGGATCACCGCCGGA TTCTACGTTCAATATTATCTCCGCAACTATAAGCCGCGGATTTTCAAGGATTATTCATATCTCATTACCGGCGCC TTTGATGGTGCTAGTTTGACGGTTCTCTTCATCCTCTCGTTTGCTGTTTTCGGCGCTGGTGGGCCTTCGCACCCA TTCCCAACGTGGTGGGGAAACAACGATAATGGGAACTACGATTGGTGTCCGGTAGTAGAGTAG |
| Transcript | >Pro_DTO377G3_2|g9693.t1 ATGTCCAAGTCGCCTGTAGAAACCAGTGACTTGTCCACGGTGGCTAGCCAGGAAGCCATTGGCGAGAAGTATCCT GCTGCTGTGGTTACTACCAAAGATGAGCATGGACATGGTGAAGATGACGCCGACAGCGATCCGGACGCGATTATC ATCACCGGTGCTGACGCAGCTATTCATCTCTTATCTCTTCGAGATGACTTTGACACGGTCTTGACCTTTCGCAGT ATATTACTTGCTTCCGGCCTTGCGTGTTTCCAGGCTGTGATGAACCAGATTTATCAGTTCAAACCGACCTTGATT ACGATTCAAGGAACCTTCATCGTTCTCATCTCCTACTTTGTCGGCAATGCCTGGGCGAGATTCCTTCCCCGTGGC GATAAATTCGAAGCTCGCTGGAGGGCGAAAGGCGGCCAGGGAGCCCTACCATGGTGGATCAAGGTCATAAAGTTC TTCAACTACGGGCCATGGAGTTTGAAAGAACATGCAATCTGTTCAATCACTGCTACGTCGGCCTCAAATGCGGCG TCTACCTCAACCGTGTTTGCAGCACAGGATCTATTCTACAATCTTCCCCTCACCCCCGCGACTGTGATCTTGAGT ACTATCTCTATTGGCCTGTTTGGCTACGGGATCTGCGGAATTCTGCGTCCCATCGCTGTCTGGCACACGGAGGCC GTCTACTGGAGTAGTTTGCCTACCGTCAAGACTCTCCAGGGACTTCATTGGCAGGAAGTCAAAAACTCGAAACCG CTTCGATACTTTTGGTATGCATTCACTGGCATGTCAATATACGAGATCATTCCTGCCTACATCTTCCCGTGGCTA AACTCTGTGTCTATTCCGTGTTTGGCTGCACAAAAGGCCACTGGGGAAACTGGTGCCGTACTCAACAATATCTTT GGTGGGGCAACCAACAATCAGGGTCTCGGTCTATTTTCGTTCTCGTTCGATTGGCAATATCTCACCTCTTTCCAA ACCTCACTCCCTCTCAAACTGCAAATTCATCAGGCAGCTGGACTTTTTTCCTGCTTCTTTATTATGATAGGCATT TATTACGGAAATGGCTGGAATTCGAGATCACTTCCATTCATGTCGACGAGAATGCTCACGAACAACGGCACCACA TACCCCCTGCACGACGTTTTCCCCGGTGGTGTCCTCGACGAGACTGCCCTGACCAAGTTTGGCTTGCCGAGGCTC ACTGGAACTTTTGCATTCGCCATGTTCATGGCCAACGCAGCAATGGGTGCCCTGATCGTTCATTGCATCTTATTT TGGGGCAAGGATATCCGTCGCTCCTATAAAAGCGCGAGAGAGGGTAGATATGATGATCGGCACCATGATCATATG GCCAAGCATTACAAAGAGGCTCCGTGGTGGTGGTATATCGTCGTGCTTGTTGGCAGCTTTATTCTCGGCATAATT GTGACTGTGAAAGAAAACATCACCTTGTCGGTTTGGGCATATGTTATTTCACTGCTAGTAGGATGCATTATCGCC CCCTTCAGTGTCATCCTCTATTCTCGCTTCGGTAATGGTATTGCAACCAACAATTTGTCAAAAATGCTGGCTGGA CTCATCCTGCCTGGACGCCCGGTCGGTAACATGTACTTCGCTGCCTGGTCGCATAACGTCATTTCAAATGCGGTT ATGCTTTCCAATGACCTGAAGATGGGCGAATACCTCAAAATCCCGCCCCGGATCATGTTCCTGACACAGTTGTAC GGCACAGTTCTTGGTGGTTTCGTCAACTACGCCATCATGATCTCTATTGTGTCAAGCAATCGAGCGCTTCTCACC GACGGCAATGGAAATTCCTCCTGGAGTGGTGCAGGCATACAATCTTACAACACCAATGCCGCATCATGGGCTTTG GCTCCCTATATCTATAAGATTGGTACCCCATACGGGGCTATACCTATTGGTTTAGCCGTTGGAGCTGGTGCTGTG GTTGTTCACCGCATCTTTTATCACTTTGTACCCAAAATCGGAAAGCTCGACGTTGCGGAAATCAATCTCCCGCAG TACATCCAATACGCCGGTTATATTCCCTACAACCAAAGCCAGACCTGCGTCATCTTCACCTGGATCACCGCCGGA TTCTACGTTCAATATTATCTCCGCAACTATAAGCCGCGGATTTTCAAGGATTATTCATATCTCATTACCGGCGCC TTTGATGGTGCTAGTTTGACGGTTCTCTTCATCCTCTCGTTTGCTGTTTTCGGCGCTGGTGGGCCTTCGCACCCA TTCCCAACGTGGTGGGGAAACAACGATAATGGGAACTACGATTGGTGTCCGGTAGTAGAGTAG |
| Gene | >Pro_DTO377G3_2|g9693.t1 ATGTCCAAGTCGCCTGTAGAAACCAGTGACTTGTCCACGGTGGCTAGCCAGGAAGCCATTGGCGAGAAGTATCCT GCTGCTGTGGTTACTACCAAAGATGAGCATGGACATGGTGAAGATGACGCCGACAGCGATCCGGACGCGATTATC ATCACCGGTGCTGACGCAGCTATTCATCTCTTATCTCTTCGAGATGACTTTGACACGGTCTTGACCTTTCGCAGT ATATTACTTGCTTCCGGCCTTGCGTGTTTCCAGGCTGTGATGAACCAGATTTATCAGGTATTTCCAATCCATCTA TTGCCCATAGAGATACTAACAACTCGTTCTATAGTTCAAACCGACCTTGATTACGATTCAAGGAACCTTCATCGT TCTCATCTCCTACTTTGTCGGCAATGCCTGGGCGAGATTCCTTCCCCGTGGCGATAAATTCGAAGCTCGCTGGAG GGCGAAAGGCGGCCAGGGAGCCCTACCATGGTGGATCAAGGTCATAAAGTTCTTCAACTACGGGCCATGGAGTTT GAAAGAACATGCAATCTGTTCAATCACTGCTACGTCGGCCTCAAATGCGGCGTCTACCTCAACCGTGTTTGCAGC ACAGGATCTATTCTACAATCTTCCCCTCACCCCCGCGACTGTGATCTTGAGTACTATCTCTATTGGCCTGTTTGG CTACGGGATCTGCGGAATTCTGCGTCCCATCGCTGTCTGGCACACGGAGGCCGTCTACTGGAGTAGTTTGCCTAC CGTCAAGACTCTCCAGGGACTTCATTGGCAGGAAGTCAAAAACTCGAAACCGCTTCGATACTTTTGGTATGCATT CACTGGCATGTCAATATACGAGATCATTCCTGCCTACATCTTCCCGTGGCTAAACTCTGTGTCTATTCCGGTAAG TGGTATCGCAATGATCTCTTCAGATGAACTTTCTGATTATGAGAATCTCATTGGAACAATTTATTAACTTCGGAC TTTATAGTGTTTGGCTGCACAAAAGGCCACTGGGGAAACTGGTGCCGTACTCAACAATATCTTTGGTGGGGCAAC CAACAATCAGGGTCTCGGTCTATTTTCGTTCTCGTTCGATTGGCAATATGTGAGATGATGTCCCCCTATAACACA TTGATCTATCAAGTCATCTAACAGAAGCAGCTCACCTCTTTCCAAACCTCACTCCCTCTCAAACTGCAAATTCAT CAGGCAGCTGGACTTTTTTCCTGCTTCTTTATTATGATAGGCATTTATTACGGAAATGGCTGGAATTCGAGATCA CTTCCATTCATGTCGACGAGAATGCTCACGAACAACGGCACCACATACCCCCTGCACGACGTTTTCCCCGGTGGT GTCCTCGACGAGACTGCCCTGACCAAGTTTGGCTTGCCGAGGCTCACTGGAACTTTTGCATTCGCCATGTTCATG GCCAACGCAGCAATGGGTGCCCTGATCGTTCATTGCATCTTATTTTGGGGCAAGGATATCCGTCGCTCCTATAAA AGCGCGAGAGAGGGTAGATATGATGATCGGCACCATGATCATATGGCCAAGCATTACAAAGAGGCTCCGTGGTGG TGGTATATCGTCGTGCTTGTTGGCAGCTTTATTCTCGGCATAATTGTGACTGTGAAAGAAAACATCACCTTGTCG GTTTGGGCATATGTTATTTCACTGCTAGTAGGATGCATTATCGCCCCCTTCGTGAGTACAACGTCCTCGATACTG AGCTTCATGCAGAAAAACTGACTATGACCGTGCTATAGAGTGTCATCCTCTATTCTCGCTTCGGTAATGGTATTG CAACCAACAATTTGTCAAAAATGCTGGCTGGACTCATCCTGCCTGGACGCCCGGTCGGTAACATGTACTTCGCTG CCTGGTCGCATAACGTCATTTCAAATGCGGTTATGCTTTCCAATGACCTGAAGATGGGCGAATACCGTGAGTATC TATGTCATTGTTTTGATCAAAGATATGTTTTTAACTTATCTCTTAGTCAAAATCCCGCCCCGGATCATGTTCCTG ACACAGTTGTACGGCACAGTTCTTGGTGGTTTCGTCAACTACGCCATCATGATCTCTATTGTGTCAAGCAATCGA GCGCTTCTCACCGACGGCAATGGAAATTCCTCCTGGAGTGGTGCAGGCATACAATCTTACAACACCAATGCCGCA TCATGGGCTTTGGCTCCCTATATCTATAAGATTGGTACCCCATACGGGGCTATACCTATTGGTTTAGCCGTTGGA GCTGGTGCTGTGGTTGTTCACCGCATCTTTTATCACGTGAGTAACCCCATAGCCTTCCCTATTGCACTTGGAACT GACATCCGTTTGACTCTTAGTTTGTACCCAAAATCGGAAAGCTCGACGTTGCGGAAATCAATCTCCCGCAGTACA TCCAATACGCCGGTTATATTCCCTACAACCAAAGCCAGACCTGCGTCATCTTCACCTGGATCACCGCCGGATTCT ACGTTCAATATTATCTCCGCAACTATAAGCCGCGGATTTTCAAGGATTATTCATATCTCATTACCGGCGCCTTTG ATGGTGCTAGTTTGACGGTTCTCTTCATCCTCTCGTTTGCTGTTTTCGGCGCTGGTGGGCCTTCGCACCCATTCC CAACGTGGTGGGGAAACAACGATAATGGGAACTACGATTGGTGTCCGGTAGTAGAGTAG |