Protein ID | Pro_DTO377G3_2|g968.t1 |
Gene name | |
Location | scaffold_01:2563218..2566054 |
Strand | + |
Gene length (bp) | 2836 |
Transcript length (bp) | 2664 |
Coding sequence length (bp) | 2664 |
Protein length (aa) | 888 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF17681 | GCP_N_terminal | Gamma tubulin complex component N-terminal | 4.3E-63 | 174 | 512 |
PF04130 | GCP_C_terminal | Gamma tubulin complex component C-terminal | 1.3E-58 | 515 | 874 |
GO Term | Description | Terminal node |
---|---|---|
GO:0043015 | gamma-tubulin binding | Yes |
GO:0005515 | protein binding | No |
GO:0008092 | cytoskeletal protein binding | No |
GO:0005488 | binding | No |
GO:0015631 | tubulin binding | No |
GO:0003674 | molecular_function | No |
SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
---|---|---|
No | 1 - 20 | 0.45 |
Expression values
Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
---|---|---|---|---|
3d_25C | Three days - 25 degrees Celsius | 9.87 | 4.97 | 14.77 |
5d_25C | Five days - 25 degrees Celsius | 9.51 | 4.74 | 14.29 |
7d_25C | Seven days - 25 degrees Celsius | 10.23 | 5.19 | 15.26 |
10d_25C | Ten days - 25 degrees Celsius | 10.67 | 5.47 | 15.87 |
7d_15C | Seven days - 15 degrees Celsius | 9.73 | 4.87 | 14.59 |
7d_30C | Seven days - 30 degrees Celsius | 13.26 | 7.16 | 19.36 |
Differential expression
Label1 | Label2 | Q-value | Significant difference |
---|---|---|---|
3d_25C | 5d_25C | 0.934727 | no |
3d_25C | 7d_25C | 0.934532 | no |
3d_25C | 7d_15C | 0.973797 | no |
3d_25C | 7d_30C | 0.316065 | no |
3d_25C | 10d_25C | 0.847283 | no |
5d_25C | 7d_25C | 0.858498 | no |
5d_25C | 7d_15C | 0.959911 | no |
5d_25C | 7d_30C | 0.246414 | no |
5d_25C | 10d_25C | 0.760888 | no |
7d_25C | 7d_15C | 0.904851 | no |
7d_25C | 7d_30C | 0.374648 | no |
7d_25C | 10d_25C | 0.919226 | no |
7d_15C | 7d_30C | 0.285400 | no |
7d_15C | 10d_25C | 0.810726 | no |
7d_30C | 10d_25C | 0.482673 | no |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Pro_DTO377G3_2|g968.t1 MSANDRAAYMNASRPRAVSNRVDSETRGASPLQIENKDPLRRSSSNQKHRASRDQKSMADKRSERMVITSRERAV RRNPVNPVKESINAASRGDWDKTRPRKPVQLDDGNSSFRTGEKDLADSPWNPQASLIPHSTAPLACRVSVPPLAS TAPQALHPRPLRELSPDAQEAAILEDLLFVFMGFEGQYVHYASSYDPSIEKDRLTGPIFQIAPGLDPTLRDLIQS MLKMATHYSAMEAFVEIQSRAECGAVSHSLCASIRKLLKDYLILIAQLEGQLLNNPTFTLHLLHLYTMPTSQCLS QLYSMGQELLLKNGLLDEELEESTDDFDEDVDNILEQLKEGGDLVPGSMARKKMCKGGNILGLLTGRLASFSGDP ITKTLLQTLLRDASRPYMAMLNEWLHHGGIRDPHAEFLVKEQKWIKREKLEEDYTDEYWEKRYTIRENEVPPQLK SVQDKVLLAGKYLNVVRECGGVDVSKEVKDVPKTLDDPRFLDNVNSAYTYANASLLNLLVTKNSLTTRFRSLKHY FFLDRSDFFSYFLELGASELRKPARAVNEGKLQSLLDIVLRQPGSVAALDPFKEDVKVRMNKIGLTKWLMQVVNV SGVNQEGAEAEKQQGSAVHSADEDKDILGFDALELDYSVPFPLSLVISRKTVLRYQLIFRHLLSLRHLETLLVTS WADQNKTISWRHKSSDRRLEIWKRRAWNLRAKMLVFVQQLLYFCTAEVIEPNWVGLMDRVNSVDADASEVEENYM KQVNRTVDELMQDHVDFLDTCLKECMLTQAKLLKIHSKLVTCCTMFASWTAASLSRALASADPDLAGGKVPGADA RGYDPTRIGKLEDTLKRYEDHFSRHLRILMDSLNYFAATESVVLLKLAHSLTSISREESKED* |
Coding | >Pro_DTO377G3_2|g968.t1 ATGTCTGCCAATGACCGCGCCGCGTATATGAACGCTTCACGACCCCGCGCGGTCTCCAATCGCGTCGATTCCGAA ACTCGCGGAGCATCGCCGTTACAGATCGAGAATAAGGATCCCTTGCGCCGCAGCAGCTCAAATCAAAAACACAGA GCATCCCGAGATCAGAAGAGCATGGCCGATAAGCGCTCAGAACGCATGGTAATCACATCACGGGAAAGGGCAGTG CGAAGGAACCCTGTGAACCCTGTTAAGGAATCTATCAATGCGGCTAGCAGGGGCGATTGGGATAAAACTCGGCCC AGGAAGCCTGTCCAACTTGATGACGGGAATTCCAGTTTCCGAACTGGGGAGAAAGACCTGGCTGATTCACCATGG AATCCCCAAGCATCATTGATTCCTCACTCGACAGCTCCCCTCGCATGTCGTGTATCAGTTCCTCCTCTAGCTTCG ACGGCTCCGCAGGCCCTTCATCCTCGGCCACTTCGAGAGCTCTCACCCGATGCCCAGGAGGCGGCGATCTTGGAA GACTTGTTGTTCGTGTTCATGGGATTCGAAGGTCAATATGTTCACTACGCTAGCTCATACGACCCATCAATCGAG AAAGACCGCCTCACGGGCCCGATCTTCCAGATAGCCCCAGGCCTGGACCCGACCCTCCGTGATCTCATCCAGTCC ATGTTGAAAATGGCTACTCACTACAGTGCCATGGAGGCATTTGTGGAAATTCAAAGTCGCGCTGAGTGTGGTGCT GTCAGTCACTCACTATGCGCATCTATTCGAAAGCTCCTCAAAGATTACCTGATCCTTATCGCCCAGCTCGAAGGC CAGCTGCTGAACAATCCTACATTTACCTTACACCTTCTCCATCTCTACACAATGCCTACCAGTCAATGTTTATCT CAATTATATTCGATGGGCCAGGAACTGTTGCTCAAAAATGGTCTTCTAGATGAGGAGCTCGAGGAGTCGACTGAT GACTTCGATGAGGATGTTGACAATATACTTGAACAACTCAAAGAAGGGGGGGACTTAGTGCCAGGTTCTATGGCC CGCAAGAAAATGTGCAAAGGAGGCAATATTCTCGGACTCCTAACAGGGCGTCTGGCTTCATTCTCGGGTGATCCG ATCACTAAAACCTTGCTTCAGACCTTACTGCGTGACGCCAGTCGGCCTTACATGGCTATGCTAAACGAATGGTTG CACCATGGCGGTATTAGAGATCCCCATGCCGAGTTCTTGGTCAAGGAACAAAAATGGATCAAACGCGAGAAACTC GAGGAAGACTACACGGATGAATATTGGGAGAAACGCTACACGATTCGCGAGAACGAGGTTCCTCCTCAGCTGAAG AGCGTGCAGGATAAAGTTCTGCTGGCTGGAAAGTATCTCAACGTGGTGCGTGAATGTGGTGGTGTCGACGTCAGC AAAGAGGTCAAAGATGTACCGAAGACGCTCGACGATCCACGCTTCTTGGACAACGTAAATTCTGCCTACACCTAT GCCAATGCTTCCCTGTTAAATCTTCTTGTCACAAAAAACTCCCTCACTACTCGATTCCGCTCCCTGAAACATTAC TTCTTCCTCGATCGCTCTGATTTTTTTTCCTACTTCCTCGAGCTTGGTGCTTCCGAGCTACGAAAACCGGCACGT GCCGTCAACGAAGGGAAGCTGCAGTCACTGTTGGATATTGTCCTTCGACAGCCTGGCAGCGTTGCAGCACTGGAC CCGTTCAAGGAGGATGTCAAGGTGCGGATGAACAAGATCGGCCTCACGAAATGGTTGATGCAGGTTGTGAATGTT TCAGGCGTCAACCAAGAGGGCGCGGAAGCGGAGAAGCAACAAGGTTCTGCTGTCCATTCCGCTGATGAGGACAAA GATATTCTTGGATTCGATGCGCTTGAGCTGGACTATTCAGTTCCATTCCCCCTATCACTGGTAATTAGCCGTAAA ACCGTTCTGCGGTACCAACTTATTTTCCGCCATCTTCTCTCGCTGCGCCATCTCGAGACGTTGTTGGTCACGTCC TGGGCAGACCAGAACAAAACCATCAGCTGGCGGCATAAATCCTCCGATCGACGGCTTGAAATATGGAAACGGCGG GCGTGGAACTTGCGCGCGAAGATGTTGGTGTTTGTTCAGCAGCTTTTGTACTTTTGCACGGCTGAGGTCATTGAG CCCAATTGGGTGGGTCTGATGGATCGTGTCAACAGCGTTGACGCCGACGCGTCGGAGGTGGAGGAAAATTATATG AAGCAGGTCAATCGAACGGTTGATGAGCTGATGCAAGATCATGTGGATTTCTTGGATACCTGTTTGAAGGAGTGC ATGCTCACACAGGCTAAACTGTTGAAGATCCATTCGAAACTGGTGACTTGCTGCACCATGTTTGCTTCCTGGACT GCGGCATCACTTTCACGCGCCTTGGCTTCAGCCGATCCTGACTTGGCTGGAGGAAAAGTCCCTGGCGCTGATGCC AGAGGATATGATCCAACGCGGATTGGAAAACTCGAGGACACACTGAAACGATACGAGGACCATTTCTCGCGCCAT CTCCGCATTTTGATGGACAGCTTGAACTACTTCGCCGCAACGGAGAGTGTGGTGCTCCTGAAGCTTGCACATTCT TTGACCTCTATTAGCCGAGAGGAGAGTAAAGAGGATTGA |
Transcript | >Pro_DTO377G3_2|g968.t1 ATGTCTGCCAATGACCGCGCCGCGTATATGAACGCTTCACGACCCCGCGCGGTCTCCAATCGCGTCGATTCCGAA ACTCGCGGAGCATCGCCGTTACAGATCGAGAATAAGGATCCCTTGCGCCGCAGCAGCTCAAATCAAAAACACAGA GCATCCCGAGATCAGAAGAGCATGGCCGATAAGCGCTCAGAACGCATGGTAATCACATCACGGGAAAGGGCAGTG CGAAGGAACCCTGTGAACCCTGTTAAGGAATCTATCAATGCGGCTAGCAGGGGCGATTGGGATAAAACTCGGCCC AGGAAGCCTGTCCAACTTGATGACGGGAATTCCAGTTTCCGAACTGGGGAGAAAGACCTGGCTGATTCACCATGG AATCCCCAAGCATCATTGATTCCTCACTCGACAGCTCCCCTCGCATGTCGTGTATCAGTTCCTCCTCTAGCTTCG ACGGCTCCGCAGGCCCTTCATCCTCGGCCACTTCGAGAGCTCTCACCCGATGCCCAGGAGGCGGCGATCTTGGAA GACTTGTTGTTCGTGTTCATGGGATTCGAAGGTCAATATGTTCACTACGCTAGCTCATACGACCCATCAATCGAG AAAGACCGCCTCACGGGCCCGATCTTCCAGATAGCCCCAGGCCTGGACCCGACCCTCCGTGATCTCATCCAGTCC ATGTTGAAAATGGCTACTCACTACAGTGCCATGGAGGCATTTGTGGAAATTCAAAGTCGCGCTGAGTGTGGTGCT GTCAGTCACTCACTATGCGCATCTATTCGAAAGCTCCTCAAAGATTACCTGATCCTTATCGCCCAGCTCGAAGGC CAGCTGCTGAACAATCCTACATTTACCTTACACCTTCTCCATCTCTACACAATGCCTACCAGTCAATGTTTATCT CAATTATATTCGATGGGCCAGGAACTGTTGCTCAAAAATGGTCTTCTAGATGAGGAGCTCGAGGAGTCGACTGAT GACTTCGATGAGGATGTTGACAATATACTTGAACAACTCAAAGAAGGGGGGGACTTAGTGCCAGGTTCTATGGCC CGCAAGAAAATGTGCAAAGGAGGCAATATTCTCGGACTCCTAACAGGGCGTCTGGCTTCATTCTCGGGTGATCCG ATCACTAAAACCTTGCTTCAGACCTTACTGCGTGACGCCAGTCGGCCTTACATGGCTATGCTAAACGAATGGTTG CACCATGGCGGTATTAGAGATCCCCATGCCGAGTTCTTGGTCAAGGAACAAAAATGGATCAAACGCGAGAAACTC GAGGAAGACTACACGGATGAATATTGGGAGAAACGCTACACGATTCGCGAGAACGAGGTTCCTCCTCAGCTGAAG AGCGTGCAGGATAAAGTTCTGCTGGCTGGAAAGTATCTCAACGTGGTGCGTGAATGTGGTGGTGTCGACGTCAGC AAAGAGGTCAAAGATGTACCGAAGACGCTCGACGATCCACGCTTCTTGGACAACGTAAATTCTGCCTACACCTAT GCCAATGCTTCCCTGTTAAATCTTCTTGTCACAAAAAACTCCCTCACTACTCGATTCCGCTCCCTGAAACATTAC TTCTTCCTCGATCGCTCTGATTTTTTTTCCTACTTCCTCGAGCTTGGTGCTTCCGAGCTACGAAAACCGGCACGT GCCGTCAACGAAGGGAAGCTGCAGTCACTGTTGGATATTGTCCTTCGACAGCCTGGCAGCGTTGCAGCACTGGAC CCGTTCAAGGAGGATGTCAAGGTGCGGATGAACAAGATCGGCCTCACGAAATGGTTGATGCAGGTTGTGAATGTT TCAGGCGTCAACCAAGAGGGCGCGGAAGCGGAGAAGCAACAAGGTTCTGCTGTCCATTCCGCTGATGAGGACAAA GATATTCTTGGATTCGATGCGCTTGAGCTGGACTATTCAGTTCCATTCCCCCTATCACTGGTAATTAGCCGTAAA ACCGTTCTGCGGTACCAACTTATTTTCCGCCATCTTCTCTCGCTGCGCCATCTCGAGACGTTGTTGGTCACGTCC TGGGCAGACCAGAACAAAACCATCAGCTGGCGGCATAAATCCTCCGATCGACGGCTTGAAATATGGAAACGGCGG GCGTGGAACTTGCGCGCGAAGATGTTGGTGTTTGTTCAGCAGCTTTTGTACTTTTGCACGGCTGAGGTCATTGAG CCCAATTGGGTGGGTCTGATGGATCGTGTCAACAGCGTTGACGCCGACGCGTCGGAGGTGGAGGAAAATTATATG AAGCAGGTCAATCGAACGGTTGATGAGCTGATGCAAGATCATGTGGATTTCTTGGATACCTGTTTGAAGGAGTGC ATGCTCACACAGGCTAAACTGTTGAAGATCCATTCGAAACTGGTGACTTGCTGCACCATGTTTGCTTCCTGGACT GCGGCATCACTTTCACGCGCCTTGGCTTCAGCCGATCCTGACTTGGCTGGAGGAAAAGTCCCTGGCGCTGATGCC AGAGGATATGATCCAACGCGGATTGGAAAACTCGAGGACACACTGAAACGATACGAGGACCATTTCTCGCGCCAT CTCCGCATTTTGATGGACAGCTTGAACTACTTCGCCGCAACGGAGAGTGTGGTGCTCCTGAAGCTTGCACATTCT TTGACCTCTATTAGCCGAGAGGAGAGTAAAGAGGATTGA |
Gene | >Pro_DTO377G3_2|g968.t1 ATGTCTGCCAATGACCGCGCCGCGTATATGAACGCTTCACGACCCCGCGCGGTCTCCAATCGCGTCGATTCCGAA ACTCGCGGAGCATCGCCGTTACAGATCGAGAATAAGGATCCCTTGCGCCGCAGCAGCTCAAATCAAAAACACAGA GCATCCCGAGATCAGAAGAGCATGGCCGATAAGCGCTCAGAACGCATGGTAATCACATCACGGGAAAGGGCAGTG CGAAGGAACCCTGTGAACCCTGTTAAGGAATCTATCAATGCGGCTAGCAGGGGCGATTGGGATAAAACTCGGCCC AGGAAGCCTGTCCAACTTGATGACGGGAATTCCAGTTTCCGAACTGGGGAGAAAGACCTGGCTGATTGTGAGTGC TGCGTCGCAGTTTCTCGTGGAGTGCAATGGATTTGCTGACCATGATTTTTCTCTTTACAGCACCATGGAATCCCC AAGCATCATTGATTCCTCACTCGACAGCTCCCCTCGCATGTCGTGTATCAGTTCCTCCTCTAGCTTCGACGGCTC CGCAGGCCCTTCATCCTCGGCCACTTCGAGAGCTCTCACCCGATGCCCAGGAGGCGGCGATCTTGGAAGACTTGT TGTTCGTGTTCATGGGATTCGAAGGTCAATATGTTCACTACGCTAGCTCATACGACCCATCAATCGAGAAAGACC GCCTCACGGGCCCGATCTTCCAGATAGCCCCAGGCCTGGACCCGACCCTCCGTGATCTCATCCAGTCCATGTTGA AAATGGCTACTCACTACAGTGCCATGGAGGCATTTGTGGAAATTCAAAGTCGCGCTGAGTGTGGTGCTGTCAGTC ACTCACTATGCGCATCTATTCGAAAGCTCCTCAAAGATTACCTGATCCTTATCGCCCAGCTCGAAGGCCAGCTGC TGAACAATCCTACATTTACCTTACACCTTCTCCATCTCTACACAATGCCTACCAGTCAATGTTTATCTCAATTAT ATTCGATGGGCCAGGAACTGTTGCTCAAAAATGGTCTTCTAGATGAGGAGCTCGAGGAGTCGACTGATGACTTCG ATGAGGATGTTGACAATATACTTGAACAACTCAAAGAAGGGGGGGACTTAGTGCCAGGTTCTATGGCCCGCAAGA AAATGTGCAAAGGAGGCAATATTCTCGGACTCCTAACAGGGCGTCTGGCTTCATTCTCGGGTGATCCGATCACTA AAACCTTGCTTCAGACCTTACTGCGTGACGCCAGTCGGCCTTACATGGCTATGCTAAACGAATGGTTGCACCATG GCGGTATTAGAGATCCCCATGCCGAGTTCTTGGTCAAGGAACAAAAATGGATCAAACGCGAGAAACTCGAGGAAG ACTACACGGATGAATATTGGGAGAAACGCTACACGATTCGCGAGAACGAGGTTCCTCCTCAGCTGAAGAGCGTGC AGGATAAAGTTCTGCTGGCTGGAAAGTATCTCAACGTGGTGCGTGAATGTGGTGGTGTCGACGTCAGCAAAGAGG TCAAAGATGTACCGAAGACGCTCGACGATCCACGCTTCTTGGACAACGTAAATTCTGCCTACACCTATGCCAATG CTTCCCTGTTAAATCTTCTTGTCACAAAAAACTCCCTCACTACTCGATTCCGCTCCCTGAAACATTACTTCTTCC TCGATCGCTCTGATTTTTTTTCCTACTTCCTCGAGCTTGGTGCTTCCGAGCTACGAAAACCGGCACGTGCCGTCA ACGAAGGGAAGCTGCAGTCACTGTTGGATATTGTCCTTCGACAGCCTGGCAGCGTTGCAGCACTGGACCCGTTCA AGGAGGATGTCAAGGTGCGGATGAACAAGATCGGCCTCACGAAATGGTTGATGCAGGTTGTGAATGTTTCAGGCG TCAACCAAGAGGGCGCGGAAGCGGAGAAGCAACAAGGTTCTGCTGTCCATTCCGCTGATGAGGACAAAGATATTC TTGGATTCGATGCGCTTGAGCTGGACTATTCAGTTCCATTCCCCCTATCACTGGTAATTAGCCGTAAAACCGTTC TGCGGTACCAACTTATTTTCCGCCATCTTCTCTCGCTGCGCCATCTCGAGACGTTGTTGGTCACGTCCTGGGCAG ACCAGAACAAAACCATCAGCTGGCGGCATAAATCCTCCGATCGACGGCTTGAAATATGGAAACGGCGGGCGTGGA ACTTGCGCGCGAAGATGTTGGTGTTTGTTCAGCAGCTTTTGTACTTTTGCACGGCTGAGGTCATTGAGCCCAATT GGGTGGGTCTGATGGATCGTGTCAACAGCGTTGACGCCGACGCGTCGGAGGTGGAGGAAAATTATATGAAGCAGG TCAATCGAACGGTTGATGAGCTGATGCAAGATCATGTGGATTTCTTGGATACCTGTTTGAAGGAGTGCATGCTCA CACAGGCTAAACTGTTGAAGGTACGTTTATCCATGCAGGCGGTGGTATTCATACTAATAGCTATATAGATCCATT CGAAACTGGTGACTTGCTGCACCATGTTTGCTTCCTGGACTGCGGCATCACTTTCACGCGCCTTGGCTTCAGCCG ATCCTGACTTGGCTGGAGGAAAAGTCCCTGGCGCTGATGCCAGAGGATATGATCCAACGCGGATTGGAAAACTCG AGGACACACTGAAACGATACGAGGACCATTTCTCGCGCCATCTCCGCATTTTGATGGACAGGTGAGTTACACCCT TAAGAAATACATCTGGTTATGTGTTCTAACACGACTATACAGCTTGAACTACTTCGCCGCAACGGAGAGTGTGGT GCTCCTGAAGCTTGCACATTCTTTGACCTCTATTAGCCGAGAGGAGAGTAAAGAGGATTGA |