Fungal Genomics

at Utrecht University

General Properties

Protein IDPro_DTO377G3_2|g9675.t1
Gene name
Locationscaffold_58:40726..42355
Strand+
Gene length (bp)1629
Transcript length (bp)1569
Coding sequence length (bp)1569
Protein length (aa) 523

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF05426 Alginate_lyase Alginate lyase 5.1E-15 75 303

GO

GO Term Description Terminal node
GO:0042597 periplasmic space Yes
GO:0016829 lyase activity Yes
GO:0003824 catalytic activity No
GO:0110165 cellular anatomical entity No
GO:0003674 molecular_function No
GO:0005575 cellular_component No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
Yes 1 - 18 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

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Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Pro_DTO377G3_2|g9675.t1
MVPSLSFVIPFLPLVASFVHPGLLVSESDISRTQKKINASLDPWTTSWNTLTSLSLSDASYTPSAVSVVYRSAWE
DNAANAQLLWHDVAAAFNLGLRWKISRNTSFADAASNILHAWATNLTAIGGGDDKYLTAGLQGYELANAAELLLD
YQPFVDDVLPSVVEMANNIFIPMHYTWLNHEESSEHNILHFFANWELCNVASAMAMAVITDNQTVWDFAVNYFKN
GDGTGAINNAITNIVEEPSTRTLLGQGQESGRDQGHSALDIQLLGVIGQQALNQGEDLFAYNDSRILRGTEYFAR
YNLGNDVPFVPYTNGIVSYTEISNASRGAIRPTWELLYNHYVVLKQLDAPWTTLYLNNSLEYYGGAEGGAGSWGE
GSGHYDGLGWGSLLYHMDESDVVSASSSKAVSSTANPTPSASSATLSLAPSATTTTSGVSTQSSIVSYSTTTEFA
AVSAVVDIETVASSSTIAANSRTSPSFVGSTIPASTSTDLPTAPLESSQKAHHHHQPHHYHVKGQAHVYHVQ*
Coding >Pro_DTO377G3_2|g9675.t1
ATGGTCCCCTCTCTTTCTTTCGTTATCCCTTTTCTCCCCCTTGTAGCAAGTTTTGTGCACCCTGGCCTCCTCGTC
TCTGAAAGCGATATCTCTCGCACCCAGAAAAAGATCAATGCCAGTCTGGATCCATGGACTACATCTTGGAATACC
TTGACAAGCCTCTCATTGTCGGACGCCAGCTACACTCCTTCAGCAGTCAGCGTTGTCTATCGGAGTGCTTGGGAA
GACAATGCCGCAAACGCACAGCTCCTCTGGCATGACGTCGCGGCAGCTTTCAATCTAGGCTTACGCTGGAAGATA
TCCAGGAACACGAGCTTTGCCGATGCCGCTAGCAATATCCTGCATGCATGGGCGACCAATCTCACTGCAATCGGT
GGTGGCGACGACAAGTACCTCACAGCTGGCCTGCAGGGGTATGAACTCGCCAACGCAGCCGAACTCCTTCTTGAC
TATCAGCCCTTCGTGGATGATGTCCTCCCATCTGTCGTGGAAATGGCCAATAACATCTTTATCCCGATGCACTAC
ACCTGGCTGAACCATGAAGAGTCGTCGGAGCATAATATTCTTCATTTCTTCGCCAACTGGGAGTTGTGCAATGTC
GCTTCGGCGATGGCTATGGCTGTCATAACCGACAATCAAACAGTATGGGATTTCGCTGTGAATTACTTCAAGAAC
GGGGATGGAACGGGTGCCATCAACAATGCTATCACCAATATCGTTGAAGAACCTAGTACTAGAACTTTACTCGGC
CAAGGCCAAGAATCCGGTCGTGATCAGGGCCACTCAGCGTTAGACATACAGCTTCTAGGTGTTATCGGGCAGCAG
GCCTTGAACCAAGGAGAGGATTTGTTTGCCTATAACGATAGCCGGATTCTCCGTGGAACGGAGTACTTTGCGCGA
TACAACCTTGGAAACGACGTTCCCTTCGTCCCCTACACGAACGGTATAGTCAGCTACACCGAGATCAGTAATGCC
TCCCGTGGAGCCATCAGACCTACCTGGGAGCTTCTCTACAACCACTATGTCGTGCTGAAGCAATTGGACGCACCT
TGGACCACTCTTTACCTCAACAACTCTCTTGAATATTACGGCGGTGCGGAGGGTGGTGCGGGATCCTGGGGAGAA
GGGTCTGGTCATTACGACGGGTTGGGCTGGGGATCATTGCTCTATCACATGGATGAGTCTGATGTTGTATCTGCA
TCCTCCTCCAAAGCTGTTTCATCTACGGCCAATCCCACACCAAGTGCGTCGTCCGCTACATTGAGCTTGGCTCCT
AGCGCAACGACTACGACTTCTGGCGTATCCACCCAAAGTTCGATTGTTTCATACTCAACCACCACGGAGTTTGCT
GCTGTCTCTGCTGTCGTGGACATCGAAACAGTTGCATCATCATCAACTATTGCAGCCAACAGTAGGACTTCCCCA
TCTTTTGTGGGCAGTACAATTCCAGCCAGCACATCGACAGATTTGCCCACTGCCCCACTTGAGAGCTCGCAGAAA
GCTCATCACCATCATCAGCCACATCATTACCACGTGAAGGGTCAGGCACATGTTTACCATGTACAATAG
Transcript >Pro_DTO377G3_2|g9675.t1
ATGGTCCCCTCTCTTTCTTTCGTTATCCCTTTTCTCCCCCTTGTAGCAAGTTTTGTGCACCCTGGCCTCCTCGTC
TCTGAAAGCGATATCTCTCGCACCCAGAAAAAGATCAATGCCAGTCTGGATCCATGGACTACATCTTGGAATACC
TTGACAAGCCTCTCATTGTCGGACGCCAGCTACACTCCTTCAGCAGTCAGCGTTGTCTATCGGAGTGCTTGGGAA
GACAATGCCGCAAACGCACAGCTCCTCTGGCATGACGTCGCGGCAGCTTTCAATCTAGGCTTACGCTGGAAGATA
TCCAGGAACACGAGCTTTGCCGATGCCGCTAGCAATATCCTGCATGCATGGGCGACCAATCTCACTGCAATCGGT
GGTGGCGACGACAAGTACCTCACAGCTGGCCTGCAGGGGTATGAACTCGCCAACGCAGCCGAACTCCTTCTTGAC
TATCAGCCCTTCGTGGATGATGTCCTCCCATCTGTCGTGGAAATGGCCAATAACATCTTTATCCCGATGCACTAC
ACCTGGCTGAACCATGAAGAGTCGTCGGAGCATAATATTCTTCATTTCTTCGCCAACTGGGAGTTGTGCAATGTC
GCTTCGGCGATGGCTATGGCTGTCATAACCGACAATCAAACAGTATGGGATTTCGCTGTGAATTACTTCAAGAAC
GGGGATGGAACGGGTGCCATCAACAATGCTATCACCAATATCGTTGAAGAACCTAGTACTAGAACTTTACTCGGC
CAAGGCCAAGAATCCGGTCGTGATCAGGGCCACTCAGCGTTAGACATACAGCTTCTAGGTGTTATCGGGCAGCAG
GCCTTGAACCAAGGAGAGGATTTGTTTGCCTATAACGATAGCCGGATTCTCCGTGGAACGGAGTACTTTGCGCGA
TACAACCTTGGAAACGACGTTCCCTTCGTCCCCTACACGAACGGTATAGTCAGCTACACCGAGATCAGTAATGCC
TCCCGTGGAGCCATCAGACCTACCTGGGAGCTTCTCTACAACCACTATGTCGTGCTGAAGCAATTGGACGCACCT
TGGACCACTCTTTACCTCAACAACTCTCTTGAATATTACGGCGGTGCGGAGGGTGGTGCGGGATCCTGGGGAGAA
GGGTCTGGTCATTACGACGGGTTGGGCTGGGGATCATTGCTCTATCACATGGATGAGTCTGATGTTGTATCTGCA
TCCTCCTCCAAAGCTGTTTCATCTACGGCCAATCCCACACCAAGTGCGTCGTCCGCTACATTGAGCTTGGCTCCT
AGCGCAACGACTACGACTTCTGGCGTATCCACCCAAAGTTCGATTGTTTCATACTCAACCACCACGGAGTTTGCT
GCTGTCTCTGCTGTCGTGGACATCGAAACAGTTGCATCATCATCAACTATTGCAGCCAACAGTAGGACTTCCCCA
TCTTTTGTGGGCAGTACAATTCCAGCCAGCACATCGACAGATTTGCCCACTGCCCCACTTGAGAGCTCGCAGAAA
GCTCATCACCATCATCAGCCACATCATTACCACGTGAAGGGTCAGGCACATGTTTACCATGTACAATAG
Gene >Pro_DTO377G3_2|g9675.t1
ATGGTCCCCTCTCTTTCTTTCGTTATCCCTTTTCTCCCCCTTGTAGCAAGTTTTGTGCACCCTGGCCTCCTCGTC
TCTGAAAGCGATATCTCTCGCACCCAGAAAAAGATCAATGCCAGTCTGGATCCATGGACTACATCTTGGAATACC
TTGACAAGCCTCTCATTGTCGGACGCCAGCTACACTCCTTCAGCAGTCAGCGTTGTCTATCGGAGTGCTTGGGAA
GACAATGCCGCAAACGCACAGCTCCTCTGGCATGACGTCGCGGCAGCTTTCAATCTAGGCTTACGCTGGAAGATA
TCCAGGAACACGAGCTTTGCCGATGCCGCTAGCAATATCCTGCATGCATGGGCGACCAATCTCACTGCAATCGGT
GGTGGCGACGACAAGTACCTCACAGCTGGCCTGCAGGGGTATGAACTCGCCAACGCAGCCGAACTCCTTCTTGAC
TATCAGCCCTTCGTGGATGATGTCCTCCCATCTGTCGTGGAAATGGCCAATAACATCTTTATCCCGATGCACTAC
ACCTGGCTGAACCATGAAGAGTCGTCGGAGCATAATATTCTTCATTTCTTCGCCAACTGGGAGTTGTGCAATGTC
GCTTCGGCGATGGCTATGGCTGTCATAACCGACAATCAAACAGTATGGGATTTCGCTGTGAATTACTTCAAGAAC
GGGGATGGAACGGGTGCCATCAACAATGCTATCACCAATATCGTTGAAGAACCTAGTACTAGAACTTTACTCGGC
CAAGGCCAAGAATCCGGTCGTGATCAGGGCCACTCAGCGTTAGACATACAGCTTCTAGGTGTTATCGGGCAGCAG
GCCTTGAACCAAGGAGAGGATTTGTTTGCCTATAACGATAGCCGGATTCTCCGTGGGTAAGTACCATCCAATCAT
CCCAAGGTTTCCGCCTTAGCAATTACTAATATTCGCCCTAGAACGGAGTACTTTGCGCGATACAACCTTGGAAAC
GACGTTCCCTTCGTCCCCTACACGAACGGTATAGTCAGCTACACCGAGATCAGTAATGCCTCCCGTGGAGCCATC
AGACCTACCTGGGAGCTTCTCTACAACCACTATGTCGTGCTGAAGCAATTGGACGCACCTTGGACCACTCTTTAC
CTCAACAACTCTCTTGAATATTACGGCGGTGCGGAGGGTGGTGCGGGATCCTGGGGAGAAGGGTCTGGTCATTAC
GACGGGTTGGGCTGGGGATCATTGCTCTATCACATGGATGAGTCTGATGTTGTATCTGCATCCTCCTCCAAAGCT
GTTTCATCTACGGCCAATCCCACACCAAGTGCGTCGTCCGCTACATTGAGCTTGGCTCCTAGCGCAACGACTACG
ACTTCTGGCGTATCCACCCAAAGTTCGATTGTTTCATACTCAACCACCACGGAGTTTGCTGCTGTCTCTGCTGTC
GTGGACATCGAAACAGTTGCATCATCATCAACTATTGCAGCCAACAGTAGGACTTCCCCATCTTTTGTGGGCAGT
ACAATTCCAGCCAGCACATCGACAGATTTGCCCACTGCCCCACTTGAGAGCTCGCAGAAAGCTCATCACCATCAT
CAGCCACATCATTACCACGTGAAGGGTCAGGCACATGTTTACCATGTACAATAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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