© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g9659.t1 |
| Gene name | |
| Location | scaffold_55:54058..55611 |
| Strand | - |
| Gene length (bp) | 1553 |
| Transcript length (bp) | 1497 |
| Coding sequence length (bp) | 1497 |
| Protein length (aa) | 499 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00149 | Metallophos | Calcineurin-like phosphoesterase | 2.1E-17 | 176 | 401 |
| PF14008 | Metallophos_C | Iron/zinc purple acid phosphatase-like protein C | 2.4E-13 | 423 | 484 |
| PF16656 | Pur_ac_phosph_N | Purple acid Phosphatase, N-terminal domain | 1.3E-12 | 33 | 117 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0046872 | metal ion binding | Yes |
| GO:0003993 | acid phosphatase activity | Yes |
| GO:0016787 | hydrolase activity | Yes |
| GO:0016791 | phosphatase activity | No |
| GO:0005488 | binding | No |
| GO:0043167 | ion binding | No |
| GO:0016788 | hydrolase activity, acting on ester bonds | No |
| GO:0042578 | phosphoric ester hydrolase activity | No |
| GO:0043169 | cation binding | No |
| GO:0003674 | molecular_function | No |
| GO:0003824 | catalytic activity | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 20 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 0.58 | 0.00 | 1.26 |
| 5d_25C | Five days - 25 degrees Celsius | 0.85 | 0.00 | 1.70 |
| 7d_25C | Seven days - 25 degrees Celsius | 0.86 | 0.00 | 1.73 |
| 10d_25C | Ten days - 25 degrees Celsius | 0.30 | 0.00 | 0.74 |
| 7d_15C | Seven days - 15 degrees Celsius | 0.46 | 0.00 | 1.05 |
| 7d_30C | Seven days - 30 degrees Celsius | 1.54 | 0.06 | 3.02 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.633340 | no |
| 3d_25C | 7d_25C | 0.614296 | no |
| 3d_25C | 7d_15C | 1.000000 | no |
| 3d_25C | 7d_30C | 0.118550 | no |
| 3d_25C | 10d_25C | 1.000000 | no |
| 5d_25C | 7d_25C | 0.990703 | no |
| 5d_25C | 7d_15C | 0.397566 | no |
| 5d_25C | 7d_30C | 0.322970 | no |
| 5d_25C | 10d_25C | 0.207981 | no |
| 7d_25C | 7d_15C | 0.381875 | no |
| 7d_25C | 7d_30C | 0.325602 | no |
| 7d_25C | 10d_25C | 0.196488 | no |
| 7d_15C | 7d_30C | 0.060203 | no |
| 7d_15C | 10d_25C | 1.000000 | no |
| 7d_30C | 10d_25C | 0.064657 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g9659.t1 MGGILSLKLLPFVASCAFAGVNYPEIPKDLTTPFQQRLTVYGPNAVSVGWNTYEQLNQSCVNYGLSETNLNTKAC SSSSTTYDPSRTWSNVAVLTGLTPATTYYYKIDSTNSTIGHFLSPRTPGDRTAFTMDVIIDLGVYGKDGFTSKRS TKKDTIPVIEPELNHTTIGRLAETIDDYELVIHPGDFAYADDWYLKFANLLDGKEAYESIIEQFYDQLAPIAGRK LYMASPGNHEADCSEIPYLNGLCPKGQNNFTEFMHRYEKTMPQSFISSSPNPTAQTLARTARSLSNPPFWYSFEY GMAHVVMIDTETDFPNAPSGQGGSAKLNGGPFGTANQQIEFLKADLASVDRSVTPWLIVAGHRPWYSTGGSSNVC SPCQEAFEGLLYQYGVDIGIFGHVHNSQRFMPVVNGTADPNGMEDPKAPMYIVAGGPGNVEGLGSVGSKPAYTEF AYADDYSYSTLRFLDEQHLQVDFVRSSTGEILDSSTLYKEHATDFVDQ* |
| Coding | >Pro_DTO377G3_2|g9659.t1 ATGGGGGGAATTCTATCGCTCAAATTGCTGCCCTTTGTGGCTAGCTGCGCCTTTGCTGGTGTCAATTATCCTGAG ATCCCGAAGGACTTGACTACACCATTCCAGCAACGATTGACAGTCTATGGACCTAATGCTGTGTCGGTTGGTTGG AACACCTATGAACAGCTGAATCAAAGTTGTGTGAATTATGGCTTGTCAGAAACCAACCTGAATACCAAAGCTTGC TCATCCTCGTCGACTACCTACGATCCTTCCCGGACGTGGTCAAATGTTGCAGTCCTAACAGGCCTGACCCCCGCG ACAACCTACTACTACAAGATTGACTCCACCAACTCGACCATAGGCCATTTTCTCAGCCCTCGCACGCCCGGCGAT AGAACTGCATTCACCATGGACGTGATCATTGATCTTGGTGTCTACGGCAAAGACGGCTTCACAAGCAAAAGAAGC ACAAAAAAGGACACTATTCCAGTCATCGAGCCAGAATTGAACCACACCACAATTGGTCGCCTCGCGGAAACAATA GACGACTACGAGCTTGTCATCCACCCAGGCGATTTCGCTTACGCCGACGACTGGTATCTTAAATTCGCAAACCTG CTCGACGGCAAAGAAGCCTACGAGTCTATTATCGAACAATTCTACGACCAACTAGCACCGATCGCAGGCCGCAAG CTCTACATGGCCAGCCCGGGAAACCACGAAGCAGACTGCTCAGAGATTCCATACTTGAACGGCCTCTGCCCAAAA GGCCAGAACAACTTCACCGAGTTCATGCACCGGTACGAGAAAACCATGCCGCAGTCTTTTATTTCGTCGTCACCA AACCCAACGGCCCAAACCCTGGCCCGAACGGCCCGCAGCCTTTCCAACCCACCCTTTTGGTATTCCTTCGAATAC GGCATGGCCCACGTTGTGATGATCGACACCGAAACGGATTTCCCAAATGCACCAAGCGGCCAAGGTGGCTCCGCC AAGCTGAACGGCGGGCCATTTGGCACTGCGAACCAACAGATCGAGTTCCTCAAGGCCGATCTCGCTTCCGTCGAC CGGTCTGTCACACCTTGGCTAATCGTCGCCGGACACAGGCCATGGTACTCAACCGGAGGATCGTCGAACGTCTGC AGTCCCTGCCAAGAGGCGTTTGAGGGCCTGCTTTACCAGTACGGCGTTGACATCGGTATTTTTGGGCATGTGCAC AACTCGCAGCGGTTCATGCCTGTGGTCAATGGTACCGCCGATCCCAACGGTATGGAGGACCCCAAGGCCCCCATG TATATCGTTGCTGGAGGCCCCGGTAATGTTGAGGGTCTGGGCTCTGTTGGCAGTAAGCCTGCTTATACGGAGTTT GCATATGCGGATGACTATAGCTACAGTACGCTTAGGTTTTTGGATGAGCAACACTTGCAAGTTGATTTTGTGAGG TCCTCTACTGGAGAGATCTTGGATTCTAGTACTTTGTACAAGGAACATGCAACGGATTTTGTGGACCAGTAA |
| Transcript | >Pro_DTO377G3_2|g9659.t1 ATGGGGGGAATTCTATCGCTCAAATTGCTGCCCTTTGTGGCTAGCTGCGCCTTTGCTGGTGTCAATTATCCTGAG ATCCCGAAGGACTTGACTACACCATTCCAGCAACGATTGACAGTCTATGGACCTAATGCTGTGTCGGTTGGTTGG AACACCTATGAACAGCTGAATCAAAGTTGTGTGAATTATGGCTTGTCAGAAACCAACCTGAATACCAAAGCTTGC TCATCCTCGTCGACTACCTACGATCCTTCCCGGACGTGGTCAAATGTTGCAGTCCTAACAGGCCTGACCCCCGCG ACAACCTACTACTACAAGATTGACTCCACCAACTCGACCATAGGCCATTTTCTCAGCCCTCGCACGCCCGGCGAT AGAACTGCATTCACCATGGACGTGATCATTGATCTTGGTGTCTACGGCAAAGACGGCTTCACAAGCAAAAGAAGC ACAAAAAAGGACACTATTCCAGTCATCGAGCCAGAATTGAACCACACCACAATTGGTCGCCTCGCGGAAACAATA GACGACTACGAGCTTGTCATCCACCCAGGCGATTTCGCTTACGCCGACGACTGGTATCTTAAATTCGCAAACCTG CTCGACGGCAAAGAAGCCTACGAGTCTATTATCGAACAATTCTACGACCAACTAGCACCGATCGCAGGCCGCAAG CTCTACATGGCCAGCCCGGGAAACCACGAAGCAGACTGCTCAGAGATTCCATACTTGAACGGCCTCTGCCCAAAA GGCCAGAACAACTTCACCGAGTTCATGCACCGGTACGAGAAAACCATGCCGCAGTCTTTTATTTCGTCGTCACCA AACCCAACGGCCCAAACCCTGGCCCGAACGGCCCGCAGCCTTTCCAACCCACCCTTTTGGTATTCCTTCGAATAC GGCATGGCCCACGTTGTGATGATCGACACCGAAACGGATTTCCCAAATGCACCAAGCGGCCAAGGTGGCTCCGCC AAGCTGAACGGCGGGCCATTTGGCACTGCGAACCAACAGATCGAGTTCCTCAAGGCCGATCTCGCTTCCGTCGAC CGGTCTGTCACACCTTGGCTAATCGTCGCCGGACACAGGCCATGGTACTCAACCGGAGGATCGTCGAACGTCTGC AGTCCCTGCCAAGAGGCGTTTGAGGGCCTGCTTTACCAGTACGGCGTTGACATCGGTATTTTTGGGCATGTGCAC AACTCGCAGCGGTTCATGCCTGTGGTCAATGGTACCGCCGATCCCAACGGTATGGAGGACCCCAAGGCCCCCATG TATATCGTTGCTGGAGGCCCCGGTAATGTTGAGGGTCTGGGCTCTGTTGGCAGTAAGCCTGCTTATACGGAGTTT GCATATGCGGATGACTATAGCTACAGTACGCTTAGGTTTTTGGATGAGCAACACTTGCAAGTTGATTTTGTGAGG TCCTCTACTGGAGAGATCTTGGATTCTAGTACTTTGTACAAGGAACATGCAACGGATTTTGTGGACCAGTAA |
| Gene | >Pro_DTO377G3_2|g9659.t1 ATGGGGGGAATTCTATCGCTCAAATTGCTGCCCTTTGTGGCTAGCTGCGCCTTTGCTGGTGTCAATTATCCTGAG ATCCCGAAGGACTTGACTACACCATTCCAGCAACGATTGACAGTCTATGGACCTAATGGTAAGAAGACCGGTAGA TATAGTGGGCTTGGAGAGGACTGACTTATTCATCTTTAGCTGTGTCGGTTGGTTGGAACACCTATGAACAGCTGA ATCAAAGTTGTGTGAATTATGGCTTGTCAGAAACCAACCTGAATACCAAAGCTTGCTCATCCTCGTCGACTACCT ACGATCCTTCCCGGACGTGGTCAAATGTTGCAGTCCTAACAGGCCTGACCCCCGCGACAACCTACTACTACAAGA TTGACTCCACCAACTCGACCATAGGCCATTTTCTCAGCCCTCGCACGCCCGGCGATAGAACTGCATTCACCATGG ACGTGATCATTGATCTTGGTGTCTACGGCAAAGACGGCTTCACAAGCAAAAGAAGCACAAAAAAGGACACTATTC CAGTCATCGAGCCAGAATTGAACCACACCACAATTGGTCGCCTCGCGGAAACAATAGACGACTACGAGCTTGTCA TCCACCCAGGCGATTTCGCTTACGCCGACGACTGGTATCTTAAATTCGCAAACCTGCTCGACGGCAAAGAAGCCT ACGAGTCTATTATCGAACAATTCTACGACCAACTAGCACCGATCGCAGGCCGCAAGCTCTACATGGCCAGCCCGG GAAACCACGAAGCAGACTGCTCAGAGATTCCATACTTGAACGGCCTCTGCCCAAAAGGCCAGAACAACTTCACCG AGTTCATGCACCGGTACGAGAAAACCATGCCGCAGTCTTTTATTTCGTCGTCACCAAACCCAACGGCCCAAACCC TGGCCCGAACGGCCCGCAGCCTTTCCAACCCACCCTTTTGGTATTCCTTCGAATACGGCATGGCCCACGTTGTGA TGATCGACACCGAAACGGATTTCCCAAATGCACCAAGCGGCCAAGGTGGCTCCGCCAAGCTGAACGGCGGGCCAT TTGGCACTGCGAACCAACAGATCGAGTTCCTCAAGGCCGATCTCGCTTCCGTCGACCGGTCTGTCACACCTTGGC TAATCGTCGCCGGACACAGGCCATGGTACTCAACCGGAGGATCGTCGAACGTCTGCAGTCCCTGCCAAGAGGCGT TTGAGGGCCTGCTTTACCAGTACGGCGTTGACATCGGTATTTTTGGGCATGTGCACAACTCGCAGCGGTTCATGC CTGTGGTCAATGGTACCGCCGATCCCAACGGTATGGAGGACCCCAAGGCCCCCATGTATATCGTTGCTGGAGGCC CCGGTAATGTTGAGGGTCTGGGCTCTGTTGGCAGTAAGCCTGCTTATACGGAGTTTGCATATGCGGATGACTATA GCTACAGTACGCTTAGGTTTTTGGATGAGCAACACTTGCAAGTTGATTTTGTGAGGTCCTCTACTGGAGAGATCT TGGATTCTAGTACTTTGTACAAGGAACATGCAACGGATTTTGTGGACCAGTAA |