© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g9639.t1 |
| Gene name | |
| Location | scaffold_54:64317..65283 |
| Strand | + |
| Gene length (bp) | 966 |
| Transcript length (bp) | 894 |
| Coding sequence length (bp) | 894 |
| Protein length (aa) | 298 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF02548 | Pantoate_transf | Ketopantoate hydroxymethyltransferase | 3.2E-105 | 11 | 270 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0003864 | 3-methyl-2-oxobutanoate hydroxymethyltransferase activity | Yes |
| GO:0015940 | pantothenate biosynthetic process | Yes |
| GO:0034641 | cellular nitrogen compound metabolic process | No |
| GO:0009058 | biosynthetic process | No |
| GO:0046394 | carboxylic acid biosynthetic process | No |
| GO:0006766 | vitamin metabolic process | No |
| GO:0008152 | metabolic process | No |
| GO:0016740 | transferase activity | No |
| GO:0006082 | organic acid metabolic process | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0016741 | transferase activity, transferring one-carbon groups | No |
| GO:0008150 | biological_process | No |
| GO:1901566 | organonitrogen compound biosynthetic process | No |
| GO:0019752 | carboxylic acid metabolic process | No |
| GO:0009110 | vitamin biosynthetic process | No |
| GO:0043603 | cellular amide metabolic process | No |
| GO:0015939 | pantothenate metabolic process | No |
| GO:0044271 | cellular nitrogen compound biosynthetic process | No |
| GO:0006575 | cellular modified amino acid metabolic process | No |
| GO:0006767 | water-soluble vitamin metabolic process | No |
| GO:0044283 | small molecule biosynthetic process | No |
| GO:1901576 | organic substance biosynthetic process | No |
| GO:0042398 | cellular modified amino acid biosynthetic process | No |
| GO:0009987 | cellular process | No |
| GO:1901564 | organonitrogen compound metabolic process | No |
| GO:0044237 | cellular metabolic process | No |
| GO:0043436 | oxoacid metabolic process | No |
| GO:0042364 | water-soluble vitamin biosynthetic process | No |
| GO:0043604 | amide biosynthetic process | No |
| GO:0003824 | catalytic activity | No |
| GO:0016742 | hydroxymethyl-, formyl- and related transferase activity | No |
| GO:0072330 | monocarboxylic acid biosynthetic process | No |
| GO:0016053 | organic acid biosynthetic process | No |
| GO:0044249 | cellular biosynthetic process | No |
| GO:0032787 | monocarboxylic acid metabolic process | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:0044281 | small molecule metabolic process | No |
| GO:0003674 | molecular_function | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 62 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 20.21 | 8.85 | 31.57 |
| 5d_25C | Five days - 25 degrees Celsius | 14.62 | 5.78 | 23.47 |
| 7d_25C | Seven days - 25 degrees Celsius | 16.93 | 7.04 | 26.81 |
| 10d_25C | Ten days - 25 degrees Celsius | 13.82 | 5.18 | 22.47 |
| 7d_15C | Seven days - 15 degrees Celsius | 19.77 | 8.45 | 31.08 |
| 7d_30C | Seven days - 30 degrees Celsius | 13.74 | 5.29 | 22.19 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.373222 | no |
| 3d_25C | 7d_25C | 0.656497 | no |
| 3d_25C | 7d_15C | 0.963673 | no |
| 3d_25C | 7d_30C | 0.260662 | no |
| 3d_25C | 10d_25C | 0.270785 | no |
| 5d_25C | 7d_25C | 0.741215 | no |
| 5d_25C | 7d_15C | 0.408258 | no |
| 5d_25C | 7d_30C | 0.904444 | no |
| 5d_25C | 10d_25C | 0.913783 | no |
| 7d_25C | 7d_15C | 0.703919 | no |
| 7d_25C | 7d_30C | 0.610954 | no |
| 7d_25C | 10d_25C | 0.623514 | no |
| 7d_15C | 7d_30C | 0.298033 | no |
| 7d_15C | 10d_25C | 0.309666 | no |
| 7d_30C | 10d_25C | 0.991294 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g9639.t1 MGSTTTSTRKKVTIQTIQNLYKKNEPITVLTASDFPSGHVADTAGMEIVLVGDSLAMVAMGMEDTNEVTMDEMLL HCRSVNRAVKSAFTIADLPMGSYETTPEKALTSAIRMVKEGGMKGVKLEGGAEMASTIRKISQAGIPVMAHIGLT PQRQHSLGGFRVQGKSAAGAVKLLRDALAVQKAGACMVLIEAVPPEIAGIITRRLSVPTIGIGSGNGCSGQVLVQ VDMLGNFPEGRFLPKFVKTYADVWGEARRGIEAYREEVKNRAFPSVEYTYGVSKEVLEEFEKAVDEVAENEE* |
| Coding | >Pro_DTO377G3_2|g9639.t1 ATGGGCTCAACAACCACCAGCACACGCAAAAAAGTAACAATCCAAACCATCCAAAACCTCTACAAAAAGAACGAA CCCATCACAGTCCTTACAGCATCCGACTTCCCCAGTGGCCATGTCGCGGACACAGCCGGAATGGAGATCGTGCTC GTAGGCGACAGCCTCGCAATGGTCGCAATGGGCATGGAAGACACAAACGAAGTAACAATGGACGAGATGCTCCTC CACTGCCGCAGCGTAAACCGTGCTGTCAAGAGCGCCTTCACAATCGCAGACCTACCAATGGGCTCATACGAAACC ACCCCAGAAAAGGCACTTACATCGGCAATCCGGATGGTGAAAGAAGGCGGGATGAAGGGCGTGAAACTCGAAGGC GGGGCGGAGATGGCGTCTACGATCCGCAAGATCTCACAAGCGGGGATCCCCGTCATGGCGCACATCGGGCTAACG CCGCAGCGGCAGCACTCGCTGGGCGGGTTCCGAGTCCAGGGCAAGTCAGCCGCGGGCGCTGTGAAACTGCTGCGG GATGCATTGGCTGTGCAGAAAGCCGGTGCTTGTATGGTTCTTATTGAGGCTGTGCCGCCTGAGATTGCGGGTATT ATTACGCGGCGACTGAGCGTGCCGACTATTGGGATTGGGTCTGGGAATGGGTGTTCTGGACAGGTGCTTGTGCAG GTTGATATGTTAGGGAATTTCCCGGAGGGGAGGTTCTTGCCGAAGTTTGTTAAGACGTATGCGGATGTTTGGGGG GAGGCGAGGAGGGGGATTGAGGCTTATAGGGAGGAGGTTAAGAATAGGGCTTTTCCTTCGGTGGAGTATACCTAT GGTGTTTCTAAGGAGGTGTTAGAGGAGTTTGAGAAGGCTGTTGATGAGGTTGCGGAGAATGAGGAGTAA |
| Transcript | >Pro_DTO377G3_2|g9639.t1 ATGGGCTCAACAACCACCAGCACACGCAAAAAAGTAACAATCCAAACCATCCAAAACCTCTACAAAAAGAACGAA CCCATCACAGTCCTTACAGCATCCGACTTCCCCAGTGGCCATGTCGCGGACACAGCCGGAATGGAGATCGTGCTC GTAGGCGACAGCCTCGCAATGGTCGCAATGGGCATGGAAGACACAAACGAAGTAACAATGGACGAGATGCTCCTC CACTGCCGCAGCGTAAACCGTGCTGTCAAGAGCGCCTTCACAATCGCAGACCTACCAATGGGCTCATACGAAACC ACCCCAGAAAAGGCACTTACATCGGCAATCCGGATGGTGAAAGAAGGCGGGATGAAGGGCGTGAAACTCGAAGGC GGGGCGGAGATGGCGTCTACGATCCGCAAGATCTCACAAGCGGGGATCCCCGTCATGGCGCACATCGGGCTAACG CCGCAGCGGCAGCACTCGCTGGGCGGGTTCCGAGTCCAGGGCAAGTCAGCCGCGGGCGCTGTGAAACTGCTGCGG GATGCATTGGCTGTGCAGAAAGCCGGTGCTTGTATGGTTCTTATTGAGGCTGTGCCGCCTGAGATTGCGGGTATT ATTACGCGGCGACTGAGCGTGCCGACTATTGGGATTGGGTCTGGGAATGGGTGTTCTGGACAGGTGCTTGTGCAG GTTGATATGTTAGGGAATTTCCCGGAGGGGAGGTTCTTGCCGAAGTTTGTTAAGACGTATGCGGATGTTTGGGGG GAGGCGAGGAGGGGGATTGAGGCTTATAGGGAGGAGGTTAAGAATAGGGCTTTTCCTTCGGTGGAGTATACCTAT GGTGTTTCTAAGGAGGTGTTAGAGGAGTTTGAGAAGGCTGTTGATGAGGTTGCGGAGAATGAGGAGTAA |
| Gene | >Pro_DTO377G3_2|g9639.t1 ATGGGCTCAACAACCACCAGCACACGCAAAAAAGTAACAATCCAAACCATCCAAAACCTCTACAAAAAGAACGAA CCCATCACAGTCCTTACAGCATCCGACTTCCCCAGTGGCCATGTCGCGGACACAGCCGGAATGGAGATCGTGCTC GTAGGCGACAGCCTCGCAATGGTCGCAATGGGCATGGAAGACACAAACGAAGTAACAATGGACGAGATGCTCCTC CACTGCCGCAGCGTAAACCGTGCTGTCAAGAGCGCCTTCACAGTAAGTATATCCATGCATACATATACAATGCCT ACGCCCGGCCAAGTTACCACATCTCACAACTCGCAATAGATCGCAGACCTACCAATGGGCTCATACGAAACCACC CCAGAAAAGGCACTTACATCGGCAATCCGGATGGTGAAAGAAGGCGGGATGAAGGGCGTGAAACTCGAAGGCGGG GCGGAGATGGCGTCTACGATCCGCAAGATCTCACAAGCGGGGATCCCCGTCATGGCGCACATCGGGCTAACGCCG CAGCGGCAGCACTCGCTGGGCGGGTTCCGAGTCCAGGGCAAGTCAGCCGCGGGCGCTGTGAAACTGCTGCGGGAT GCATTGGCTGTGCAGAAAGCCGGTGCTTGTATGGTTCTTATTGAGGCTGTGCCGCCTGAGATTGCGGGTATTATT ACGCGGCGACTGAGCGTGCCGACTATTGGGATTGGGTCTGGGAATGGGTGTTCTGGACAGGTGCTTGTGCAGGTT GATATGTTAGGGAATTTCCCGGAGGGGAGGTTCTTGCCGAAGTTTGTTAAGACGTATGCGGATGTTTGGGGGGAG GCGAGGAGGGGGATTGAGGCTTATAGGGAGGAGGTTAAGAATAGGGCTTTTCCTTCGGTGGAGTATACCTATGGT GTTTCTAAGGAGGTGTTAGAGGAGTTTGAGAAGGCTGTTGATGAGGTTGCGGAGAATGAGGAGTAA |