Fungal Genomics

at Utrecht University

General Properties

Protein IDPro_DTO377G3_2|g9634.t1
Gene name
Locationscaffold_54:52472..53599
Strand+
Gene length (bp)1127
Transcript length (bp)897
Coding sequence length (bp)897
Protein length (aa) 299

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PFAM Domains

(None)

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
Yes 1 - 22 0.45

Transmembrane Domains

Domain # Start End Length
1 4 21 17
2 84 106 22
3 137 159 22
4 168 187 19
5 202 224 22

Transcription Factor Class

(None)

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
3d_25C Three days - 25 degrees Celsius 0.14 0.0 0.45
5d_25C Five days - 25 degrees Celsius 0.25 0.0 0.70
7d_25C Seven days - 25 degrees Celsius 0.29 0.0 0.78
10d_25C Ten days - 25 degrees Celsius 0.12 0.0 0.38
7d_15C Seven days - 15 degrees Celsius 0.28 0.0 0.72
7d_30C Seven days - 30 degrees Celsius 0.55 0.0 1.34

Differential expression

Label1 Label2 Q-value Significant difference
3d_25C 5d_25C 1.0 no
3d_25C 7d_25C 1.0 no
3d_25C 7d_15C 1.0 no
3d_25C 7d_30C 1.0 no
3d_25C 10d_25C 1.0 no
5d_25C 7d_25C 1.0 no
5d_25C 7d_15C 1.0 no
5d_25C 7d_30C 1.0 no
5d_25C 10d_25C 1.0 no
7d_25C 7d_15C 1.0 no
7d_25C 7d_30C 1.0 no
7d_25C 10d_25C 1.0 no
7d_15C 7d_30C 1.0 no
7d_15C 10d_25C 1.0 no
7d_30C 10d_25C 1.0 no

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Pro_DTO377G3_2|g9634.t1
MGAILCAVIRLALVHVILIWGTNNMSGTFRRTHVFTPEDIRRREIASKFVLTNRVFYNSYLWLQKLVLLDTYRRL
LRQLRWEKVTMISYIGIFAATYVTVQTVTFTECDPISHYWIVLPDPGKCCQAQLQLIVLVSSGVLNVITDIMLIA
LPIPILVLVKRSAVEKIQLAVLFAVGLFIVAITIVRLPQNVKNPTVQVNRTTWASVELLAAAIVANAPVLYGLLK
GRSQRSKYAASGAGSTGPSWQGLQKRSANELELELQRISHSVGGPVLGSKISSSHYLEIDGGSSQSLTRSLDK*
Coding >Pro_DTO377G3_2|g9634.t1
ATGGGAGCGATTCTCTGTGCTGTCATACGCCTCGCCTTGGTTCATGTTATTCTCATCTGGGGAACCAACAATATG
TCTGGCACATTCAGACGCACGCACGTTTTTACCCCCGAGGACATTCGTCGTAGAGAGATCGCGAGCAAATTCGTG
CTCACCAATCGAGTGTTCTATAATTCATATCTCTGGTTGCAAAAGTTGGTTCTGCTTGATACCTATCGCAGACTG
CTCAGGCAACTTCGCTGGGAGAAGGTCACGATGATCTCCTATATTGGTATATTCGCAGCGACGTATGTAACCGTA
CAGACTGTGACTTTCACGGAGTGTGATCCAATCAGTCATTACTGGATCGTATTACCGGATCCTGGCAAATGCTGC
CAGGCACAGCTCCAATTGATCGTCCTCGTTTCCTCAGGTGTATTGAATGTCATCACCGATATTATGCTTATCGCC
TTGCCGATTCCAATCCTGGTTCTGGTTAAACGATCCGCTGTTGAAAAAATCCAGCTAGCGGTCCTCTTCGCCGTC
GGTCTCTTCATCGTCGCAATCACCATCGTTAGACTACCTCAAAACGTCAAAAATCCCACTGTACAAGTGAACAGA
ACGACTTGGGCATCCGTCGAGTTGCTCGCTGCCGCTATCGTAGCCAACGCTCCGGTTCTGTACGGACTTCTGAAG
GGACGGAGCCAAAGGTCCAAGTACGCCGCATCAGGAGCCGGATCAACTGGGCCGTCGTGGCAGGGACTTCAAAAG
AGGTCGGCAAACGAGCTCGAATTAGAACTGCAACGAATCAGTCACAGTGTGGGAGGGCCTGTTCTCGGTTCAAAG
ATATCATCCAGCCATTATTTGGAGATCGATGGCGGGAGTAGTCAGTCGTTGACTCGAAGCCTAGATAAGTAG
Transcript >Pro_DTO377G3_2|g9634.t1
ATGGGAGCGATTCTCTGTGCTGTCATACGCCTCGCCTTGGTTCATGTTATTCTCATCTGGGGAACCAACAATATG
TCTGGCACATTCAGACGCACGCACGTTTTTACCCCCGAGGACATTCGTCGTAGAGAGATCGCGAGCAAATTCGTG
CTCACCAATCGAGTGTTCTATAATTCATATCTCTGGTTGCAAAAGTTGGTTCTGCTTGATACCTATCGCAGACTG
CTCAGGCAACTTCGCTGGGAGAAGGTCACGATGATCTCCTATATTGGTATATTCGCAGCGACGTATGTAACCGTA
CAGACTGTGACTTTCACGGAGTGTGATCCAATCAGTCATTACTGGATCGTATTACCGGATCCTGGCAAATGCTGC
CAGGCACAGCTCCAATTGATCGTCCTCGTTTCCTCAGGTGTATTGAATGTCATCACCGATATTATGCTTATCGCC
TTGCCGATTCCAATCCTGGTTCTGGTTAAACGATCCGCTGTTGAAAAAATCCAGCTAGCGGTCCTCTTCGCCGTC
GGTCTCTTCATCGTCGCAATCACCATCGTTAGACTACCTCAAAACGTCAAAAATCCCACTGTACAAGTGAACAGA
ACGACTTGGGCATCCGTCGAGTTGCTCGCTGCCGCTATCGTAGCCAACGCTCCGGTTCTGTACGGACTTCTGAAG
GGACGGAGCCAAAGGTCCAAGTACGCCGCATCAGGAGCCGGATCAACTGGGCCGTCGTGGCAGGGACTTCAAAAG
AGGTCGGCAAACGAGCTCGAATTAGAACTGCAACGAATCAGTCACAGTGTGGGAGGGCCTGTTCTCGGTTCAAAG
ATATCATCCAGCCATTATTTGGAGATCGATGGCGGGAGTAGTCAGTCGTTGACTCGAAGCCTAGATAAGTAG
Gene >Pro_DTO377G3_2|g9634.t1
ATGGGAGCGATTCTCTGTGCTGTCATACGCCTCGCCTTGGTTCATGTTATTCTCATCTGGGGAACCAACAATATG
TCTGGCACATTCAGACGCACGCACGTTTTTACCCCCGAGGACATTCGTCGTAGAGAGATCGCGAGCAAATTCGTG
CTCACCAATCGAGTGTTCTATAATTCATAGTACGTGAGTTAAACGGAATTCAAGGTCGGCTATTTCTCTTTCTCA
TATTTCTTTTAGTCTCTGGTTGCAAAAGTTGGTTCTGCTTGATACCTATCGCAGACTGCTCAGGCAACTTCGCTG
GGAGAAGGTCACGATGATCTCCTATATTGGTATATTCGCAGCGACGTATGTAACCGTACAGACTGTGACTTTCAC
GGAGTGTGATCCAATCAGTCATTACTGGATCGTATTACCGGATCCTGGTATTTCTTTCCCTCTTCTAATTTCTCT
CTTATTTTCGTGTTTCCTTGAACCTTCTAACCAATACAGGCAAATGCTGCCAGGCACAGCTCCAATTGATCGTCC
TCGGTATGCTTCCAGTCGGAAAGATCGGTTCAATGTAATACCTCTAACATTCTAGTTTCCTCAGGTGTATTGAAT
GTCATCACCGATATTATGCTTATCGCCTTGCCGATTCCAATCCTGGTTCTGGTTAAACGATCCGCTGTTGAGTAA
GTCTACCCATATCACCATATGAATTTCGTTGACGAGCTCTCTCCGTTAGAAAAATCCAGCTAGCGGTCCTCTTCG
CCGTCGGTCTCTTCATCGTCGCAATCACCATCGTTAGACTACCTCAAAACGTCAAAAATCCCACTGTACAAGTGA
ACAGAACGACTTGGGCATCCGTCGAGTTGCTCGCTGCCGCTATCGTAGCCAACGCTCCGGTTCTGTACGGACTTC
TGAAGGGACGGAGCCAAAGGTCCAAGTACGCCGCATCAGGAGCCGGATCAACTGGGCCGTCGTGGCAGGGACTTC
AAAAGAGGTCGGCAAACGAGCTCGAATTAGAACTGCAACGAATCAGTCACAGTGTGGGAGGGCCTGTTCTCGGTT
CAAAGATATCATCCAGCCATTATTTGGAGATCGATGGCGGGAGTAGTCAGTCGTTGACTCGAAGCCTAGATAAGT
AG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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