© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g9627.t1 |
| Gene name | |
| Location | scaffold_54:37330..38467 |
| Strand | + |
| Gene length (bp) | 1137 |
| Transcript length (bp) | 855 |
| Coding sequence length (bp) | 855 |
| Protein length (aa) | 285 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 16 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 0.69 | 0.0 | 1.63 |
| 5d_25C | Five days - 25 degrees Celsius | 0.56 | 0.0 | 1.31 |
| 7d_25C | Seven days - 25 degrees Celsius | 0.41 | 0.0 | 1.03 |
| 10d_25C | Ten days - 25 degrees Celsius | 0.42 | 0.0 | 1.07 |
| 7d_15C | Seven days - 15 degrees Celsius | 0.97 | 0.0 | 2.09 |
| 7d_30C | Seven days - 30 degrees Celsius | 0.86 | 0.0 | 1.97 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 1.000000 | no |
| 3d_25C | 7d_25C | 1.000000 | no |
| 3d_25C | 7d_15C | 0.713337 | no |
| 3d_25C | 7d_30C | 0.845780 | no |
| 3d_25C | 10d_25C | 1.000000 | no |
| 5d_25C | 7d_25C | 1.000000 | no |
| 5d_25C | 7d_15C | 0.500566 | no |
| 5d_25C | 7d_30C | 0.658774 | no |
| 5d_25C | 10d_25C | 1.000000 | no |
| 7d_25C | 7d_15C | 0.298033 | no |
| 7d_25C | 7d_30C | 0.427906 | no |
| 7d_25C | 10d_25C | 1.000000 | no |
| 7d_15C | 7d_30C | 0.908740 | no |
| 7d_15C | 10d_25C | 0.309493 | no |
| 7d_30C | 10d_25C | 0.440515 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g9627.t1 MFPIAVLALVATAQAHTVAWTKGMYCSGGPDLSTVNLNTNTAVGPLYNLAKEDWWFQHERGCDAAPPQDGEVLEL PAGGSFTVELAHNRAQTTLSYGGQYASDWPDGKDHPEDWAGPGSPPDCIQDDGAMHTNNQSMAAGTAFAISYQSD LADVTIDNLAVFTVLEHTPWKRIATYEVPADLPACPEGGCTCAWLWVPNGCGQPNMYMAGYKCNVTGSTSSKQVA PAQVAAYCEDDSTKCVKGAKQMIAFNQQTGNNVQVPNGKTPMYNTAWGWESGAQNDIFV* |
| Coding | >Pro_DTO377G3_2|g9627.t1 ATGTTTCCCATCGCCGTTTTAGCACTGGTTGCTACCGCCCAGGCACACACAGTCGCCTGGACCAAAGGCATGTAC TGCTCTGGGGGCCCTGATCTTTCTACCGTCAACCTCAATACCAACACAGCAGTGGGGCCCCTTTACAACCTCGCC AAGGAGGACTGGTGGTTCCAACACGAACGTGGATGCGATGCAGCACCGCCGCAGGACGGCGAGGTTCTCGAACTC CCTGCTGGTGGAAGCTTCACCGTCGAGCTCGCCCATAACCGGGCGCAGACTACACTGTCATACGGTGGACAGTAC GCCTCTGATTGGCCGGATGGAAAGGATCACCCAGAAGACTGGGCAGGTCCTGGAAGTCCGCCAGACTGCATCCAG GATGACGGTGCAATGCACACCAACAACCAATCCATGGCTGCTGGTACCGCGTTTGCGATCAGCTATCAGTCAGAT CTAGCCGATGTCACAATCGACAACTTGGCCGTATTCACGGTCTTGGAGCACACCCCGTGGAAACGTATCGCTACC TATGAAGTTCCAGCGGATCTTCCTGCCTGCCCTGAGGGTGGCTGCACCTGTGCTTGGCTCTGGGTGCCGAACGGC TGCGGACAACCTAACATGTACATGGCTGGCTACAAGTGCAATGTGACGGGCTCAACATCATCCAAGCAGGTTGCA CCTGCTCAAGTCGCGGCTTATTGCGAAGATGACTCGACCAAGTGTGTCAAGGGCGCCAAGCAGATGATTGCTTTC AACCAACAAACCGGAAACAACGTTCAAGTGCCCAATGGCAAGACACCGATGTACAACACGGCCTGGGGTTGGGAA TCAGGTGCCCAAAATGATATTTTCGTGTGA |
| Transcript | >Pro_DTO377G3_2|g9627.t1 ATGTTTCCCATCGCCGTTTTAGCACTGGTTGCTACCGCCCAGGCACACACAGTCGCCTGGACCAAAGGCATGTAC TGCTCTGGGGGCCCTGATCTTTCTACCGTCAACCTCAATACCAACACAGCAGTGGGGCCCCTTTACAACCTCGCC AAGGAGGACTGGTGGTTCCAACACGAACGTGGATGCGATGCAGCACCGCCGCAGGACGGCGAGGTTCTCGAACTC CCTGCTGGTGGAAGCTTCACCGTCGAGCTCGCCCATAACCGGGCGCAGACTACACTGTCATACGGTGGACAGTAC GCCTCTGATTGGCCGGATGGAAAGGATCACCCAGAAGACTGGGCAGGTCCTGGAAGTCCGCCAGACTGCATCCAG GATGACGGTGCAATGCACACCAACAACCAATCCATGGCTGCTGGTACCGCGTTTGCGATCAGCTATCAGTCAGAT CTAGCCGATGTCACAATCGACAACTTGGCCGTATTCACGGTCTTGGAGCACACCCCGTGGAAACGTATCGCTACC TATGAAGTTCCAGCGGATCTTCCTGCCTGCCCTGAGGGTGGCTGCACCTGTGCTTGGCTCTGGGTGCCGAACGGC TGCGGACAACCTAACATGTACATGGCTGGCTACAAGTGCAATGTGACGGGCTCAACATCATCCAAGCAGGTTGCA CCTGCTCAAGTCGCGGCTTATTGCGAAGATGACTCGACCAAGTGTGTCAAGGGCGCCAAGCAGATGATTGCTTTC AACCAACAAACCGGAAACAACGTTCAAGTGCCCAATGGCAAGACACCGATGTACAACACGGCCTGGGGTTGGGAA TCAGGTGCCCAAAATGATATTTTCGTGTGA |
| Gene | >Pro_DTO377G3_2|g9627.t1 ATGTTTCCCATCGCCGTTTTAGCACTGGTTGCTACCGCCCAGGCACACACAGTCGCCTGGACCAAAGGCATGTAC TGCTCTGGGGGCCCTGATCTTTCTACCGTCAACCTCAATACCAACACAGCAGTGGGGCCCCTTTACAACCTCGCC AAGGAGGACTGGTGGTTCCAACACGAACGTGGATGCGATGCAGCACCGCCGCAGGACGGCGAGGTTCTCGAACTC CCTGCTGGTGGAAGCTTCACCGTCGAGCTCGCCCATAACCGGGCGCAGACTACACTGTCATACGGTGGACAGTAC GCCTCTGATTGGCCGGATGGAAAGGATCACCCAGAAGACTGGGCAGGTCCTGGAAGTCCGCCAGACTGCATCCAG GATGACGGTGCAATGCACACCAACAACCAATCCATGGCTGCTGGTACCGCGTTTGCGATCAGCTATCAGTCAGAT CTAGCCGATGTCACAATCGACAACTTGGCCGTATTCACGGTCTTGGAGCAGTAAGTATCTTTCAAGAGATGGGTG CGTGAAATGATTGAAGTTCTAACCTACATCTTAAGCACCCCGTGGAAACGTATCGCTACCTATGAAGTTCCAGCG GATCTTCCTGCCTGCCCTGAGGGTGGCTGCACCTGTGCTTGGCTCTGGGTAAGTGGATGGATCAAGTATACCACG ATATAAACTAACGCATTTGCAGGTGCCGAACGGCTGCGGACAACCTAACATGCAAGTATCTGTTGTCACAGTGTA GGATTTTGACTGCTAACTCGAAAACTAGGTACATGGCTGGCTACAAGTGCAATGTGACGGGCTCAACATCATCCA AGCAGGTTGCACCTGCTCAAGTCGCGGCTTATTGCGAAGATGACTCGACCAAGTGTGTCAAGGGCGCCAAGCAGA TGATTGCTTTCAACCGTAAGATATTTGAATCTTTAGTCGCACTTTTTTATACAGTTGACTGACTCGAGCAGAACA AACCGGAAACAACGTTCAAGTGCCCAATGGCAAGACACCGATGTACAACACGGCCTGGGGTTGGGAATCAGGTAT GTGTTCATTCCGGACGACTCTTCAGCAATGATAAACTAATGACAAATTCTTACATCGACAGGTGCCCAAAATGAT ATTTTCGTGTGA |