Fungal Genomics

at Utrecht University

General Properties

Protein IDPro_DTO377G3_2|g9627.t1
Gene name
Locationscaffold_54:37330..38467
Strand+
Gene length (bp)1137
Transcript length (bp)855
Coding sequence length (bp)855
Protein length (aa) 285

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PFAM Domains

(None)

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
Yes 1 - 16 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
3d_25C Three days - 25 degrees Celsius 0.69 0.0 1.63
5d_25C Five days - 25 degrees Celsius 0.56 0.0 1.31
7d_25C Seven days - 25 degrees Celsius 0.41 0.0 1.03
10d_25C Ten days - 25 degrees Celsius 0.42 0.0 1.07
7d_15C Seven days - 15 degrees Celsius 0.97 0.0 2.09
7d_30C Seven days - 30 degrees Celsius 0.86 0.0 1.97

Differential expression

Label1 Label2 Q-value Significant difference
3d_25C 5d_25C 1.000000 no
3d_25C 7d_25C 1.000000 no
3d_25C 7d_15C 0.713337 no
3d_25C 7d_30C 0.845780 no
3d_25C 10d_25C 1.000000 no
5d_25C 7d_25C 1.000000 no
5d_25C 7d_15C 0.500566 no
5d_25C 7d_30C 0.658774 no
5d_25C 10d_25C 1.000000 no
7d_25C 7d_15C 0.298033 no
7d_25C 7d_30C 0.427906 no
7d_25C 10d_25C 1.000000 no
7d_15C 7d_30C 0.908740 no
7d_15C 10d_25C 0.309493 no
7d_30C 10d_25C 0.440515 no

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Pro_DTO377G3_2|g9627.t1
MFPIAVLALVATAQAHTVAWTKGMYCSGGPDLSTVNLNTNTAVGPLYNLAKEDWWFQHERGCDAAPPQDGEVLEL
PAGGSFTVELAHNRAQTTLSYGGQYASDWPDGKDHPEDWAGPGSPPDCIQDDGAMHTNNQSMAAGTAFAISYQSD
LADVTIDNLAVFTVLEHTPWKRIATYEVPADLPACPEGGCTCAWLWVPNGCGQPNMYMAGYKCNVTGSTSSKQVA
PAQVAAYCEDDSTKCVKGAKQMIAFNQQTGNNVQVPNGKTPMYNTAWGWESGAQNDIFV*
Coding >Pro_DTO377G3_2|g9627.t1
ATGTTTCCCATCGCCGTTTTAGCACTGGTTGCTACCGCCCAGGCACACACAGTCGCCTGGACCAAAGGCATGTAC
TGCTCTGGGGGCCCTGATCTTTCTACCGTCAACCTCAATACCAACACAGCAGTGGGGCCCCTTTACAACCTCGCC
AAGGAGGACTGGTGGTTCCAACACGAACGTGGATGCGATGCAGCACCGCCGCAGGACGGCGAGGTTCTCGAACTC
CCTGCTGGTGGAAGCTTCACCGTCGAGCTCGCCCATAACCGGGCGCAGACTACACTGTCATACGGTGGACAGTAC
GCCTCTGATTGGCCGGATGGAAAGGATCACCCAGAAGACTGGGCAGGTCCTGGAAGTCCGCCAGACTGCATCCAG
GATGACGGTGCAATGCACACCAACAACCAATCCATGGCTGCTGGTACCGCGTTTGCGATCAGCTATCAGTCAGAT
CTAGCCGATGTCACAATCGACAACTTGGCCGTATTCACGGTCTTGGAGCACACCCCGTGGAAACGTATCGCTACC
TATGAAGTTCCAGCGGATCTTCCTGCCTGCCCTGAGGGTGGCTGCACCTGTGCTTGGCTCTGGGTGCCGAACGGC
TGCGGACAACCTAACATGTACATGGCTGGCTACAAGTGCAATGTGACGGGCTCAACATCATCCAAGCAGGTTGCA
CCTGCTCAAGTCGCGGCTTATTGCGAAGATGACTCGACCAAGTGTGTCAAGGGCGCCAAGCAGATGATTGCTTTC
AACCAACAAACCGGAAACAACGTTCAAGTGCCCAATGGCAAGACACCGATGTACAACACGGCCTGGGGTTGGGAA
TCAGGTGCCCAAAATGATATTTTCGTGTGA
Transcript >Pro_DTO377G3_2|g9627.t1
ATGTTTCCCATCGCCGTTTTAGCACTGGTTGCTACCGCCCAGGCACACACAGTCGCCTGGACCAAAGGCATGTAC
TGCTCTGGGGGCCCTGATCTTTCTACCGTCAACCTCAATACCAACACAGCAGTGGGGCCCCTTTACAACCTCGCC
AAGGAGGACTGGTGGTTCCAACACGAACGTGGATGCGATGCAGCACCGCCGCAGGACGGCGAGGTTCTCGAACTC
CCTGCTGGTGGAAGCTTCACCGTCGAGCTCGCCCATAACCGGGCGCAGACTACACTGTCATACGGTGGACAGTAC
GCCTCTGATTGGCCGGATGGAAAGGATCACCCAGAAGACTGGGCAGGTCCTGGAAGTCCGCCAGACTGCATCCAG
GATGACGGTGCAATGCACACCAACAACCAATCCATGGCTGCTGGTACCGCGTTTGCGATCAGCTATCAGTCAGAT
CTAGCCGATGTCACAATCGACAACTTGGCCGTATTCACGGTCTTGGAGCACACCCCGTGGAAACGTATCGCTACC
TATGAAGTTCCAGCGGATCTTCCTGCCTGCCCTGAGGGTGGCTGCACCTGTGCTTGGCTCTGGGTGCCGAACGGC
TGCGGACAACCTAACATGTACATGGCTGGCTACAAGTGCAATGTGACGGGCTCAACATCATCCAAGCAGGTTGCA
CCTGCTCAAGTCGCGGCTTATTGCGAAGATGACTCGACCAAGTGTGTCAAGGGCGCCAAGCAGATGATTGCTTTC
AACCAACAAACCGGAAACAACGTTCAAGTGCCCAATGGCAAGACACCGATGTACAACACGGCCTGGGGTTGGGAA
TCAGGTGCCCAAAATGATATTTTCGTGTGA
Gene >Pro_DTO377G3_2|g9627.t1
ATGTTTCCCATCGCCGTTTTAGCACTGGTTGCTACCGCCCAGGCACACACAGTCGCCTGGACCAAAGGCATGTAC
TGCTCTGGGGGCCCTGATCTTTCTACCGTCAACCTCAATACCAACACAGCAGTGGGGCCCCTTTACAACCTCGCC
AAGGAGGACTGGTGGTTCCAACACGAACGTGGATGCGATGCAGCACCGCCGCAGGACGGCGAGGTTCTCGAACTC
CCTGCTGGTGGAAGCTTCACCGTCGAGCTCGCCCATAACCGGGCGCAGACTACACTGTCATACGGTGGACAGTAC
GCCTCTGATTGGCCGGATGGAAAGGATCACCCAGAAGACTGGGCAGGTCCTGGAAGTCCGCCAGACTGCATCCAG
GATGACGGTGCAATGCACACCAACAACCAATCCATGGCTGCTGGTACCGCGTTTGCGATCAGCTATCAGTCAGAT
CTAGCCGATGTCACAATCGACAACTTGGCCGTATTCACGGTCTTGGAGCAGTAAGTATCTTTCAAGAGATGGGTG
CGTGAAATGATTGAAGTTCTAACCTACATCTTAAGCACCCCGTGGAAACGTATCGCTACCTATGAAGTTCCAGCG
GATCTTCCTGCCTGCCCTGAGGGTGGCTGCACCTGTGCTTGGCTCTGGGTAAGTGGATGGATCAAGTATACCACG
ATATAAACTAACGCATTTGCAGGTGCCGAACGGCTGCGGACAACCTAACATGCAAGTATCTGTTGTCACAGTGTA
GGATTTTGACTGCTAACTCGAAAACTAGGTACATGGCTGGCTACAAGTGCAATGTGACGGGCTCAACATCATCCA
AGCAGGTTGCACCTGCTCAAGTCGCGGCTTATTGCGAAGATGACTCGACCAAGTGTGTCAAGGGCGCCAAGCAGA
TGATTGCTTTCAACCGTAAGATATTTGAATCTTTAGTCGCACTTTTTTATACAGTTGACTGACTCGAGCAGAACA
AACCGGAAACAACGTTCAAGTGCCCAATGGCAAGACACCGATGTACAACACGGCCTGGGGTTGGGAATCAGGTAT
GTGTTCATTCCGGACGACTCTTCAGCAATGATAAACTAATGACAAATTCTTACATCGACAGGTGCCCAAAATGAT
ATTTTCGTGTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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