Fungal Genomics

at Utrecht University

General Properties

Protein IDPro_DTO377G3_2|g9610.t1
Gene name
Locationscaffold_52:87819..89102
Strand-
Gene length (bp)1283
Transcript length (bp)972
Coding sequence length (bp)972
Protein length (aa) 324

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF03388 Lectin_leg-like Legume-like lectin family 4.0E-65 34 255
PF18483 Bact_lectin Bacterial lectin 5.0E-08 50 247

GO

GO Term Description Terminal node
GO:0016020 membrane Yes
GO:0110165 cellular anatomical entity No
GO:0005575 cellular_component No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
Yes 1 - 23 0.45

Transmembrane Domains

Domain # Start End Length
1 290 312 22

Transcription Factor Class

(None)

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
3d_25C Three days - 25 degrees Celsius 216.33 131.89 300.77
5d_25C Five days - 25 degrees Celsius 310.82 187.33 434.32
7d_25C Seven days - 25 degrees Celsius 381.98 229.40 534.57
10d_25C Ten days - 25 degrees Celsius 604.37 351.04 857.70
7d_15C Seven days - 15 degrees Celsius 160.18 97.45 222.91
7d_30C Seven days - 30 degrees Celsius 426.52 254.54 598.50

Differential expression

Label1 Label2 Q-value Significant difference
3d_25C 5d_25C 0.097861 no
3d_25C 7d_25C 0.004045 yes
3d_25C 7d_15C 0.179558 no
3d_25C 7d_30C 0.000700 yes
3d_25C 10d_25C 0.000700 yes
5d_25C 7d_25C 0.410720 no
5d_25C 7d_15C 0.000700 yes
5d_25C 7d_30C 0.165703 no
5d_25C 10d_25C 0.002297 yes
7d_25C 7d_15C 0.000700 yes
7d_25C 7d_30C 0.699947 no
7d_25C 10d_25C 0.033697 yes
7d_15C 7d_30C 0.000700 yes
7d_15C 10d_25C 0.000700 yes
7d_30C 10d_25C 0.138505 no

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Pro_DTO377G3_2|g9610.t1
MRLPSISSLLCFAGLVALPVNAYDDPNIKSIPLRTHSLSPPYLDSDFQSRWFDFGGDTVIRADKYVRLTADRPSQ
QGWISSRVPLTATNWQIELEFEIHGSGNLHGDGFALWLTKERATQGPVFGSTDRFEGLGVFFDTYKNNRPGVSFP
YVMAMMGDGQTSYDQAHDGKANELAGCSARGLRSAPVPTKARLTYFQDKSLSLELQYKSEDTWTECFNLSAEDSN
IAIPSVAYLGLSAETGELSDNHDIISLKAENLYSLNRGKTTEDRSKGRVRSSPKPVKELKEKSSWTWFLFKIVLF
FGVVVGGYFGWTVYRTKTRSSRF*
Coding >Pro_DTO377G3_2|g9610.t1
ATGCGTCTTCCGTCTATTTCCTCGCTTCTCTGCTTCGCGGGCTTGGTCGCCTTACCCGTGAATGCCTACGATGAC
CCAAATATCAAAAGCATCCCCCTTCGCACCCATAGCCTCTCTCCGCCATACCTCGATTCAGACTTCCAAAGCCGC
TGGTTCGACTTCGGAGGAGATACAGTAATCCGCGCTGACAAATACGTTCGCCTCACGGCTGACCGGCCATCGCAG
CAAGGATGGATCTCCTCCCGCGTACCTCTGACCGCAACCAATTGGCAGATTGAGCTCGAGTTTGAGATCCACGGC
TCCGGCAACTTGCATGGTGATGGATTTGCCCTCTGGCTCACCAAGGAGCGTGCCACACAGGGCCCTGTCTTCGGT
TCGACAGACAGATTCGAGGGTCTCGGTGTCTTCTTCGACACCTATAAGAACAACCGCCCCGGTGTGTCGTTCCCT
TACGTCATGGCGATGATGGGCGATGGGCAGACCTCCTATGACCAGGCGCATGACGGCAAGGCGAACGAGCTAGCC
GGTTGCTCTGCTCGTGGTCTCCGCAGCGCCCCAGTTCCCACAAAGGCTCGTCTTACCTACTTCCAGGACAAGTCC
CTGTCCCTGGAGCTACAGTACAAGTCCGAAGACACATGGACCGAGTGCTTCAATCTTTCCGCTGAGGATTCTAAC
ATCGCCATCCCCTCCGTCGCATACCTGGGCCTCTCCGCCGAGACCGGCGAGCTGAGTGACAACCACGACATCATC
TCCCTCAAGGCCGAGAACCTATACTCACTTAACCGCGGGAAGACCACAGAAGACCGGTCCAAGGGCCGTGTCCGC
TCCTCCCCCAAGCCTGTTAAGGAGCTCAAGGAGAAGAGTAGCTGGACTTGGTTCCTCTTCAAGATCGTGCTGTTC
TTCGGCGTTGTTGTCGGTGGTTACTTTGGCTGGACGGTCTACCGGACCAAGACCCGGTCATCGCGTTTCTAA
Transcript >Pro_DTO377G3_2|g9610.t1
ATGCGTCTTCCGTCTATTTCCTCGCTTCTCTGCTTCGCGGGCTTGGTCGCCTTACCCGTGAATGCCTACGATGAC
CCAAATATCAAAAGCATCCCCCTTCGCACCCATAGCCTCTCTCCGCCATACCTCGATTCAGACTTCCAAAGCCGC
TGGTTCGACTTCGGAGGAGATACAGTAATCCGCGCTGACAAATACGTTCGCCTCACGGCTGACCGGCCATCGCAG
CAAGGATGGATCTCCTCCCGCGTACCTCTGACCGCAACCAATTGGCAGATTGAGCTCGAGTTTGAGATCCACGGC
TCCGGCAACTTGCATGGTGATGGATTTGCCCTCTGGCTCACCAAGGAGCGTGCCACACAGGGCCCTGTCTTCGGT
TCGACAGACAGATTCGAGGGTCTCGGTGTCTTCTTCGACACCTATAAGAACAACCGCCCCGGTGTGTCGTTCCCT
TACGTCATGGCGATGATGGGCGATGGGCAGACCTCCTATGACCAGGCGCATGACGGCAAGGCGAACGAGCTAGCC
GGTTGCTCTGCTCGTGGTCTCCGCAGCGCCCCAGTTCCCACAAAGGCTCGTCTTACCTACTTCCAGGACAAGTCC
CTGTCCCTGGAGCTACAGTACAAGTCCGAAGACACATGGACCGAGTGCTTCAATCTTTCCGCTGAGGATTCTAAC
ATCGCCATCCCCTCCGTCGCATACCTGGGCCTCTCCGCCGAGACCGGCGAGCTGAGTGACAACCACGACATCATC
TCCCTCAAGGCCGAGAACCTATACTCACTTAACCGCGGGAAGACCACAGAAGACCGGTCCAAGGGCCGTGTCCGC
TCCTCCCCCAAGCCTGTTAAGGAGCTCAAGGAGAAGAGTAGCTGGACTTGGTTCCTCTTCAAGATCGTGCTGTTC
TTCGGCGTTGTTGTCGGTGGTTACTTTGGCTGGACGGTCTACCGGACCAAGACCCGGTCATCGCGTTTCTAA
Gene >Pro_DTO377G3_2|g9610.t1
ATGCGTCTTCCGTCTATTTCCTCGCTTCTCTGCTTCGCGGGCTTGGTCGCCTTACCCGTGAATGCCTACGATGAC
CCAAATATCAAAAGCATCCCCGTATGTGCTCAATGTTGACTCCGTTTCAAGCCGAGGTACTAACTTTGGACATCT
GTCAGCTTCGCACCCATAGCCTCTCTCCGGTATGATCATAACCCGCGAACACACTGTGCACGGATCGTGCTCCGA
GGAGGAATATCAGTATTGACCGATGTAACAGCCATACCTCGATTCAGACTTCCAAAGCCGCTGGTTCGACTTCGG
AGGAGATACAGTAATCCGCGCTGACAAGTGAGATATTCCGGTCTTCAGGTGGACTCTGTAATCAGTGCTGATTTT
CGTCTTTGTTCAGATACGTTCGCCTCACGGCTGACCGGCCATCGCAGCAAGGATGGATCTCCTCCCGCGTACCTC
TGACCGCAACCAATTGGCAGGTAAATTCACGAACCCCGCGGAACAGAATATGGGCCAAAAGCTCACGTACGCCTC
TGCTAGATTGAGCTCGAGTTTGAGATCCACGGCTCCGGCAACTTGCATGGTGATGGATTTGCCCTCTGGCTCACC
AAGGAGCGTGCCACACAGGGCCCTGTCTTCGGTTCGACAGACAGATTCGAGGGTCTCGGTGTCTTCTTCGACACC
TATAAGAACAACCGCCCCGGTGTGTCGTTCCCTTACGTCATGGCGATGATGGGCGATGGGCAGACCTCCTATGAC
CAGGCGCATGACGGCAAGGCGAACGAGCTAGCCGGTTGCTCTGTGAGTTGACATTGATTCGCGGCTGTTTTGGAT
ATACCGCTAACTGTTCACAGGCTCGTGGTCTCCGCAGCGCCCCAGTTCCCACAAAGGCTCGTCTTACCTACTTCC
AGGACAAGTCCCTGTCCCTGGAGCTACAGTACAAGTCCGAAGACACATGGACCGAGTGCTTCAATCTTTCCGCTG
AGGATTCTAACATCGCCATCCCCTCCGTCGCATACCTGGGCCTCTCCGCCGAGACCGGCGAGCTGAGTGACAACC
ACGACATCATCTCCCTCAAGGCCGAGAACCTATACTCACTTAACCGCGGGAAGACCACAGAAGACCGGTCCAAGG
GCCGTGTCCGCTCCTCCCCCAAGCCTGTTAAGGAGCTCAAGGAGAAGAGTAGCTGGACTTGGTTCCTCTTCAAGA
TCGTGCTGTTCTTCGGCGTTGTTGTCGGTGGTTACTTTGGCTGGACGGTCTACCGGACCAAGACCCGGTCATCGC
GTTTCTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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