© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g9610.t1 |
| Gene name | |
| Location | scaffold_52:87819..89102 |
| Strand | - |
| Gene length (bp) | 1283 |
| Transcript length (bp) | 972 |
| Coding sequence length (bp) | 972 |
| Protein length (aa) | 324 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF03388 | Lectin_leg-like | Legume-like lectin family | 4.0E-65 | 34 | 255 |
| PF18483 | Bact_lectin | Bacterial lectin | 5.0E-08 | 50 | 247 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016020 | membrane | Yes |
| GO:0110165 | cellular anatomical entity | No |
| GO:0005575 | cellular_component | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 23 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 290 | 312 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 216.33 | 131.89 | 300.77 |
| 5d_25C | Five days - 25 degrees Celsius | 310.82 | 187.33 | 434.32 |
| 7d_25C | Seven days - 25 degrees Celsius | 381.98 | 229.40 | 534.57 |
| 10d_25C | Ten days - 25 degrees Celsius | 604.37 | 351.04 | 857.70 |
| 7d_15C | Seven days - 15 degrees Celsius | 160.18 | 97.45 | 222.91 |
| 7d_30C | Seven days - 30 degrees Celsius | 426.52 | 254.54 | 598.50 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.097861 | no |
| 3d_25C | 7d_25C | 0.004045 | yes |
| 3d_25C | 7d_15C | 0.179558 | no |
| 3d_25C | 7d_30C | 0.000700 | yes |
| 3d_25C | 10d_25C | 0.000700 | yes |
| 5d_25C | 7d_25C | 0.410720 | no |
| 5d_25C | 7d_15C | 0.000700 | yes |
| 5d_25C | 7d_30C | 0.165703 | no |
| 5d_25C | 10d_25C | 0.002297 | yes |
| 7d_25C | 7d_15C | 0.000700 | yes |
| 7d_25C | 7d_30C | 0.699947 | no |
| 7d_25C | 10d_25C | 0.033697 | yes |
| 7d_15C | 7d_30C | 0.000700 | yes |
| 7d_15C | 10d_25C | 0.000700 | yes |
| 7d_30C | 10d_25C | 0.138505 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g9610.t1 MRLPSISSLLCFAGLVALPVNAYDDPNIKSIPLRTHSLSPPYLDSDFQSRWFDFGGDTVIRADKYVRLTADRPSQ QGWISSRVPLTATNWQIELEFEIHGSGNLHGDGFALWLTKERATQGPVFGSTDRFEGLGVFFDTYKNNRPGVSFP YVMAMMGDGQTSYDQAHDGKANELAGCSARGLRSAPVPTKARLTYFQDKSLSLELQYKSEDTWTECFNLSAEDSN IAIPSVAYLGLSAETGELSDNHDIISLKAENLYSLNRGKTTEDRSKGRVRSSPKPVKELKEKSSWTWFLFKIVLF FGVVVGGYFGWTVYRTKTRSSRF* |
| Coding | >Pro_DTO377G3_2|g9610.t1 ATGCGTCTTCCGTCTATTTCCTCGCTTCTCTGCTTCGCGGGCTTGGTCGCCTTACCCGTGAATGCCTACGATGAC CCAAATATCAAAAGCATCCCCCTTCGCACCCATAGCCTCTCTCCGCCATACCTCGATTCAGACTTCCAAAGCCGC TGGTTCGACTTCGGAGGAGATACAGTAATCCGCGCTGACAAATACGTTCGCCTCACGGCTGACCGGCCATCGCAG CAAGGATGGATCTCCTCCCGCGTACCTCTGACCGCAACCAATTGGCAGATTGAGCTCGAGTTTGAGATCCACGGC TCCGGCAACTTGCATGGTGATGGATTTGCCCTCTGGCTCACCAAGGAGCGTGCCACACAGGGCCCTGTCTTCGGT TCGACAGACAGATTCGAGGGTCTCGGTGTCTTCTTCGACACCTATAAGAACAACCGCCCCGGTGTGTCGTTCCCT TACGTCATGGCGATGATGGGCGATGGGCAGACCTCCTATGACCAGGCGCATGACGGCAAGGCGAACGAGCTAGCC GGTTGCTCTGCTCGTGGTCTCCGCAGCGCCCCAGTTCCCACAAAGGCTCGTCTTACCTACTTCCAGGACAAGTCC CTGTCCCTGGAGCTACAGTACAAGTCCGAAGACACATGGACCGAGTGCTTCAATCTTTCCGCTGAGGATTCTAAC ATCGCCATCCCCTCCGTCGCATACCTGGGCCTCTCCGCCGAGACCGGCGAGCTGAGTGACAACCACGACATCATC TCCCTCAAGGCCGAGAACCTATACTCACTTAACCGCGGGAAGACCACAGAAGACCGGTCCAAGGGCCGTGTCCGC TCCTCCCCCAAGCCTGTTAAGGAGCTCAAGGAGAAGAGTAGCTGGACTTGGTTCCTCTTCAAGATCGTGCTGTTC TTCGGCGTTGTTGTCGGTGGTTACTTTGGCTGGACGGTCTACCGGACCAAGACCCGGTCATCGCGTTTCTAA |
| Transcript | >Pro_DTO377G3_2|g9610.t1 ATGCGTCTTCCGTCTATTTCCTCGCTTCTCTGCTTCGCGGGCTTGGTCGCCTTACCCGTGAATGCCTACGATGAC CCAAATATCAAAAGCATCCCCCTTCGCACCCATAGCCTCTCTCCGCCATACCTCGATTCAGACTTCCAAAGCCGC TGGTTCGACTTCGGAGGAGATACAGTAATCCGCGCTGACAAATACGTTCGCCTCACGGCTGACCGGCCATCGCAG CAAGGATGGATCTCCTCCCGCGTACCTCTGACCGCAACCAATTGGCAGATTGAGCTCGAGTTTGAGATCCACGGC TCCGGCAACTTGCATGGTGATGGATTTGCCCTCTGGCTCACCAAGGAGCGTGCCACACAGGGCCCTGTCTTCGGT TCGACAGACAGATTCGAGGGTCTCGGTGTCTTCTTCGACACCTATAAGAACAACCGCCCCGGTGTGTCGTTCCCT TACGTCATGGCGATGATGGGCGATGGGCAGACCTCCTATGACCAGGCGCATGACGGCAAGGCGAACGAGCTAGCC GGTTGCTCTGCTCGTGGTCTCCGCAGCGCCCCAGTTCCCACAAAGGCTCGTCTTACCTACTTCCAGGACAAGTCC CTGTCCCTGGAGCTACAGTACAAGTCCGAAGACACATGGACCGAGTGCTTCAATCTTTCCGCTGAGGATTCTAAC ATCGCCATCCCCTCCGTCGCATACCTGGGCCTCTCCGCCGAGACCGGCGAGCTGAGTGACAACCACGACATCATC TCCCTCAAGGCCGAGAACCTATACTCACTTAACCGCGGGAAGACCACAGAAGACCGGTCCAAGGGCCGTGTCCGC TCCTCCCCCAAGCCTGTTAAGGAGCTCAAGGAGAAGAGTAGCTGGACTTGGTTCCTCTTCAAGATCGTGCTGTTC TTCGGCGTTGTTGTCGGTGGTTACTTTGGCTGGACGGTCTACCGGACCAAGACCCGGTCATCGCGTTTCTAA |
| Gene | >Pro_DTO377G3_2|g9610.t1 ATGCGTCTTCCGTCTATTTCCTCGCTTCTCTGCTTCGCGGGCTTGGTCGCCTTACCCGTGAATGCCTACGATGAC CCAAATATCAAAAGCATCCCCGTATGTGCTCAATGTTGACTCCGTTTCAAGCCGAGGTACTAACTTTGGACATCT GTCAGCTTCGCACCCATAGCCTCTCTCCGGTATGATCATAACCCGCGAACACACTGTGCACGGATCGTGCTCCGA GGAGGAATATCAGTATTGACCGATGTAACAGCCATACCTCGATTCAGACTTCCAAAGCCGCTGGTTCGACTTCGG AGGAGATACAGTAATCCGCGCTGACAAGTGAGATATTCCGGTCTTCAGGTGGACTCTGTAATCAGTGCTGATTTT CGTCTTTGTTCAGATACGTTCGCCTCACGGCTGACCGGCCATCGCAGCAAGGATGGATCTCCTCCCGCGTACCTC TGACCGCAACCAATTGGCAGGTAAATTCACGAACCCCGCGGAACAGAATATGGGCCAAAAGCTCACGTACGCCTC TGCTAGATTGAGCTCGAGTTTGAGATCCACGGCTCCGGCAACTTGCATGGTGATGGATTTGCCCTCTGGCTCACC AAGGAGCGTGCCACACAGGGCCCTGTCTTCGGTTCGACAGACAGATTCGAGGGTCTCGGTGTCTTCTTCGACACC TATAAGAACAACCGCCCCGGTGTGTCGTTCCCTTACGTCATGGCGATGATGGGCGATGGGCAGACCTCCTATGAC CAGGCGCATGACGGCAAGGCGAACGAGCTAGCCGGTTGCTCTGTGAGTTGACATTGATTCGCGGCTGTTTTGGAT ATACCGCTAACTGTTCACAGGCTCGTGGTCTCCGCAGCGCCCCAGTTCCCACAAAGGCTCGTCTTACCTACTTCC AGGACAAGTCCCTGTCCCTGGAGCTACAGTACAAGTCCGAAGACACATGGACCGAGTGCTTCAATCTTTCCGCTG AGGATTCTAACATCGCCATCCCCTCCGTCGCATACCTGGGCCTCTCCGCCGAGACCGGCGAGCTGAGTGACAACC ACGACATCATCTCCCTCAAGGCCGAGAACCTATACTCACTTAACCGCGGGAAGACCACAGAAGACCGGTCCAAGG GCCGTGTCCGCTCCTCCCCCAAGCCTGTTAAGGAGCTCAAGGAGAAGAGTAGCTGGACTTGGTTCCTCTTCAAGA TCGTGCTGTTCTTCGGCGTTGTTGTCGGTGGTTACTTTGGCTGGACGGTCTACCGGACCAAGACCCGGTCATCGC GTTTCTAA |