© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Pro_DTO377G3_2|g9587.t1 |
| Gene name | |
| Location | scaffold_52:28145..29294 |
| Strand | - |
| Gene length (bp) | 1149 |
| Transcript length (bp) | 1080 |
| Coding sequence length (bp) | 1080 |
| Protein length (aa) | 360 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00682 | HMGL-like | HMGL-like | 5.8E-48 | 34 | 329 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0003824 | catalytic activity | Yes |
| GO:0003674 | molecular_function | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 21 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 259.29 | 156.29 | 362.29 |
| 5d_25C | Five days - 25 degrees Celsius | 242.05 | 145.05 | 339.04 |
| 7d_25C | Seven days - 25 degrees Celsius | 213.59 | 129.30 | 297.88 |
| 10d_25C | Ten days - 25 degrees Celsius | 258.68 | 155.89 | 361.47 |
| 7d_15C | Seven days - 15 degrees Celsius | 390.90 | 223.62 | 558.18 |
| 7d_30C | Seven days - 30 degrees Celsius | 186.64 | 112.12 | 261.15 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.819818 | no |
| 3d_25C | 7d_25C | 0.446210 | no |
| 3d_25C | 7d_15C | 0.063693 | no |
| 3d_25C | 7d_30C | 0.135543 | no |
| 3d_25C | 10d_25C | 0.994748 | no |
| 5d_25C | 7d_25C | 0.654087 | no |
| 5d_25C | 7d_15C | 0.023923 | yes |
| 5d_25C | 7d_30C | 0.269079 | no |
| 5d_25C | 10d_25C | 0.832579 | no |
| 7d_25C | 7d_15C | 0.002761 | yes |
| 7d_25C | 7d_30C | 0.626616 | no |
| 7d_25C | 10d_25C | 0.452408 | no |
| 7d_15C | 7d_30C | 0.000700 | yes |
| 7d_15C | 10d_25C | 0.060388 | no |
| 7d_30C | 10d_25C | 0.146409 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g9587.t1 MTITRPRLSLFSALRSPYSARRFSTESRLTSDHVRIVEVGARDGLQNEKKTISMQTKLELIERLAKTGVTTIEAG SFVPAKWVPQMASTAEICEHLLTKPPQAQSTIAYNYLVPNIRGLENLVKILDDTGVSADATGETSKSATTTEVSL FAAATEAFSKANTNCSITESLERIKPIVALARSKNIRVRGYVSVALGCPYEGPDVDPVKVADITATLLEMGADEV SVADTTGMGTAPRTMELMQALKAAGIANTDLALHFHDTYGQALVNTIVGLEHGVRIFDSSVAGLGGCPYSKGATG NVATEDLVHTIHSLGMHTGVSLDEMSKIGGWISEELGRANGSRAGKATLARLATEKASL* |
| Coding | >Pro_DTO377G3_2|g9587.t1 ATGACGATAACCCGCCCCAGGTTGAGTCTTTTCTCTGCCCTACGATCTCCATACTCTGCACGCCGCTTCTCGACC GAGTCGCGCTTAACATCGGACCATGTCCGCATCGTGGAGGTTGGCGCTCGGGATGGACTGCAGAATGAGAAAAAA ACAATTTCAATGCAAACAAAGCTTGAGTTAATCGAGCGACTGGCTAAGACAGGTGTCACCACCATTGAAGCTGGC TCATTTGTGCCCGCAAAATGGGTACCCCAGATGGCTAGCACAGCTGAGATTTGTGAGCACCTCCTTACAAAACCG CCTCAAGCACAATCTACAATTGCATACAATTATCTTGTCCCCAACATCAGAGGACTGGAGAACCTGGTCAAGATC CTGGATGACACAGGAGTCTCCGCGGACGCGACTGGGGAGACCTCAAAGTCAGCGACGACTACAGAGGTGTCTCTT TTTGCTGCAGCAACGGAAGCTTTCTCTAAAGCTAACACCAACTGCTCCATTACCGAGTCACTGGAGCGCATCAAG CCGATTGTCGCATTGGCAAGGAGCAAGAATATCCGGGTACGCGGATATGTCTCTGTTGCACTAGGATGCCCATAT GAAGGCCCCGATGTGGATCCTGTCAAGGTGGCTGATATTACCGCCACCCTACTGGAGATGGGAGCGGATGAGGTC TCAGTGGCGGACACAACGGGTATGGGCACCGCTCCTCGGACCATGGAGCTCATGCAAGCCCTCAAGGCTGCTGGC ATCGCTAACACAGACTTGGCGTTGCACTTCCATGATACCTATGGACAGGCTTTGGTGAACACAATCGTCGGCCTG GAGCATGGTGTCCGCATTTTCGACAGCAGTGTGGCTGGGCTTGGTGGTTGCCCGTATTCTAAGGGCGCGACAGGG AATGTGGCGACGGAGGACCTTGTGCACACGATTCACAGCCTGGGAATGCATACCGGGGTCAGCTTAGATGAGATG TCGAAAATCGGAGGTTGGATTAGTGAGGAGCTGGGCCGAGCTAATGGCAGCAGGGCTGGAAAAGCGACTCTCGCC CGTCTCGCAACAGAAAAAGCGTCACTTTGA |
| Transcript | >Pro_DTO377G3_2|g9587.t1 ATGACGATAACCCGCCCCAGGTTGAGTCTTTTCTCTGCCCTACGATCTCCATACTCTGCACGCCGCTTCTCGACC GAGTCGCGCTTAACATCGGACCATGTCCGCATCGTGGAGGTTGGCGCTCGGGATGGACTGCAGAATGAGAAAAAA ACAATTTCAATGCAAACAAAGCTTGAGTTAATCGAGCGACTGGCTAAGACAGGTGTCACCACCATTGAAGCTGGC TCATTTGTGCCCGCAAAATGGGTACCCCAGATGGCTAGCACAGCTGAGATTTGTGAGCACCTCCTTACAAAACCG CCTCAAGCACAATCTACAATTGCATACAATTATCTTGTCCCCAACATCAGAGGACTGGAGAACCTGGTCAAGATC CTGGATGACACAGGAGTCTCCGCGGACGCGACTGGGGAGACCTCAAAGTCAGCGACGACTACAGAGGTGTCTCTT TTTGCTGCAGCAACGGAAGCTTTCTCTAAAGCTAACACCAACTGCTCCATTACCGAGTCACTGGAGCGCATCAAG CCGATTGTCGCATTGGCAAGGAGCAAGAATATCCGGGTACGCGGATATGTCTCTGTTGCACTAGGATGCCCATAT GAAGGCCCCGATGTGGATCCTGTCAAGGTGGCTGATATTACCGCCACCCTACTGGAGATGGGAGCGGATGAGGTC TCAGTGGCGGACACAACGGGTATGGGCACCGCTCCTCGGACCATGGAGCTCATGCAAGCCCTCAAGGCTGCTGGC ATCGCTAACACAGACTTGGCGTTGCACTTCCATGATACCTATGGACAGGCTTTGGTGAACACAATCGTCGGCCTG GAGCATGGTGTCCGCATTTTCGACAGCAGTGTGGCTGGGCTTGGTGGTTGCCCGTATTCTAAGGGCGCGACAGGG AATGTGGCGACGGAGGACCTTGTGCACACGATTCACAGCCTGGGAATGCATACCGGGGTCAGCTTAGATGAGATG TCGAAAATCGGAGGTTGGATTAGTGAGGAGCTGGGCCGAGCTAATGGCAGCAGGGCTGGAAAAGCGACTCTCGCC CGTCTCGCAACAGAAAAAGCGTCACTTTGA |
| Gene | >Pro_DTO377G3_2|g9587.t1 ATGACGATAACCCGCCCCAGGTTGAGTCTTTTCTCTGCCCTACGATCTCCATACTCTGCACGCCGCTTCTCGACC GAGTCGCGCTTAACATCGGACCATGTCCGCATCGTGGAGGTTGGCGCTCGGGATGGACTGCAGAATGAGAAAAAA ACAATTTCAATGCAAACAAAGCTTGAGTTAATCGAGCGACTGGCTAAGACAGGTGTCACCACCATTGAAGCTGGC TCATTTGTGCCCGCAAAATGGGTACCCCAGGTATGACCTCAGCGGAGCATCATCGTGCCATTCCAGACGATAAAA ACCGATTTGCTTACGTTACGACAGATGGCTAGCACAGCTGAGATTTGTGAGCACCTCCTTACAAAACCGCCTCAA GCACAATCTACAATTGCATACAATTATCTTGTCCCCAACATCAGAGGACTGGAGAACCTGGTCAAGATCCTGGAT GACACAGGAGTCTCCGCGGACGCGACTGGGGAGACCTCAAAGTCAGCGACGACTACAGAGGTGTCTCTTTTTGCT GCAGCAACGGAAGCTTTCTCTAAAGCTAACACCAACTGCTCCATTACCGAGTCACTGGAGCGCATCAAGCCGATT GTCGCATTGGCAAGGAGCAAGAATATCCGGGTACGCGGATATGTCTCTGTTGCACTAGGATGCCCATATGAAGGC CCCGATGTGGATCCTGTCAAGGTGGCTGATATTACCGCCACCCTACTGGAGATGGGAGCGGATGAGGTCTCAGTG GCGGACACAACGGGTATGGGCACCGCTCCTCGGACCATGGAGCTCATGCAAGCCCTCAAGGCTGCTGGCATCGCT AACACAGACTTGGCGTTGCACTTCCATGATACCTATGGACAGGCTTTGGTGAACACAATCGTCGGCCTGGAGCAT GGTGTCCGCATTTTCGACAGCAGTGTGGCTGGGCTTGGTGGTTGCCCGTATTCTAAGGGCGCGACAGGGAATGTG GCGACGGAGGACCTTGTGCACACGATTCACAGCCTGGGAATGCATACCGGGGTCAGCTTAGATGAGATGTCGAAA ATCGGAGGTTGGATTAGTGAGGAGCTGGGCCGAGCTAATGGCAGCAGGGCTGGAAAAGCGACTCTCGCCCGTCTC GCAACAGAAAAAGCGTCACTTTGA |