© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g9564.t1 |
| Gene name | |
| Location | scaffold_51:52359..53473 |
| Strand | - |
| Gene length (bp) | 1114 |
| Transcript length (bp) | 1047 |
| Coding sequence length (bp) | 1047 |
| Protein length (aa) | 349 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF02826 | 2-Hacid_dh_C | D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain | 2.8E-40 | 123 | 304 |
| PF00389 | 2-Hacid_dh | D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain | 1.1E-10 | 69 | 336 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016616 | oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor | Yes |
| GO:0051287 | NAD binding | Yes |
| GO:1901265 | nucleoside phosphate binding | No |
| GO:0016491 | oxidoreductase activity | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0016614 | oxidoreductase activity, acting on CH-OH group of donors | No |
| GO:0005488 | binding | No |
| GO:0000166 | nucleotide binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0003674 | molecular_function | No |
| GO:0003824 | catalytic activity | No |
| GO:0036094 | small molecule binding | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 44 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 10.65 | 3.83 | 17.48 |
| 5d_25C | Five days - 25 degrees Celsius | 4.48 | 1.02 | 7.95 |
| 7d_25C | Seven days - 25 degrees Celsius | 3.16 | 0.59 | 5.73 |
| 10d_25C | Ten days - 25 degrees Celsius | 2.84 | 0.47 | 5.21 |
| 7d_15C | Seven days - 15 degrees Celsius | 1.45 | 0.00 | 2.99 |
| 7d_30C | Seven days - 30 degrees Celsius | 5.85 | 1.63 | 10.07 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.027278 | yes |
| 3d_25C | 7d_25C | 0.001278 | yes |
| 3d_25C | 7d_15C | 0.000700 | yes |
| 3d_25C | 7d_30C | 0.125400 | no |
| 3d_25C | 10d_25C | 0.001278 | yes |
| 5d_25C | 7d_25C | 0.494797 | no |
| 5d_25C | 7d_15C | 0.037351 | yes |
| 5d_25C | 7d_30C | 0.614607 | no |
| 5d_25C | 10d_25C | 0.379102 | no |
| 7d_25C | 7d_15C | 0.158964 | no |
| 7d_25C | 7d_30C | 0.151030 | no |
| 7d_25C | 10d_25C | 0.875724 | no |
| 7d_15C | 7d_30C | 0.010411 | yes |
| 7d_15C | 10d_25C | 0.253272 | no |
| 7d_30C | 10d_25C | 0.110283 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g9564.t1 MTKPIVLHLGDDIRWNHDQYSKFQDVFEIRRSYSMSRPEFIRALKERQFGDFFAIYRPFWNTGGEMGNWDEELIS LLPDSCKVYASAGAGFDWVDTAALAKKGVVYCNAAAACTESVADAAIWLIISTFRLFSWSHIAARALDVDAFVDA NRNLAMVSHNPNGHTLGIIGFGQIGRRTAEKAFLALNMKIHYYDIVQMPAQLEAVSKATYHKTMDSLLAVSDCVM VATPFSGETLLNASLLAKMKDGSRLINIARGKLLDESALVDALKSGKLAAAGLDVHYNEPRVSPELASMKNVEMM SHNAGASVDSHIGFERLGMENITAFYQTGKAVTPVNAHLVAKATGSKL* |
| Coding | >Pro_DTO377G3_2|g9564.t1 ATGACCAAACCAATTGTCCTCCATCTCGGTGATGACATCCGCTGGAATCACGACCAATACAGCAAGTTCCAAGAT GTCTTCGAGATCCGCCGGTCCTACAGCATGTCTCGGCCGGAGTTTATCCGAGCCCTGAAAGAGCGCCAATTCGGC GATTTCTTCGCCATCTACCGCCCATTCTGGAATACCGGCGGCGAGATGGGGAACTGGGATGAGGAGCTCATCTCA CTGCTACCAGACTCTTGCAAGGTCTACGCCAGTGCAGGTGCTGGATTTGACTGGGTTGATACCGCAGCTTTGGCG AAGAAGGGGGTGGTTTACTGCAATGCTGCAGCAGCATGCACAGAATCCGTCGCCGACGCCGCAATCTGGCTCATA ATCTCCACATTCCGCCTGTTCTCTTGGTCACACATTGCCGCACGCGCACTGGATGTCGATGCATTTGTCGACGCA AACCGCAACCTGGCGATGGTCTCACACAACCCCAATGGACACACACTTGGAATCATTGGCTTCGGCCAGATCGGC CGGCGCACTGCCGAGAAGGCGTTCCTGGCCTTGAACATGAAGATTCACTATTACGACATCGTGCAGATGCCCGCA CAGCTGGAAGCCGTCTCGAAGGCAACATACCATAAGACCATGGACAGTCTCCTTGCTGTTTCAGACTGTGTCATG GTTGCAACGCCGTTTAGCGGGGAGACACTCCTCAATGCATCTCTGCTGGCAAAGATGAAGGACGGCTCGCGACTG ATTAATATCGCCCGTGGCAAGTTGCTCGATGAGAGTGCCCTTGTTGACGCACTGAAGAGTGGTAAGCTTGCTGCT GCGGGCTTGGATGTGCACTACAATGAGCCACGCGTCAGCCCGGAGCTTGCAAGCATGAAGAATGTTGAGATGATG TCGCACAATGCTGGTGCTTCAGTGGACTCACATATCGGATTTGAGAGGTTGGGTATGGAGAATATTACTGCTTTC TATCAAACTGGAAAGGCTGTTACGCCTGTCAATGCGCACCTAGTCGCCAAAGCGACAGGCTCAAAGCTATAG |
| Transcript | >Pro_DTO377G3_2|g9564.t1 ATGACCAAACCAATTGTCCTCCATCTCGGTGATGACATCCGCTGGAATCACGACCAATACAGCAAGTTCCAAGAT GTCTTCGAGATCCGCCGGTCCTACAGCATGTCTCGGCCGGAGTTTATCCGAGCCCTGAAAGAGCGCCAATTCGGC GATTTCTTCGCCATCTACCGCCCATTCTGGAATACCGGCGGCGAGATGGGGAACTGGGATGAGGAGCTCATCTCA CTGCTACCAGACTCTTGCAAGGTCTACGCCAGTGCAGGTGCTGGATTTGACTGGGTTGATACCGCAGCTTTGGCG AAGAAGGGGGTGGTTTACTGCAATGCTGCAGCAGCATGCACAGAATCCGTCGCCGACGCCGCAATCTGGCTCATA ATCTCCACATTCCGCCTGTTCTCTTGGTCACACATTGCCGCACGCGCACTGGATGTCGATGCATTTGTCGACGCA AACCGCAACCTGGCGATGGTCTCACACAACCCCAATGGACACACACTTGGAATCATTGGCTTCGGCCAGATCGGC CGGCGCACTGCCGAGAAGGCGTTCCTGGCCTTGAACATGAAGATTCACTATTACGACATCGTGCAGATGCCCGCA CAGCTGGAAGCCGTCTCGAAGGCAACATACCATAAGACCATGGACAGTCTCCTTGCTGTTTCAGACTGTGTCATG GTTGCAACGCCGTTTAGCGGGGAGACACTCCTCAATGCATCTCTGCTGGCAAAGATGAAGGACGGCTCGCGACTG ATTAATATCGCCCGTGGCAAGTTGCTCGATGAGAGTGCCCTTGTTGACGCACTGAAGAGTGGTAAGCTTGCTGCT GCGGGCTTGGATGTGCACTACAATGAGCCACGCGTCAGCCCGGAGCTTGCAAGCATGAAGAATGTTGAGATGATG TCGCACAATGCTGGTGCTTCAGTGGACTCACATATCGGATTTGAGAGGTTGGGTATGGAGAATATTACTGCTTTC TATCAAACTGGAAAGGCTGTTACGCCTGTCAATGCGCACCTAGTCGCCAAAGCGACAGGCTCAAAGCTATAG |
| Gene | >Pro_DTO377G3_2|g9564.t1 ATGACCAAACCAATTGTCCTCCATCTCGGTGATGACATCCGCTGGAATCACGACCAATACAGCAAGTTCCAAGAT GTCTTCGAGATCCGCCGGTCCTACAGCATGTCTCGGCCGGAGTTTATCCGAGCCCTGAAAGAGCGCCAATTCGGC GATTTCTTCGCCATCTACCGCCCATTCTGGAATACCGGCGGCGAGATGGGGAACTGGGATGAGGAGCTCATCTCA CTGCTACCAGACTCTTGCAAGGTCTACGCCAGTGCAGGTGCTGGATTTGACTGGGTTGATACCGCAGCTTTGGCG AAGAAGGGTGTGTATACAACAAAGCGATCGGGAAGCTGCATATAGGAGAAATAGCTAACAGCTTCATTGTATAGG GGTGGTTTACTGCAATGCTGCAGCAGCATGCACAGAATCCGTCGCCGACGCCGCAATCTGGCTCATAATCTCCAC ATTCCGCCTGTTCTCTTGGTCACACATTGCCGCACGCGCACTGGATGTCGATGCATTTGTCGACGCAAACCGCAA CCTGGCGATGGTCTCACACAACCCCAATGGACACACACTTGGAATCATTGGCTTCGGCCAGATCGGCCGGCGCAC TGCCGAGAAGGCGTTCCTGGCCTTGAACATGAAGATTCACTATTACGACATCGTGCAGATGCCCGCACAGCTGGA AGCCGTCTCGAAGGCAACATACCATAAGACCATGGACAGTCTCCTTGCTGTTTCAGACTGTGTCATGGTTGCAAC GCCGTTTAGCGGGGAGACACTCCTCAATGCATCTCTGCTGGCAAAGATGAAGGACGGCTCGCGACTGATTAATAT CGCCCGTGGCAAGTTGCTCGATGAGAGTGCCCTTGTTGACGCACTGAAGAGTGGTAAGCTTGCTGCTGCGGGCTT GGATGTGCACTACAATGAGCCACGCGTCAGCCCGGAGCTTGCAAGCATGAAGAATGTTGAGATGATGTCGCACAA TGCTGGTGCTTCAGTGGACTCACATATCGGATTTGAGAGGTTGGGTATGGAGAATATTACTGCTTTCTATCAAAC TGGAAAGGCTGTTACGCCTGTCAATGCGCACCTAGTCGCCAAAGCGACAGGCTCAAAGCTATAG |