© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g9559.t1 |
| Gene name | |
| Location | scaffold_51:33478..35248 |
| Strand | + |
| Gene length (bp) | 1770 |
| Transcript length (bp) | 1770 |
| Coding sequence length (bp) | 1770 |
| Protein length (aa) | 590 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00728 | Glyco_hydro_20 | Glycosyl hydrolase family 20, catalytic domain | 1.7E-103 | 172 | 533 |
| PF14845 | Glycohydro_20b2 | beta-acetyl hexosaminidase like | 5.5E-25 | 23 | 149 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds | Yes |
| GO:0005975 | carbohydrate metabolic process | Yes |
| GO:0016798 | hydrolase activity, acting on glycosyl bonds | No |
| GO:0008150 | biological_process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0008152 | metabolic process | No |
| GO:0003674 | molecular_function | No |
| GO:0003824 | catalytic activity | No |
| GO:0016787 | hydrolase activity | No |
| GO:0071704 | organic substance metabolic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 18 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 72.51 | 43.68 | 101.35 |
| 5d_25C | Five days - 25 degrees Celsius | 60.08 | 35.43 | 84.73 |
| 7d_25C | Seven days - 25 degrees Celsius | 48.53 | 27.45 | 69.62 |
| 10d_25C | Ten days - 25 degrees Celsius | 27.89 | 15.14 | 40.64 |
| 7d_15C | Seven days - 15 degrees Celsius | 46.21 | 24.03 | 68.39 |
| 7d_30C | Seven days - 30 degrees Celsius | 65.48 | 37.01 | 93.95 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.472049 | no |
| 3d_25C | 7d_25C | 0.085819 | no |
| 3d_25C | 7d_15C | 0.065810 | no |
| 3d_25C | 7d_30C | 0.738190 | no |
| 3d_25C | 10d_25C | 0.000700 | yes |
| 5d_25C | 7d_25C | 0.419730 | no |
| 5d_25C | 7d_15C | 0.331934 | no |
| 5d_25C | 7d_30C | 0.783262 | no |
| 5d_25C | 10d_25C | 0.000700 | yes |
| 7d_25C | 7d_15C | 0.902965 | no |
| 7d_25C | 7d_30C | 0.234387 | no |
| 7d_25C | 10d_25C | 0.014971 | yes |
| 7d_15C | 7d_30C | 0.182746 | no |
| 7d_15C | 10d_25C | 0.046159 | yes |
| 7d_30C | 10d_25C | 0.000700 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g9559.t1 MKFASVLTVLGALSVSAVQVNPLPAPRNITWGSSGPIQVNHLNLNAHHSSVVSQAWERAWETITTLQWVPAAVEA PIPSYPAFPSTPVSKAKRAPSAVHNVNVHVVDSDADLQHGVDESYTLVVAKGGIQINAQTVWGVLHAFTTLQQIV ISDGKGGLIIEQPVEIKDAPLYPYRGIMVDTGRNFITVRKIFEQIDGMALSKLNVLHWHLDDAQSWPMQMSSYPE MTKDAYSTREIYTEKDIRRVIAYARARGVRVIPEVDMPGHSASGWQQVDPEIVACANSWWSNDVWAEHTAVEPNP GQLDIIYPKTYEVVKNVYHELSRIFDDNFFHVGADEIQPNCYNFSTHITKWFAEDPSRTYRDLTQYWVDHSMPIF RSVGEHRRLMMWEDIFLATESAHNVSKDIVMQTWNNGIDNIKKLTSAGYDVVVSSSDFLYLDCGHGGAITNDPRY NEQSNTDGGVTFNYGGAGGSWCAPYKTWQRIYDYDFLTNLTATEAKHVIGAEAPLWSEQIDDVTISSGFWPRAAA LGELVWSGNRDAAGKKRTTNLTQRLLNFREYLVANGVMATALVPKYCLQHPHACDFYKNQTIIS* |
| Coding | >Pro_DTO377G3_2|g9559.t1 ATGAAGTTCGCCTCTGTCCTGACTGTGCTCGGGGCCTTGTCGGTTTCCGCCGTCCAGGTGAATCCACTTCCCGCC CCCCGTAACATCACCTGGGGTTCCTCCGGTCCAATCCAAGTCAACCACTTGAATTTGAACGCCCATCACTCCTCT GTGGTCTCTCAAGCTTGGGAGCGAGCATGGGAGACTATCACCACCCTGCAATGGGTCCCCGCCGCTGTCGAGGCC CCGATTCCCTCCTACCCAGCCTTCCCTTCGACCCCTGTCTCCAAGGCCAAACGCGCGCCCTCCGCGGTCCACAAC GTCAATGTCCATGTGGTGGACAGCGATGCCGATCTCCAACACGGCGTGGATGAATCCTATACACTGGTGGTGGCC AAGGGCGGCATCCAGATCAATGCGCAGACGGTATGGGGTGTGTTGCACGCGTTCACCACCCTGCAGCAAATTGTC ATCTCAGATGGCAAGGGCGGCTTGATCATTGAACAGCCGGTCGAGATCAAGGATGCCCCGCTGTACCCCTACCGT GGCATCATGGTAGACACCGGTCGCAACTTCATCACCGTTCGCAAGATCTTCGAGCAGATCGACGGTATGGCCCTG TCCAAGCTTAATGTCCTTCACTGGCACTTGGACGATGCGCAGTCATGGCCCATGCAGATGAGCTCCTACCCCGAG ATGACCAAAGATGCCTACTCGACTCGCGAAATCTACACCGAGAAAGACATCCGCCGCGTGATTGCCTACGCCCGC GCCCGAGGTGTCCGTGTCATCCCCGAGGTCGACATGCCCGGCCACTCTGCTTCAGGCTGGCAGCAGGTCGACCCG GAGATCGTGGCGTGTGCCAACAGCTGGTGGTCGAATGATGTGTGGGCGGAGCACACCGCGGTCGAGCCGAACCCT GGCCAGCTCGATATCATCTATCCCAAGACCTACGAAGTGGTCAAGAATGTGTACCACGAATTGTCGCGTATCTTC GACGACAACTTCTTCCACGTTGGTGCTGATGAGATCCAGCCTAACTGCTACAACTTCAGCACTCACATCACCAAG TGGTTTGCCGAGGATCCTTCGCGCACCTACAGGGACCTTACCCAGTACTGGGTCGACCACTCCATGCCTATCTTC CGTAGTGTCGGTGAGCACCGTCGCCTCATGATGTGGGAGGACATTTTCCTCGCGACCGAGAGCGCGCACAACGTG TCCAAAGACATCGTCATGCAGACTTGGAACAACGGCATTGACAATATCAAGAAGCTCACCTCGGCCGGCTACGAC GTGGTCGTCTCGTCCTCCGATTTCCTCTACCTCGACTGCGGCCACGGCGGCGCTATCACCAACGACCCCCGTTAC AACGAGCAGAGCAACACTGACGGCGGCGTGACCTTCAACTACGGCGGCGCCGGTGGCTCCTGGTGCGCCCCCTAC AAGACCTGGCAGCGTATCTACGACTACGATTTCCTCACGAACCTCACTGCCACCGAAGCGAAGCACGTTATCGGT GCCGAGGCTCCTTTGTGGTCGGAGCAAATCGACGATGTGACCATCTCCAGCGGGTTCTGGCCTCGCGCCGCTGCT CTTGGTGAGCTCGTCTGGTCTGGTAATCGTGACGCAGCGGGCAAAAAGCGCACCACCAACCTTACCCAGCGTCTG CTGAACTTCCGTGAATACCTGGTTGCCAACGGTGTGATGGCTACTGCTCTTGTGCCGAAGTATTGTCTGCAGCAC CCTCATGCTTGCGACTTTTATAAGAACCAGACTATAATCTCTTAA |
| Transcript | >Pro_DTO377G3_2|g9559.t1 ATGAAGTTCGCCTCTGTCCTGACTGTGCTCGGGGCCTTGTCGGTTTCCGCCGTCCAGGTGAATCCACTTCCCGCC CCCCGTAACATCACCTGGGGTTCCTCCGGTCCAATCCAAGTCAACCACTTGAATTTGAACGCCCATCACTCCTCT GTGGTCTCTCAAGCTTGGGAGCGAGCATGGGAGACTATCACCACCCTGCAATGGGTCCCCGCCGCTGTCGAGGCC CCGATTCCCTCCTACCCAGCCTTCCCTTCGACCCCTGTCTCCAAGGCCAAACGCGCGCCCTCCGCGGTCCACAAC GTCAATGTCCATGTGGTGGACAGCGATGCCGATCTCCAACACGGCGTGGATGAATCCTATACACTGGTGGTGGCC AAGGGCGGCATCCAGATCAATGCGCAGACGGTATGGGGTGTGTTGCACGCGTTCACCACCCTGCAGCAAATTGTC ATCTCAGATGGCAAGGGCGGCTTGATCATTGAACAGCCGGTCGAGATCAAGGATGCCCCGCTGTACCCCTACCGT GGCATCATGGTAGACACCGGTCGCAACTTCATCACCGTTCGCAAGATCTTCGAGCAGATCGACGGTATGGCCCTG TCCAAGCTTAATGTCCTTCACTGGCACTTGGACGATGCGCAGTCATGGCCCATGCAGATGAGCTCCTACCCCGAG ATGACCAAAGATGCCTACTCGACTCGCGAAATCTACACCGAGAAAGACATCCGCCGCGTGATTGCCTACGCCCGC GCCCGAGGTGTCCGTGTCATCCCCGAGGTCGACATGCCCGGCCACTCTGCTTCAGGCTGGCAGCAGGTCGACCCG GAGATCGTGGCGTGTGCCAACAGCTGGTGGTCGAATGATGTGTGGGCGGAGCACACCGCGGTCGAGCCGAACCCT GGCCAGCTCGATATCATCTATCCCAAGACCTACGAAGTGGTCAAGAATGTGTACCACGAATTGTCGCGTATCTTC GACGACAACTTCTTCCACGTTGGTGCTGATGAGATCCAGCCTAACTGCTACAACTTCAGCACTCACATCACCAAG TGGTTTGCCGAGGATCCTTCGCGCACCTACAGGGACCTTACCCAGTACTGGGTCGACCACTCCATGCCTATCTTC CGTAGTGTCGGTGAGCACCGTCGCCTCATGATGTGGGAGGACATTTTCCTCGCGACCGAGAGCGCGCACAACGTG TCCAAAGACATCGTCATGCAGACTTGGAACAACGGCATTGACAATATCAAGAAGCTCACCTCGGCCGGCTACGAC GTGGTCGTCTCGTCCTCCGATTTCCTCTACCTCGACTGCGGCCACGGCGGCGCTATCACCAACGACCCCCGTTAC AACGAGCAGAGCAACACTGACGGCGGCGTGACCTTCAACTACGGCGGCGCCGGTGGCTCCTGGTGCGCCCCCTAC AAGACCTGGCAGCGTATCTACGACTACGATTTCCTCACGAACCTCACTGCCACCGAAGCGAAGCACGTTATCGGT GCCGAGGCTCCTTTGTGGTCGGAGCAAATCGACGATGTGACCATCTCCAGCGGGTTCTGGCCTCGCGCCGCTGCT CTTGGTGAGCTCGTCTGGTCTGGTAATCGTGACGCAGCGGGCAAAAAGCGCACCACCAACCTTACCCAGCGTCTG CTGAACTTCCGTGAATACCTGGTTGCCAACGGTGTGATGGCTACTGCTCTTGTGCCGAAGTATTGTCTGCAGCAC CCTCATGCTTGCGACTTTTATAAGAACCAGACTATAATCTCTTAA |
| Gene | >Pro_DTO377G3_2|g9559.t1 ATGAAGTTCGCCTCTGTCCTGACTGTGCTCGGGGCCTTGTCGGTTTCCGCCGTCCAGGTGAATCCACTTCCCGCC CCCCGTAACATCACCTGGGGTTCCTCCGGTCCAATCCAAGTCAACCACTTGAATTTGAACGCCCATCACTCCTCT GTGGTCTCTCAAGCTTGGGAGCGAGCATGGGAGACTATCACCACCCTGCAATGGGTCCCCGCCGCTGTCGAGGCC CCGATTCCCTCCTACCCAGCCTTCCCTTCGACCCCTGTCTCCAAGGCCAAACGCGCGCCCTCCGCGGTCCACAAC GTCAATGTCCATGTGGTGGACAGCGATGCCGATCTCCAACACGGCGTGGATGAATCCTATACACTGGTGGTGGCC AAGGGCGGCATCCAGATCAATGCGCAGACGGTATGGGGTGTGTTGCACGCGTTCACCACCCTGCAGCAAATTGTC ATCTCAGATGGCAAGGGCGGCTTGATCATTGAACAGCCGGTCGAGATCAAGGATGCCCCGCTGTACCCCTACCGT GGCATCATGGTAGACACCGGTCGCAACTTCATCACCGTTCGCAAGATCTTCGAGCAGATCGACGGTATGGCCCTG TCCAAGCTTAATGTCCTTCACTGGCACTTGGACGATGCGCAGTCATGGCCCATGCAGATGAGCTCCTACCCCGAG ATGACCAAAGATGCCTACTCGACTCGCGAAATCTACACCGAGAAAGACATCCGCCGCGTGATTGCCTACGCCCGC GCCCGAGGTGTCCGTGTCATCCCCGAGGTCGACATGCCCGGCCACTCTGCTTCAGGCTGGCAGCAGGTCGACCCG GAGATCGTGGCGTGTGCCAACAGCTGGTGGTCGAATGATGTGTGGGCGGAGCACACCGCGGTCGAGCCGAACCCT GGCCAGCTCGATATCATCTATCCCAAGACCTACGAAGTGGTCAAGAATGTGTACCACGAATTGTCGCGTATCTTC GACGACAACTTCTTCCACGTTGGTGCTGATGAGATCCAGCCTAACTGCTACAACTTCAGCACTCACATCACCAAG TGGTTTGCCGAGGATCCTTCGCGCACCTACAGGGACCTTACCCAGTACTGGGTCGACCACTCCATGCCTATCTTC CGTAGTGTCGGTGAGCACCGTCGCCTCATGATGTGGGAGGACATTTTCCTCGCGACCGAGAGCGCGCACAACGTG TCCAAAGACATCGTCATGCAGACTTGGAACAACGGCATTGACAATATCAAGAAGCTCACCTCGGCCGGCTACGAC GTGGTCGTCTCGTCCTCCGATTTCCTCTACCTCGACTGCGGCCACGGCGGCGCTATCACCAACGACCCCCGTTAC AACGAGCAGAGCAACACTGACGGCGGCGTGACCTTCAACTACGGCGGCGCCGGTGGCTCCTGGTGCGCCCCCTAC AAGACCTGGCAGCGTATCTACGACTACGATTTCCTCACGAACCTCACTGCCACCGAAGCGAAGCACGTTATCGGT GCCGAGGCTCCTTTGTGGTCGGAGCAAATCGACGATGTGACCATCTCCAGCGGGTTCTGGCCTCGCGCCGCTGCT CTTGGTGAGCTCGTCTGGTCTGGTAATCGTGACGCAGCGGGCAAAAAGCGCACCACCAACCTTACCCAGCGTCTG CTGAACTTCCGTGAATACCTGGTTGCCAACGGTGTGATGGCTACTGCTCTTGTGCCGAAGTATTGTCTGCAGCAC CCTCATGCTTGCGACTTTTATAAGAACCAGACTATAATCTCTTAA |