© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g9556.t1 |
| Gene name | |
| Location | scaffold_51:24008..26721 |
| Strand | - |
| Gene length (bp) | 2713 |
| Transcript length (bp) | 1530 |
| Coding sequence length (bp) | 1530 |
| Protein length (aa) | 510 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01490 | Aa_trans | Transmembrane amino acid transporter protein | 9.1E-42 | 55 | 436 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 42 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 60 | 82 | 22 |
| 2 | 87 | 106 | 19 |
| 3 | 133 | 155 | 22 |
| 4 | 159 | 181 | 22 |
| 5 | 193 | 215 | 22 |
| 6 | 230 | 252 | 22 |
| 7 | 265 | 287 | 22 |
| 8 | 307 | 326 | 19 |
| 9 | 347 | 369 | 22 |
| 10 | 379 | 401 | 22 |
| 11 | 414 | 436 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 9.06 | 3.69 | 14.42 |
| 5d_25C | Five days - 25 degrees Celsius | 13.08 | 5.99 | 20.17 |
| 7d_25C | Seven days - 25 degrees Celsius | 16.44 | 7.96 | 24.93 |
| 10d_25C | Ten days - 25 degrees Celsius | 19.40 | 9.78 | 29.02 |
| 7d_15C | Seven days - 15 degrees Celsius | 7.58 | 2.91 | 12.25 |
| 7d_30C | Seven days - 30 degrees Celsius | 14.95 | 7.08 | 22.83 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.271239 | no |
| 3d_25C | 7d_25C | 0.049197 | yes |
| 3d_25C | 7d_15C | 0.676822 | no |
| 3d_25C | 7d_30C | 0.098604 | no |
| 3d_25C | 10d_25C | 0.008469 | yes |
| 5d_25C | 7d_25C | 0.513242 | no |
| 5d_25C | 7d_15C | 0.083951 | no |
| 5d_25C | 7d_30C | 0.735537 | no |
| 5d_25C | 10d_25C | 0.180075 | no |
| 7d_25C | 7d_15C | 0.010735 | yes |
| 7d_25C | 7d_30C | 0.817182 | no |
| 7d_25C | 10d_25C | 0.640378 | no |
| 7d_15C | 7d_30C | 0.024170 | yes |
| 7d_15C | 10d_25C | 0.001804 | yes |
| 7d_30C | 10d_25C | 0.404858 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g9556.t1 MSPSHSALDFDSNEKSPYINPADLMSDPEKFEVPKVRQDAFGDEEFAEVKYKVLRWWQCGLLMVAETVSLGVLSL PAAVAALGLLPAILVLVFLGLMATYTGYVIGQMKWRYPHICTFADAGEVIAGKWGREFLGAAQIVFFIFIMASHL LTFTVAMNTITNHGTCSIVFGIVGMVISFICSLPRTLEKMSWLSIVSFVSIMTSVIIVMIAVGITAPGQGVVAVV DTNLYHGFSAVCNIVFAFCGHAAFFGLMAELRNPKDFTKSLCLLQGIDMGLYITAALVIYRYAGDDVTSPALGSA SPMVAKIAYGISLPTIIIAGVINGHVAFKYVYLRVFEGTDRMHKRDWIATGSWVGIALALWTMAWIISAAIPVFS NLLSLITALFASWFTYGLSGIFWLFMNKGLWFSSPRKIALTLLNIVVISVGAALCGLGLWVSGKALHDNPSIQGT VSTYDEACSFCDDTDGSEINLQRDQKREPPKPDDQIFKDFTHSKDSKITPSATRIPDGG* |
| Coding | >Pro_DTO377G3_2|g9556.t1 ATGAGCCCCTCGCATTCTGCATTGGATTTCGATTCCAATGAGAAGAGTCCCTATATAAATCCCGCGGACTTGATG TCTGATCCGGAGAAGTTTGAGGTCCCGAAAGTCAGACAAGATGCCTTTGGCGACGAGGAGTTCGCGGAGGTCAAG TACAAAGTACTCAGGTGGTGGCAATGTGGTCTGCTGATGGTTGCTGAAACGGTATCACTGGGTGTGCTCTCACTG CCCGCCGCTGTGGCAGCTCTGGGACTACTTCCAGCGATCCTCGTCTTGGTCTTCCTAGGTTTAATGGCCACATAC ACCGGCTATGTGATCGGTCAGATGAAATGGAGATATCCACACATCTGCACGTTTGCAGACGCCGGTGAGGTTATA GCAGGGAAATGGGGACGGGAATTCCTCGGCGCTGCACAGATCGTGTTCTTCATCTTTATCATGGCCAGCCACCTG TTGACCTTCACCGTTGCCATGAACACCATCACAAACCACGGCACCTGCTCCATCGTCTTTGGCATCGTTGGCATG GTCATCTCATTCATCTGCTCGTTACCTCGCACTCTGGAAAAGATGTCATGGCTATCCATCGTTTCATTCGTAAGC ATCATGACATCAGTCATAATTGTCATGATCGCCGTCGGCATCACAGCACCCGGACAGGGAGTTGTCGCAGTCGTC GACACAAACCTCTACCACGGCTTCTCAGCAGTCTGCAATATCGTCTTCGCTTTCTGCGGCCACGCGGCCTTCTTC GGCCTAATGGCCGAGCTCAGGAACCCAAAAGACTTCACAAAATCCCTCTGTCTCCTGCAAGGCATCGACATGGGC CTGTACATCACCGCCGCGTTAGTAATCTACCGGTACGCCGGCGACGACGTGACTTCGCCAGCACTGGGCTCCGCC TCGCCGATGGTCGCGAAAATCGCGTACGGCATCTCGCTGCCGACTATCATCATCGCCGGTGTCATCAACGGCCAC GTCGCGTTCAAGTATGTCTACCTGCGTGTTTTCGAGGGTACGGACCGCATGCACAAGCGTGACTGGATCGCTACG GGCTCGTGGGTCGGTATTGCGCTTGCGCTGTGGACCATGGCGTGGATTATTTCCGCTGCGATTCCCGTGTTTAGT AACCTGCTCAGCTTGATCACGGCGCTCTTTGCTAGTTGGTTTACGTATGGCTTGAGTGGGATCTTTTGGTTGTTT ATGAATAAGGGTCTGTGGTTCTCGTCGCCGAGGAAGATTGCCCTCACTTTGTTGAATATCGTTGTTATTTCTGTT GGTGCTGCGTTGTGCGGTCTTGGTCTTTGGGTCTCGGGCAAAGCTCTCCATGATAACCCTAGCATTCAAGGCACT GTAAGCACATATGATGAAGCTTGCTCATTTTGTGACGACACTGACGGTTCTGAAATCAATCTTCAACGAGACCAA AAGAGAGAGCCCCCGAAGCCAGATGATCAGATATTCAAGGATTTCACGCATTCAAAGGATAGCAAGATTACGCCG TCGGCAACCCGAATTCCAGATGGAGGTTAG |
| Transcript | >Pro_DTO377G3_2|g9556.t1 ATGAGCCCCTCGCATTCTGCATTGGATTTCGATTCCAATGAGAAGAGTCCCTATATAAATCCCGCGGACTTGATG TCTGATCCGGAGAAGTTTGAGGTCCCGAAAGTCAGACAAGATGCCTTTGGCGACGAGGAGTTCGCGGAGGTCAAG TACAAAGTACTCAGGTGGTGGCAATGTGGTCTGCTGATGGTTGCTGAAACGGTATCACTGGGTGTGCTCTCACTG CCCGCCGCTGTGGCAGCTCTGGGACTACTTCCAGCGATCCTCGTCTTGGTCTTCCTAGGTTTAATGGCCACATAC ACCGGCTATGTGATCGGTCAGATGAAATGGAGATATCCACACATCTGCACGTTTGCAGACGCCGGTGAGGTTATA GCAGGGAAATGGGGACGGGAATTCCTCGGCGCTGCACAGATCGTGTTCTTCATCTTTATCATGGCCAGCCACCTG TTGACCTTCACCGTTGCCATGAACACCATCACAAACCACGGCACCTGCTCCATCGTCTTTGGCATCGTTGGCATG GTCATCTCATTCATCTGCTCGTTACCTCGCACTCTGGAAAAGATGTCATGGCTATCCATCGTTTCATTCGTAAGC ATCATGACATCAGTCATAATTGTCATGATCGCCGTCGGCATCACAGCACCCGGACAGGGAGTTGTCGCAGTCGTC GACACAAACCTCTACCACGGCTTCTCAGCAGTCTGCAATATCGTCTTCGCTTTCTGCGGCCACGCGGCCTTCTTC GGCCTAATGGCCGAGCTCAGGAACCCAAAAGACTTCACAAAATCCCTCTGTCTCCTGCAAGGCATCGACATGGGC CTGTACATCACCGCCGCGTTAGTAATCTACCGGTACGCCGGCGACGACGTGACTTCGCCAGCACTGGGCTCCGCC TCGCCGATGGTCGCGAAAATCGCGTACGGCATCTCGCTGCCGACTATCATCATCGCCGGTGTCATCAACGGCCAC GTCGCGTTCAAGTATGTCTACCTGCGTGTTTTCGAGGGTACGGACCGCATGCACAAGCGTGACTGGATCGCTACG GGCTCGTGGGTCGGTATTGCGCTTGCGCTGTGGACCATGGCGTGGATTATTTCCGCTGCGATTCCCGTGTTTAGT AACCTGCTCAGCTTGATCACGGCGCTCTTTGCTAGTTGGTTTACGTATGGCTTGAGTGGGATCTTTTGGTTGTTT ATGAATAAGGGTCTGTGGTTCTCGTCGCCGAGGAAGATTGCCCTCACTTTGTTGAATATCGTTGTTATTTCTGTT GGTGCTGCGTTGTGCGGTCTTGGTCTTTGGGTCTCGGGCAAAGCTCTCCATGATAACCCTAGCATTCAAGGCACT GTAAGCACATATGATGAAGCTTGCTCATTTTGTGACGACACTGACGGTTCTGAAATCAATCTTCAACGAGACCAA AAGAGAGAGCCCCCGAAGCCAGATGATCAGATATTCAAGGATTTCACGCATTCAAAGGATAGCAAGATTACGCCG TCGGCAACCCGAATTCCAGATGGAGGTTAG |
| Gene | >Pro_DTO377G3_2|g9556.t1 ATGAGCCCCTCGCATTCTGCATTGGATTTCGATTCCAATGAGAAGAGTCCCTATATAAATCCCGCGGACTTGATG TCTGATCCGGAGAAGTTTGAGGTCCCGAAAGTCAGACAAGATGCCTTTGGCGACGAGGAGTTCGCGGAGGTCAAG TACAAAGTACTCAGGTGGTGGTATGTTTCATAGCTCGAAGTGGTAGCTCTGTTATTAACGTATATCTTGTTAGGC AATGTGGTCTGCGTATGTGATAATATGCTATATCAAACCAACCCTAATCTAACATTCTATTAGTGATGGTTGCTG AAACGGTATCACTGGGTGTGCTCTCACTGCCCGCCGCTGTGGCAGCTCTGGGACTACTTCCGTAAGCATACCTTC TGCCTCAAGTGCAGGAATTGAAGCTAATCATATCCAGAGCGATCCTCGTCTTGGTCTTCCTAGGTTTAATGGCCA CATACACCGGCTATGTGATCGGTCAGATGAAATGGAGATATCCACACATCTGCACGTTTGCAGACGCCGGTGAGG TTATAGCAGGGAAATGGGGACGGGAATTCCTCGGCGCTGCACAGATCGTGTTCTTCATCTTTATCATGGCCAGCC ACCTGTTGACCTTCACCGTTGCCATGAACACCATCACAAACCACGGCACCTGCTCCATCGTCTTTGGCATCGTTG GCATGGTCATCTCATTCATCTGCTCGTTACCTCGCACTCTGGAAAAGATGTCATGGCTATCCATCGTTTGTACGT TTCCATACACCCCATTGAGAACCCAATTAACAATCCCAGCATTCGTAAGCATCATGACATCAGTCATAATTGTCA TGATCGCCGTCGGCATCACAGCACCCGGACAGGGAGTTGTCGCAGTCGTCGACACAAACCTCTACCACGGCTTCT CAGCAGTCTGCAATATCGTCTTCGCTTTCTGCGGCCACGCGGCCTTCTTCGGCCTAATGGCCGAGCTCAGGAACC CAAAAGACTTCACAAAATCCCTCTGTCTCCTGCAAGGCATCGACATGGGCCTGTACATCACCGCCGCGTTAGTAA TCTACCGGTACGCCGGCGACGACGTGACTTCGCCAGCACTGGGCTCCGCCTCGCCGATGGTCGCGAAAATCGCGT ACGGCATCTCGCTGCCGACTATCATCATCGCCGGTGTCATCAACGGCCACGTCGCGTTCAAGTATGTCTACCTGC GTGTTTTCGAGGGTACGGACCGCATGCACAAGCGTGACTGGATCGCTACGGGCTCGTGGGTCGGTATTGCGCTTG CGCTGTGGACCATGGCGTGGATTATTTCCGCTGCGATTCCCGTGTTTAGTAACCTGCTCAGCTTGATCACGGCGC TCTTTGCTAGTTGGTTTACGTATGGCTTGAGTGGGATCTTTTGGTTGTTTATGAATAAGGGTCTGTGGTTCTCGT CGCCGAGGAAGATTGCCCTCACTTTGTTGAATATCGTTGTTATTTCTGTTGGTGCTGCGTTGTGCGGTCTTGGTC TTTGGGTCTCGGGCAAAGCTCTCCATGATAACCCTAGCAGTGAGAGCTTTTCTTGTGGGAATAATGCTTAGCTGC ATGCGTTTTCTGTTGGGTTAGCCTGGTTTATATAAAAGTGTATCTGGGAAGGGGTTTCTGGCGTTCTGGTTTTGC ATCTGGGGCATCTGTTTTGACACTTTCGATACCTTGTTTCGATCTCGAGTTGCTGCTTGAGTTGGCTTTGCCTTG GATACTTGTTTCATACACACACTATAGTGGTGTTTGGAGATAGAGGTGAACTAATATAATAATACATAGTTTTAG TTTCTGACCCTGTAGCAGTTATAAGGCTGAACTCGCGCAGGCGATCAAGCAGACATAGGTTACAGGTTTATTTCA GTCAAGCATGCGTTCGCGAATGTGCGTTATATAACCGCAGTCTTGTGTGGGAGCATACCGACCCGGCTGAAGCTT GGAACAGGGTTGGGATTGCGCAGACGTGGTAGTCTGTGCTTGTTGGCGGGCAGAGGATTGCTGCTATGGGTATAG TGATTCGTATTTCATATTCTGTGAACGCTTTGTTGATTCTGTTGTTGCGAGGTGGAACGGAGCCAGGTGGCACTG CCGAAGGAGTAAAATATGGAGGGTGTATGTGTTGCAGGCACCTTAGAAGGTTGGGGAAGGGAAAGGCTCGGTTTG TCTTCTCTGCTGGGGGTCAATCGGGGCACCTGGTTTTGATCCTCGGTGTCTCTAAACAGTTCGATTATCGAATGT GGGAATCCAGCATGGAATTTTCAGATCCTTTCAGTTGCGAACTTCGTCTGAGTGGAGATGAGAAGCGAGTAGTGA TGAGAGGCTGCCTGTGACAATATATTTTGTCCCTGGGATGGGCCATGGCTGCGAGCACGCTCTGCTAAGAATATT ACGTTGTAGGATTTGCATGAAAGATGGTAGCTCAGTCAAAATTTCATTTTGAAGTCGGTCTTGATTATCGGATAA GCCGAAGATCGGGGCTCGTGTTACGCTCACTGCTAACAGTCTGCTAGTTCAAGGCACTGTAAGCACATATGATGA AGCTTGCTCATTTTGTGACGACACTGACGGTTCTGAAATCAATCTTCAACGAGACCAAAAGAGAGAGCCCCCGAA GCCAGATGATCAGATATTCAAGGATTTCACGCATTCAAAGGATAGCAAGATTACGCCGTCGGCAACCCGAATTCC AGATGGAGGTTAG |