© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g9549.t1 |
| Gene name | |
| Location | scaffold_51:4435..6816 |
| Strand | + |
| Gene length (bp) | 2381 |
| Transcript length (bp) | 2211 |
| Coding sequence length (bp) | 2211 |
| Protein length (aa) | 737 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01915 | Glyco_hydro_3_C | Glycosyl hydrolase family 3 C-terminal domain | 2.2E-54 | 356 | 602 |
| PF00933 | Glyco_hydro_3 | Glycosyl hydrolase family 3 N terminal domain | 3.5E-37 | 75 | 312 |
| PF14310 | Fn3-like | Fibronectin type III-like domain | 9.2E-27 | 654 | 724 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds | Yes |
| GO:0005975 | carbohydrate metabolic process | Yes |
| GO:0016798 | hydrolase activity, acting on glycosyl bonds | No |
| GO:0008150 | biological_process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0008152 | metabolic process | No |
| GO:0003674 | molecular_function | No |
| GO:0003824 | catalytic activity | No |
| GO:0016787 | hydrolase activity | No |
| GO:0071704 | organic substance metabolic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 16 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 82.83 | 50.04 | 115.62 |
| 5d_25C | Five days - 25 degrees Celsius | 46.09 | 26.50 | 65.69 |
| 7d_25C | Seven days - 25 degrees Celsius | 37.81 | 21.20 | 54.42 |
| 10d_25C | Ten days - 25 degrees Celsius | 22.04 | 11.72 | 32.36 |
| 7d_15C | Seven days - 15 degrees Celsius | 39.19 | 18.66 | 59.73 |
| 7d_30C | Seven days - 30 degrees Celsius | 102.52 | 56.22 | 148.82 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.007091 | yes |
| 3d_25C | 7d_25C | 0.000700 | yes |
| 3d_25C | 7d_15C | 0.002761 | yes |
| 3d_25C | 7d_30C | 0.440543 | no |
| 3d_25C | 10d_25C | 0.000700 | yes |
| 5d_25C | 7d_25C | 0.482586 | no |
| 5d_25C | 7d_15C | 0.620390 | no |
| 5d_25C | 7d_30C | 0.000700 | yes |
| 5d_25C | 10d_25C | 0.002297 | yes |
| 7d_25C | 7d_15C | 0.931247 | no |
| 7d_25C | 7d_30C | 0.000700 | yes |
| 7d_25C | 10d_25C | 0.029538 | yes |
| 7d_15C | 7d_30C | 0.000700 | yes |
| 7d_15C | 10d_25C | 0.032838 | yes |
| 7d_30C | 10d_25C | 0.000700 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g9549.t1 MQNLFLSALAFSVAADAYGSGAAGWDAAYSKARAVLPKLNQTEKVGIATGVGWEGGPCVGNTYPASSINYPSLCL QDSPLGIRFANPVTAFPAGINAGATWDRSLLYARGVAMGEEAKGLGVHVQLGPVAGPLGKNPNGGRNWEGFSVDP YLSGVAMEETIQGMQDSGVQACAKHWLGNEQEHNRDTMSSNIGDRATHELYVWPFMNAVRANVASVMCSYNKLNE TWACESDAILNDLMKDELGFPGYIMTDWNAQHTSVNSALAGLDMTMPGSDFNSPPGSIFWGPNLVQAVANGSVPQ ARLDDMATRILAAWYLLGQDQGYPEVTFSSWNGGKAAADVTGDHATVARTVARDSIVLLKNQEHTLPLRQPKSLA IIGQDAIVNPNGPNACGDRGCNTGTLAMGWGSGTSEFPYLVGPLDAIQVQARKDGTNIIQSTTDNTTAAVSAAAS AETAVVFINADSGEGYITVEGNVGDRNNLDPWHNGNELVKSVAAVNSNVIVVVHSVGPIILETILAQPSVKAIVW AGLPGQESGNALVDVLYGSTSPSGKLPYTIAKQFSDYGAGWNSGLDDNFVEDLFIDYRHFDKNGIDPRYEFGYGL SYTTFNYTGLVVSVAATAGPSNGRIVPGGAEEIFESVGTISIGVENTGEVAGAEVAQLYLGLPDSAPSTPPKQLR GFQKLNLQPGEPGTATFELTRRDLSYWEVQTQKWVVPSGTFIVYVGTSSRDIREDGKFTVT* |
| Coding | >Pro_DTO377G3_2|g9549.t1 ATGCAGAACCTTTTTCTCTCTGCTCTGGCCTTCAGTGTCGCAGCCGATGCCTATGGCTCAGGGGCTGCCGGCTGG GACGCGGCTTATTCAAAGGCCCGAGCGGTCCTTCCCAAGCTGAATCAGACCGAAAAAGTCGGGATTGCCACTGGC GTCGGTTGGGAAGGAGGGCCCTGCGTGGGCAACACTTATCCAGCTAGCTCGATCAACTATCCCTCTTTATGTCTA CAGGACTCACCCTTGGGAATTCGCTTTGCCAATCCGGTCACGGCTTTCCCCGCCGGGATCAACGCCGGAGCAACT TGGGACCGTAGTCTCCTGTACGCGCGCGGTGTTGCCATGGGCGAGGAAGCCAAAGGTCTGGGCGTGCACGTCCAG CTAGGACCAGTCGCTGGGCCTCTAGGAAAGAATCCCAATGGCGGTAGGAACTGGGAAGGGTTCTCGGTCGACCCG TATCTCAGCGGAGTTGCCATGGAAGAGACAATCCAGGGTATGCAAGATTCGGGCGTTCAGGCCTGCGCCAAGCAC TGGCTTGGGAACGAGCAAGAGCACAACCGCGATACCATGAGCTCTAACATCGGCGACCGCGCGACGCATGAGTTG TATGTATGGCCGTTCATGAACGCAGTTCGGGCAAATGTCGCGTCCGTCATGTGCTCCTATAACAAATTGAACGAG ACTTGGGCATGTGAGAGTGATGCTATCCTGAACGATCTAATGAAGGACGAGCTAGGTTTCCCTGGCTACATTATG ACCGATTGGAATGCGCAGCACACTAGTGTCAACAGTGCTTTGGCTGGACTCGACATGACCATGCCTGGCAGTGAT TTTAATAGCCCGCCCGGCAGCATATTCTGGGGACCAAATCTCGTGCAGGCCGTTGCTAATGGCTCTGTACCTCAG GCGCGTCTGGATGACATGGCAACGCGTATCCTGGCAGCTTGGTATCTTCTTGGTCAGGATCAAGGCTACCCCGAG GTGACTTTCAGCTCTTGGAATGGCGGAAAAGCCGCTGCCGATGTAACAGGAGACCATGCCACTGTCGCCCGCACC GTGGCCCGTGATTCGATTGTCCTATTGAAGAATCAGGAACATACTCTGCCTCTACGGCAACCTAAAAGCCTGGCT ATTATTGGGCAAGATGCCATCGTCAATCCCAATGGTCCCAATGCATGTGGAGACCGCGGCTGCAATACCGGCACG CTAGCTATGGGCTGGGGCAGTGGCACATCGGAGTTTCCCTACCTCGTTGGTCCTCTCGACGCAATCCAAGTTCAG GCCAGAAAGGATGGTACGAACATTATCCAGAGTACGACCGACAATACCACGGCTGCTGTCTCGGCTGCTGCATCG GCGGAGACTGCTGTGGTTTTCATTAACGCAGACAGCGGTGAAGGTTACATTACAGTGGAGGGCAACGTTGGTGAC AGGAACAATCTCGATCCCTGGCACAACGGAAACGAGCTTGTCAAGTCCGTCGCAGCAGTGAACAGCAACGTCATC GTAGTCGTGCATAGTGTGGGGCCCATTATCCTAGAGACCATCCTAGCGCAGCCCTCAGTGAAAGCAATTGTCTGG GCCGGGCTACCAGGTCAAGAAAGCGGAAACGCCCTGGTTGACGTGCTCTATGGCAGCACCTCTCCAAGCGGTAAG CTTCCTTACACGATTGCCAAGCAGTTTTCAGACTACGGGGCCGGCTGGAACAGTGGGCTCGATGACAATTTCGTT GAAGATTTGTTTATTGACTACCGCCACTTCGACAAGAACGGCATCGACCCGCGCTACGAGTTTGGCTATGGCTTA TCGTATACGACTTTTAATTACACTGGACTTGTGGTTAGCGTTGCTGCCACAGCTGGGCCATCAAATGGACGAATT GTCCCTGGCGGGGCAGAGGAAATTTTCGAGTCGGTCGGCACTATCTCTATCGGTGTCGAAAACACTGGCGAGGTA GCTGGTGCTGAGGTTGCTCAGCTCTATCTTGGCCTGCCGGACTCCGCCCCAAGTACTCCCCCCAAGCAGCTGCGA GGGTTCCAGAAGTTGAATCTCCAGCCGGGAGAGCCGGGAACAGCTACTTTCGAGCTCACTCGGCGAGACTTGAGC TACTGGGAAGTGCAGACACAAAAGTGGGTTGTACCTAGTGGTACCTTCATTGTCTATGTTGGAACCTCCAGTCGG GATATTCGTGAGGATGGAAAGTTCACTGTCACTTAG |
| Transcript | >Pro_DTO377G3_2|g9549.t1 ATGCAGAACCTTTTTCTCTCTGCTCTGGCCTTCAGTGTCGCAGCCGATGCCTATGGCTCAGGGGCTGCCGGCTGG GACGCGGCTTATTCAAAGGCCCGAGCGGTCCTTCCCAAGCTGAATCAGACCGAAAAAGTCGGGATTGCCACTGGC GTCGGTTGGGAAGGAGGGCCCTGCGTGGGCAACACTTATCCAGCTAGCTCGATCAACTATCCCTCTTTATGTCTA CAGGACTCACCCTTGGGAATTCGCTTTGCCAATCCGGTCACGGCTTTCCCCGCCGGGATCAACGCCGGAGCAACT TGGGACCGTAGTCTCCTGTACGCGCGCGGTGTTGCCATGGGCGAGGAAGCCAAAGGTCTGGGCGTGCACGTCCAG CTAGGACCAGTCGCTGGGCCTCTAGGAAAGAATCCCAATGGCGGTAGGAACTGGGAAGGGTTCTCGGTCGACCCG TATCTCAGCGGAGTTGCCATGGAAGAGACAATCCAGGGTATGCAAGATTCGGGCGTTCAGGCCTGCGCCAAGCAC TGGCTTGGGAACGAGCAAGAGCACAACCGCGATACCATGAGCTCTAACATCGGCGACCGCGCGACGCATGAGTTG TATGTATGGCCGTTCATGAACGCAGTTCGGGCAAATGTCGCGTCCGTCATGTGCTCCTATAACAAATTGAACGAG ACTTGGGCATGTGAGAGTGATGCTATCCTGAACGATCTAATGAAGGACGAGCTAGGTTTCCCTGGCTACATTATG ACCGATTGGAATGCGCAGCACACTAGTGTCAACAGTGCTTTGGCTGGACTCGACATGACCATGCCTGGCAGTGAT TTTAATAGCCCGCCCGGCAGCATATTCTGGGGACCAAATCTCGTGCAGGCCGTTGCTAATGGCTCTGTACCTCAG GCGCGTCTGGATGACATGGCAACGCGTATCCTGGCAGCTTGGTATCTTCTTGGTCAGGATCAAGGCTACCCCGAG GTGACTTTCAGCTCTTGGAATGGCGGAAAAGCCGCTGCCGATGTAACAGGAGACCATGCCACTGTCGCCCGCACC GTGGCCCGTGATTCGATTGTCCTATTGAAGAATCAGGAACATACTCTGCCTCTACGGCAACCTAAAAGCCTGGCT ATTATTGGGCAAGATGCCATCGTCAATCCCAATGGTCCCAATGCATGTGGAGACCGCGGCTGCAATACCGGCACG CTAGCTATGGGCTGGGGCAGTGGCACATCGGAGTTTCCCTACCTCGTTGGTCCTCTCGACGCAATCCAAGTTCAG GCCAGAAAGGATGGTACGAACATTATCCAGAGTACGACCGACAATACCACGGCTGCTGTCTCGGCTGCTGCATCG GCGGAGACTGCTGTGGTTTTCATTAACGCAGACAGCGGTGAAGGTTACATTACAGTGGAGGGCAACGTTGGTGAC AGGAACAATCTCGATCCCTGGCACAACGGAAACGAGCTTGTCAAGTCCGTCGCAGCAGTGAACAGCAACGTCATC GTAGTCGTGCATAGTGTGGGGCCCATTATCCTAGAGACCATCCTAGCGCAGCCCTCAGTGAAAGCAATTGTCTGG GCCGGGCTACCAGGTCAAGAAAGCGGAAACGCCCTGGTTGACGTGCTCTATGGCAGCACCTCTCCAAGCGGTAAG CTTCCTTACACGATTGCCAAGCAGTTTTCAGACTACGGGGCCGGCTGGAACAGTGGGCTCGATGACAATTTCGTT GAAGATTTGTTTATTGACTACCGCCACTTCGACAAGAACGGCATCGACCCGCGCTACGAGTTTGGCTATGGCTTA TCGTATACGACTTTTAATTACACTGGACTTGTGGTTAGCGTTGCTGCCACAGCTGGGCCATCAAATGGACGAATT GTCCCTGGCGGGGCAGAGGAAATTTTCGAGTCGGTCGGCACTATCTCTATCGGTGTCGAAAACACTGGCGAGGTA GCTGGTGCTGAGGTTGCTCAGCTCTATCTTGGCCTGCCGGACTCCGCCCCAAGTACTCCCCCCAAGCAGCTGCGA GGGTTCCAGAAGTTGAATCTCCAGCCGGGAGAGCCGGGAACAGCTACTTTCGAGCTCACTCGGCGAGACTTGAGC TACTGGGAAGTGCAGACACAAAAGTGGGTTGTACCTAGTGGTACCTTCATTGTCTATGTTGGAACCTCCAGTCGG GATATTCGTGAGGATGGAAAGTTCACTGTCACTTAG |
| Gene | >Pro_DTO377G3_2|g9549.t1 ATGCAGAACCTTTTTCTCTCTGCTCTGGCCTTCAGTGTCGCAGCCGATGCCTATGGCTCAGGGGCTGCCGGCTGG GACGCGGCTTATTCAAAGGCCCGAGCGGTCCTTCCCAAGCTGAATCAGACCGAAAAAGTCGGGATTGCCACTGGC GTCGGTTGGGAAGGAGGGCCCTGCGTGGGCAACACTTATCCAGCTAGCTCGATCAACTATCCCTCTTTATGTCTA CAGGACTCACCCTTGGGAATTCGCTTTGCCAATCCGGTCACGGCTTTCCCCGCCGGGATCAACGCCGGAGCAACT TGGGACCGTAGTCTCCTGTACGCGCGCGGTGTTGCCATGGGCGAGGAAGCCAAAGGTCTGGGCGTGCACGTCCAG CTAGGACCAGTCGCTGGGCCTCTAGGAAAGAATCCCAATGGCGGTAGGAACTGGGAAGGGTTCTCGGTCGACCCG TATCTCAGCGGAGTTGCCATGGAAGAGACAATCCAGGGTATGCAAGATTCGGGCGTTCAGGCCTGCGCCAAGGTA CGCTGGCTTCCACTCTGTTCATATTCAGTGCGTTCTGACCATGGTAAAGCACTGGCTTGGGAACGAGCAAGAGCA CAACCGCGATACCATGAGCTCTAACATCGGCGACCGCGCGACGCATGAGTTGTATGTATGGCCGTTCATGAACGC AGTTCGGGCAAATGTCGCGTCCGTCATGTGCTCCTATAACAAATTGAACGAGACTTGGGCATGTGAGAGTGATGC TATCCTGAACGATCTAATGAAGGACGAGCTAGGTTTCCCTGGCTACATTATGACCGATTGGAATGCGCAGCACAC TAGTGTCAACAGTGCTTTGGCTGGACTCGACATGACCATGCCTGGCAGTGATTTTAATAGCCCGCCCGGCAGCAT ATTCTGGGGACCAAATCTCGTGCAGGCCGTTGCTAATGGCTCTGTACCTCAGGCGCGTCTGGATGACATGGCAAC GCGTATCCTGGCAGCTTGGTATCTTCTTGGTCAGGATCAAGGCTACCCCGAGGTGACTTTCAGCTCTTGGAATGG CGGAAAAGCCGCTGCCGATGTAACAGGAGACCATGCCACTGTCGCCCGCACCGTGGCCCGTGATTCGATTGTCCT ATTGAAGAATCAGGAACATACTCTGCCTCTACGGCAACCTAAAAGCCTGGCTATTATTGGGCAAGATGCCATCGT CAATCCCAATGGTCCCAATGCATGTGGAGACCGCGGCTGCAATACCGGCACGCTAGCTATGGGCTGGGGCAGTGG CACATCGGAGTTTCCCGTAAGCAAGCCAATGCCGGCAGATCAACCGCGAGTCCGATAAACTGACAATGACGCTCT AGTACCTCGTTGGTCCTCTCGACGCAATCCAAGTTCAGGCCAGAAAGGATGGTACGAACATTATCCAGAGTACGA CCGACAATACCACGGCTGCTGTCTCGGCTGCTGCATCGGCGGAGACTGCTGTGGTTTTCATTAACGCAGACAGCG GTGAAGGGTGAGTCGGACTTGTAACCGCACCTATGATGCATTGCAACTAACCCGTGCATTGCAGTTACATTACAG TGGAGGGCAACGTTGGTGACAGGAACAATCTCGATCCCTGGCACAACGGAAACGAGCTTGTCAAGTCCGTCGCAG CAGTGAACAGCAACGTCATCGTAGTCGTGCATAGTGTGGGGCCCATTATCCTAGAGACCATCCTAGCGCAGCCCT CAGTGAAAGCAATTGTCTGGGCCGGGCTACCAGGTCAAGAAAGCGGAAACGCCCTGGTTGACGTGCTCTATGGCA GCACCTCTCCAAGCGGTAAGCTTCCTTACACGATTGCCAAGCAGTTTTCAGACTACGGGGCCGGCTGGAACAGTG GGCTCGATGACAATTTCGTTGAAGATTTGTTTATTGACTACCGCCACTTCGACAAGAACGGCATCGACCCGCGCT ACGAGTTTGGCTATGGCTTATCGTATACGACTTTTAATTACACTGGACTTGTGGTTAGCGTTGCTGCCACAGCTG GGCCATCAAATGGACGAATTGTCCCTGGCGGGGCAGAGGAAATTTTCGAGTCGGTCGGCACTATCTCTATCGGTG TCGAAAACACTGGCGAGGTAGCTGGTGCTGAGGTTGCTCAGCTCTATCTTGGCCTGCCGGACTCCGCCCCAAGTA CTCCCCCCAAGCAGCTGCGAGGGTTCCAGAAGTTGAATCTCCAGCCGGGAGAGCCGGGAACAGCTACTTTCGAGC TCACTCGGCGAGACTTGAGCTACTGGGAAGTGCAGACACAAAAGTGGGTTGTACCTAGTGGTACCTTCATTGTCT ATGTTGGAACCTCCAGTCGGGATATTCGTGAGGATGGAAAGTTCACTGTCACTTAG |