© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g9548.t1 |
| Gene name | |
| Location | scaffold_50:90827..93548 |
| Strand | + |
| Gene length (bp) | 2721 |
| Transcript length (bp) | 2541 |
| Coding sequence length (bp) | 2541 |
| Protein length (aa) | 847 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF18368 | Ig_GlcNase | Exo-beta-D-glucosaminidase Ig-fold domain | 6.7E-29 | 731 | 839 |
| PF00703 | Glyco_hydro_2 | Glycosyl hydrolases family 2 | 7.7E-11 | 213 | 330 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds | Yes |
| GO:0005975 | carbohydrate metabolic process | Yes |
| GO:0016798 | hydrolase activity, acting on glycosyl bonds | No |
| GO:0008150 | biological_process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0008152 | metabolic process | No |
| GO:0003674 | molecular_function | No |
| GO:0003824 | catalytic activity | No |
| GO:0016787 | hydrolase activity | No |
| GO:0071704 | organic substance metabolic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 17 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 0.61 | 0.06 | 1.17 |
| 5d_25C | Five days - 25 degrees Celsius | 0.49 | 0.00 | 0.99 |
| 7d_25C | Seven days - 25 degrees Celsius | 0.40 | 0.00 | 0.84 |
| 10d_25C | Ten days - 25 degrees Celsius | 0.18 | 0.00 | 0.47 |
| 7d_15C | Seven days - 15 degrees Celsius | 0.82 | 0.09 | 1.55 |
| 7d_30C | Seven days - 30 degrees Celsius | 0.76 | 0.06 | 1.47 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 1.000000 | no |
| 3d_25C | 7d_25C | 1.000000 | no |
| 3d_25C | 7d_15C | 0.642113 | no |
| 3d_25C | 7d_30C | 0.758129 | no |
| 3d_25C | 10d_25C | 1.000000 | no |
| 5d_25C | 7d_25C | 1.000000 | no |
| 5d_25C | 7d_15C | 0.397850 | no |
| 5d_25C | 7d_30C | 0.508825 | no |
| 5d_25C | 10d_25C | 1.000000 | no |
| 7d_25C | 7d_15C | 0.236169 | no |
| 7d_25C | 7d_30C | 0.324287 | no |
| 7d_25C | 10d_25C | 1.000000 | no |
| 7d_15C | 7d_30C | 0.922004 | no |
| 7d_15C | 10d_25C | 0.058823 | no |
| 7d_30C | 10d_25C | 0.069424 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g9548.t1 MHKICISLAFSACACAVTTGSEPLVATAGDIAAIPGWYLQSSTKVSEGMDVLSMPGKDVSSWNRVGSRGTVMAGL IENEVYNETELFYSDKMESIADPSTFDAPWLYREEFTLHPSAGKYFTLKTHGITSKADIYLNGVLVASSDEQQGS YGGHQYELTHHVKEGANCLLVCAFPTNYLRDFAQGFVDWNPYPADNGTGVWRNVEVSQTGAVSISSFRILTNFTH PNSEPVKVTFRTDLSNFESSGQQIMINGTVEGPDGSVAVQISETFDLKSKEKKAVSMSVSIVNPDIWWAALWGEQ PLYTIHASAIIRKPQKSVSDSSIRQKFGIRHVSSRLNKSNDTEFAVNGEPFQVIGAGYGPDIFLRFDIHREHPEL YDLADKMGLMVLAGWECCDKWEGWKYNDEADGVKWGKSDYPVVKAAMLHEAEMMQSHASMLGFLVGSDFWPNIQA TEIYLDALKVMDWPNPIIASASKRGYPEALGPSGMKMDGPYDWVPPNYWYNNEEGAASGFGSELGPGVGTPEIGS LKKFMSGAELETLWKEPDADQYHMSRYDSQFYDRKLYNNALFARYGEPSSLEDYIVKCQMTDYEATRSQFEAYGT QQNATRPATGIIYWMLNSAWPNLHWQLFDYYLSPMAAYFGTKVGAQNSGNRHIKVDLIDSNGEELSEATVESNTT PHSSKVVASLNGIKTVKDIGFLRLTLSDTKYEGFLSRNVYWLSPTTDVLDWSNSDWYTTPVTKFAKYTKLETLKP ATLNGSLHSLESPTDDGLTHAEVLLENQSAGPAVFIRLNAINALKSVEIAPLYWSDNYVTLWPKENLRLTVAFEG DIQHTVVEITGRNVEKVTLKV* |
| Coding | >Pro_DTO377G3_2|g9548.t1 ATGCATAAAATTTGCATTTCACTTGCTTTCAGTGCATGTGCCTGCGCAGTGACTACCGGCTCCGAACCCCTTGTT GCCACTGCTGGTGATATTGCTGCTATCCCGGGATGGTACCTCCAATCATCGACCAAAGTATCAGAAGGGATGGAT GTACTATCCATGCCGGGAAAAGATGTCTCCTCATGGAATCGGGTTGGTTCTCGTGGCACAGTTATGGCTGGGCTT ATTGAGAACGAGGTATACAACGAGACAGAATTGTTCTACTCGGATAAGATGGAATCTATCGCTGATCCCTCCACG TTCGACGCACCCTGGCTTTATCGAGAAGAGTTCACACTGCACCCATCCGCCGGCAAATATTTTACCCTAAAGACA CATGGAATCACATCCAAGGCAGACATATATCTGAACGGAGTGCTCGTTGCGTCAAGTGACGAGCAGCAAGGCTCC TATGGCGGCCATCAGTACGAACTGACCCATCATGTTAAGGAAGGAGCTAATTGTCTTCTCGTTTGTGCATTCCCA ACCAACTATCTTCGCGATTTTGCCCAGGGGTTTGTGGACTGGAATCCCTACCCAGCAGACAATGGAACCGGCGTT TGGCGAAATGTGGAGGTTTCTCAGACTGGAGCGGTTTCGATATCGTCGTTCCGCATCCTCACTAATTTTACTCAC CCCAATTCTGAGCCTGTGAAGGTCACCTTTCGGACTGATTTGAGCAATTTTGAATCTAGTGGTCAGCAAATAATG ATCAACGGCACCGTCGAAGGGCCAGATGGCTCGGTAGCTGTGCAAATTAGCGAGACATTTGACCTGAAGTCAAAA GAGAAAAAGGCGGTGTCTATGAGCGTGTCAATTGTGAACCCTGATATTTGGTGGGCTGCCCTTTGGGGTGAGCAG CCTCTATACACGATACATGCCAGCGCCATCATCCGAAAACCCCAGAAGTCAGTGTCAGACAGTTCAATTCGCCAA AAATTCGGGATTCGCCATGTATCATCGAGATTAAACAAGTCCAATGATACCGAGTTTGCTGTCAATGGCGAGCCC TTCCAGGTCATCGGAGCTGGTTATGGGCCGGATATCTTCTTGCGATTCGATATTCACAGGGAGCACCCAGAACTT TATGATCTCGCAGATAAGATGGGCTTGATGGTCCTGGCGGGATGGGAATGTTGTGACAAATGGGAAGGGTGGAAG TATAACGACGAGGCCGATGGTGTCAAATGGGGAAAGTCCGACTACCCAGTTGTGAAGGCAGCAATGCTGCATGAG GCAGAGATGATGCAGAGCCATGCTTCGATGCTTGGCTTTTTAGTGGGCTCAGACTTCTGGCCCAATATCCAAGCC ACCGAGATCTATTTAGACGCTCTCAAAGTCATGGATTGGCCTAATCCAATCATTGCATCAGCCAGCAAGCGTGGT TACCCCGAAGCTCTTGGGCCATCCGGAATGAAGATGGACGGCCCATACGATTGGGTACCCCCGAATTACTGGTAC AACAATGAAGAAGGAGCGGCATCTGGATTTGGATCTGAATTGGGTCCTGGAGTTGGTACCCCTGAGATTGGCAGC CTGAAAAAGTTCATGTCTGGTGCCGAGCTGGAAACACTTTGGAAAGAACCAGATGCAGACCAATATCATATGTCC CGTTATGATTCGCAATTTTACGACCGGAAGCTCTACAACAACGCTCTATTTGCTCGATACGGAGAGCCATCTAGC CTGGAGGACTACATCGTCAAATGTCAGATGACAGATTATGAGGCCACGCGATCCCAGTTTGAAGCTTACGGAACG CAACAAAATGCGACGCGACCTGCCACAGGGATTATTTATTGGATGTTAAATAGCGCCTGGCCGAATCTGCATTGG CAGTTGTTTGATTACTATCTCAGCCCTATGGCAGCCTACTTTGGCACCAAGGTTGGAGCGCAAAACAGCGGAAAT CGGCACATCAAGGTAGATCTCATTGATTCAAATGGCGAAGAACTCTCCGAGGCCACAGTGGAGAGCAACACAACG CCTCATTCCTCGAAGGTGGTGGCTTCGCTTAACGGAATTAAAACAGTCAAAGATATTGGCTTCCTCCGTCTCACA CTCAGTGATACCAAATATGAAGGTTTCCTTAGTCGCAATGTATACTGGCTCTCTCCTACCACGGATGTCTTGGAC TGGTCAAACTCTGATTGGTACACCACCCCAGTTACTAAGTTTGCCAAATACACTAAGCTAGAGACACTAAAACCG GCTACTTTGAATGGTTCATTACACAGCCTGGAGTCACCAACAGACGATGGTTTGACTCATGCTGAGGTCCTGCTC GAAAACCAATCTGCAGGGCCGGCAGTTTTCATTCGTCTGAATGCTATCAATGCACTCAAAAGTGTGGAAATTGCG CCGCTTTATTGGTCTGATAACTATGTGACTCTTTGGCCGAAAGAAAATCTGCGGTTAACTGTTGCATTTGAAGGA GATATTCAGCATACTGTGGTTGAAATTACAGGAAGGAATGTGGAGAAAGTGACTCTCAAGGTTTAA |
| Transcript | >Pro_DTO377G3_2|g9548.t1 ATGCATAAAATTTGCATTTCACTTGCTTTCAGTGCATGTGCCTGCGCAGTGACTACCGGCTCCGAACCCCTTGTT GCCACTGCTGGTGATATTGCTGCTATCCCGGGATGGTACCTCCAATCATCGACCAAAGTATCAGAAGGGATGGAT GTACTATCCATGCCGGGAAAAGATGTCTCCTCATGGAATCGGGTTGGTTCTCGTGGCACAGTTATGGCTGGGCTT ATTGAGAACGAGGTATACAACGAGACAGAATTGTTCTACTCGGATAAGATGGAATCTATCGCTGATCCCTCCACG TTCGACGCACCCTGGCTTTATCGAGAAGAGTTCACACTGCACCCATCCGCCGGCAAATATTTTACCCTAAAGACA CATGGAATCACATCCAAGGCAGACATATATCTGAACGGAGTGCTCGTTGCGTCAAGTGACGAGCAGCAAGGCTCC TATGGCGGCCATCAGTACGAACTGACCCATCATGTTAAGGAAGGAGCTAATTGTCTTCTCGTTTGTGCATTCCCA ACCAACTATCTTCGCGATTTTGCCCAGGGGTTTGTGGACTGGAATCCCTACCCAGCAGACAATGGAACCGGCGTT TGGCGAAATGTGGAGGTTTCTCAGACTGGAGCGGTTTCGATATCGTCGTTCCGCATCCTCACTAATTTTACTCAC CCCAATTCTGAGCCTGTGAAGGTCACCTTTCGGACTGATTTGAGCAATTTTGAATCTAGTGGTCAGCAAATAATG ATCAACGGCACCGTCGAAGGGCCAGATGGCTCGGTAGCTGTGCAAATTAGCGAGACATTTGACCTGAAGTCAAAA GAGAAAAAGGCGGTGTCTATGAGCGTGTCAATTGTGAACCCTGATATTTGGTGGGCTGCCCTTTGGGGTGAGCAG CCTCTATACACGATACATGCCAGCGCCATCATCCGAAAACCCCAGAAGTCAGTGTCAGACAGTTCAATTCGCCAA AAATTCGGGATTCGCCATGTATCATCGAGATTAAACAAGTCCAATGATACCGAGTTTGCTGTCAATGGCGAGCCC TTCCAGGTCATCGGAGCTGGTTATGGGCCGGATATCTTCTTGCGATTCGATATTCACAGGGAGCACCCAGAACTT TATGATCTCGCAGATAAGATGGGCTTGATGGTCCTGGCGGGATGGGAATGTTGTGACAAATGGGAAGGGTGGAAG TATAACGACGAGGCCGATGGTGTCAAATGGGGAAAGTCCGACTACCCAGTTGTGAAGGCAGCAATGCTGCATGAG GCAGAGATGATGCAGAGCCATGCTTCGATGCTTGGCTTTTTAGTGGGCTCAGACTTCTGGCCCAATATCCAAGCC ACCGAGATCTATTTAGACGCTCTCAAAGTCATGGATTGGCCTAATCCAATCATTGCATCAGCCAGCAAGCGTGGT TACCCCGAAGCTCTTGGGCCATCCGGAATGAAGATGGACGGCCCATACGATTGGGTACCCCCGAATTACTGGTAC AACAATGAAGAAGGAGCGGCATCTGGATTTGGATCTGAATTGGGTCCTGGAGTTGGTACCCCTGAGATTGGCAGC CTGAAAAAGTTCATGTCTGGTGCCGAGCTGGAAACACTTTGGAAAGAACCAGATGCAGACCAATATCATATGTCC CGTTATGATTCGCAATTTTACGACCGGAAGCTCTACAACAACGCTCTATTTGCTCGATACGGAGAGCCATCTAGC CTGGAGGACTACATCGTCAAATGTCAGATGACAGATTATGAGGCCACGCGATCCCAGTTTGAAGCTTACGGAACG CAACAAAATGCGACGCGACCTGCCACAGGGATTATTTATTGGATGTTAAATAGCGCCTGGCCGAATCTGCATTGG CAGTTGTTTGATTACTATCTCAGCCCTATGGCAGCCTACTTTGGCACCAAGGTTGGAGCGCAAAACAGCGGAAAT CGGCACATCAAGGTAGATCTCATTGATTCAAATGGCGAAGAACTCTCCGAGGCCACAGTGGAGAGCAACACAACG CCTCATTCCTCGAAGGTGGTGGCTTCGCTTAACGGAATTAAAACAGTCAAAGATATTGGCTTCCTCCGTCTCACA CTCAGTGATACCAAATATGAAGGTTTCCTTAGTCGCAATGTATACTGGCTCTCTCCTACCACGGATGTCTTGGAC TGGTCAAACTCTGATTGGTACACCACCCCAGTTACTAAGTTTGCCAAATACACTAAGCTAGAGACACTAAAACCG GCTACTTTGAATGGTTCATTACACAGCCTGGAGTCACCAACAGACGATGGTTTGACTCATGCTGAGGTCCTGCTC GAAAACCAATCTGCAGGGCCGGCAGTTTTCATTCGTCTGAATGCTATCAATGCACTCAAAAGTGTGGAAATTGCG CCGCTTTATTGGTCTGATAACTATGTGACTCTTTGGCCGAAAGAAAATCTGCGGTTAACTGTTGCATTTGAAGGA GATATTCAGCATACTGTGGTTGAAATTACAGGAAGGAATGTGGAGAAAGTGACTCTCAAGGTTTAA |
| Gene | >Pro_DTO377G3_2|g9548.t1 ATGCATAAAATTTGCATTTCACTTGCTTTCAGTGCATGTGCCTGCGCAGTGACTACCGGCTCCGAACCCCTTGTT GCCACTGCTGGTGATATTGCTGCTATCCCGGGATGGTACCTCCAATCATCGACCAAAGTATCAGAAGGGATGGAT GTACTATCCATGCCGGGAAAAGATGTCTCCTCATGGAATCGGGTTGGTTCTCGTGGCACAGTTATGGCTGGGCTT ATTGAGAACGAGGTATACAACGAGACAGAATTGTTCTACTCGGATAAGATGGAATCTATCGCTGATCCCTCCACG TTCGACGCACCCTGGCTTTATCGAGAAGAGTTCACACTGCACCCATCCGCCGGCAAATATTTTACCCTAAAGACA CATGGAATCACATCCAAGGCAGACATATATCTGAACGGAGTGCTCGTTGCGTCAAGTGACGAGCAGCAAGGCTCC TATGGCGGCCATCAGTACGAACTGACCCATCATGTTAAGGAAGGAGCTAATTGTCTTCTCGTTTGTGCATTCCCA ACCAACTATCTTCGCGATTTTGCCCAGGGGTTTGTGGACTGGAATCCCTACCCAGCAGACAATGGAACCGGCGTT TGGCGAAATGTGGAGGTTTCTCAGACTGGAGCGGTTTCGATATCGTCGTTCCGCATCCTCACTAATTTTACTCAC CCCAATTCTGAGCCTGTGAAGGTCACCTTTCGGACTGATTTGAGCAATTTTGAATCTAGTGGTCAGCAAATAATG ATCAACGGCACCGTCGAAGGGCCAGATGGCTCGGTAGCTGTGCAAATTAGCGAGACATTTGACCTGAAGTCAAAA GAGAAAAAGGCGGTGTCTATGAGCGTGTCAATTGTGAACCCTGATATTTGGTGGGCTGCCCTTTGGGGTGAGCAG CCTCTATACACGATACATGCCAGCGCCATCATCCGAAAACCCCAGAAGTCAGTGTCAGACAGTTCAATTCGCCAA AAATTCGGGATTCGCCATGTATCATCGAGATTAAACAAGTCCAATGATACCGAGTTTGCTGTCAATGGCGAGCCC TTCCAGGTCATCGGAGCTGGTTATGGGCCGGATATCTTCTTGCGATTCGATATTCACAGGGTGCAGAATATTTTC GCCTAAATGTTAGATATGGGACTCAATACTGTGCGCTTGGAGGGAAAACAGGAGCACCCAGAACTTTATGATCTC GCAGATAAGATGGGCTTGATGGTCCTGGCGGGATGGGAATGTTGTGACAAATGGGAAGGGTGGAAGGTAAGTCTT CTCATACTCTTGCCGCGACGTTAGAACACTGACAAAGACAGTATAACGACGAGGCCGATGGTGTCAAATGGGGAA AGTCCGACTACCCAGTTGTGAAGGCAGCAATGCTGCATGAGGCAGAGATGATGCAGAGCCATGCTTCGATGCTTG GCTTTTTAGTGGGCTCAGACTTCTGGCCCAATATCCAAGCCACCGAGATCTATTTAGACGCTCTCAAAGTCATGG ATTGGCCTAATCCAATCATTGCATCAGCCAGCAAGCGTGGTTACCCCGAAGCTCTTGGGCCATCCGGAATGAAGA TGGACGGCCCATACGATTGGGTACCCCCGAATTACTGGTACAACAATGAAGAAGGAGCGGCATCTGGATTTGGAT CTGAATTGGGTCCTGGAGTTGGTACCCCTGAGATTGGCAGCCTGAAAAAGTTCATGTCTGGTGCCGAGCTGGAAA CACTTTGGAAAGAACCAGATGCAGACCAATATCATATGTCCCGTTATGATTCGCAATTTTACGACCGGAAGCTCT ACAACAACGCTCTATTTGCTCGATACGGAGAGCCATCTAGCCTGGAGGACTACATCGTCAAATGTCAGATGACAG ATTATGAGGCCACGCGATCCCAGTTTGAAGCTTACGGAACGCAACAAAATGCGACGCGACCTGCCACAGGGATTA TTTATTGGATGTTAAATAGCGCCTGGCCGAATCTGCATTGGCAGTTGTTTGATTACTATCTCAGCCCTATGGCAG CCTACTTTGGCACCAAGGTTGGAGCGCGTATGGAACACGTGGCTTATGATTATGAGAGCCAGAAATATTTGGTTG ATTAACCACTCGCTAGAAAACAGCGGAAATCGGCACATCAAGGTAGATCTCATTGATTCAAATGGCGAAGAACTC TCCGAGGCCACAGTGGAGAGCAACACAACGCCTCATTCCTCGAAGGTGGTGGCTTCGCTTAACGGAATTAAAACA GTCAAAGATATTGGCTTCCTCCGTCTCACACTCAGTGATACCAAATATGAAGGTTTCCTTAGTCGCAATGTATAC TGGCTCTCTCCTACCACGGATGTCTTGGACTGGTCAAACTCTGATTGGTACACCACCCCAGTTACTAAGTTTGCC AAATACACTAAGCTAGAGACACTAAAACCGGCTACTTTGAATGGTTCATTACACAGCCTGGAGTCACCAACAGAC GATGGTTTGACTCATGCTGAGGTCCTGCTCGAAAACCAATCTGCAGGGCCGGCAGTTTTCATTCGTCTGAATGCT ATCAATGCACTCAAAAGTGTGGAAATTGCGCCGCTTTATTGGTCTGATAACTATGTGACTCTTTGGCCGAAAGAA AATCTGCGGTTAACTGTTGCATTTGAAGGAGATATTCAGCATACTGTGGTTGAAATTACAGGAAGGAATGTGGAG AAAGTGACTCTCAAGGTTTAA |