© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g9538.t1 |
| Gene name | |
| Location | scaffold_50:56276..57570 |
| Strand | - |
| Gene length (bp) | 1294 |
| Transcript length (bp) | 1104 |
| Coding sequence length (bp) | 1104 |
| Protein length (aa) | 368 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF03443 | AA9 | Auxiliary Activity family 9 (formerly GH61) | 6.2E-65 | 17 | 234 |
| PF00734 | CBM_1 | Fungal cellulose binding domain | 3.7E-12 | 331 | 359 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0030248 | cellulose binding | Yes |
| GO:0005975 | carbohydrate metabolic process | Yes |
| GO:0005576 | extracellular region | Yes |
| GO:0008150 | biological_process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0005488 | binding | No |
| GO:0008152 | metabolic process | No |
| GO:0030247 | polysaccharide binding | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0030246 | carbohydrate binding | No |
| GO:0003674 | molecular_function | No |
| GO:0005575 | cellular_component | No |
| GO:0071704 | organic substance metabolic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 17 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 0.57 | 0.0 | 1.35 |
| 5d_25C | Five days - 25 degrees Celsius | 0.13 | 0.0 | 0.41 |
| 7d_25C | Seven days - 25 degrees Celsius | 0.03 | 0.0 | 0.16 |
| 10d_25C | Ten days - 25 degrees Celsius | 0.06 | 0.0 | 0.25 |
| 7d_15C | Seven days - 15 degrees Celsius | 0.22 | 0.0 | 0.59 |
| 7d_30C | Seven days - 30 degrees Celsius | 0.69 | 0.0 | 1.49 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 1.0 | no |
| 3d_25C | 7d_25C | 1.0 | no |
| 3d_25C | 7d_15C | 1.0 | no |
| 3d_25C | 7d_30C | 1.0 | no |
| 3d_25C | 10d_25C | 1.0 | no |
| 5d_25C | 7d_25C | 1.0 | no |
| 5d_25C | 7d_15C | 1.0 | no |
| 5d_25C | 7d_30C | 1.0 | no |
| 5d_25C | 10d_25C | 1.0 | no |
| 7d_25C | 7d_15C | 1.0 | no |
| 7d_25C | 7d_30C | 1.0 | no |
| 7d_25C | 10d_25C | 1.0 | no |
| 7d_15C | 7d_30C | 1.0 | no |
| 7d_15C | 10d_25C | 1.0 | no |
| 7d_30C | 10d_25C | 1.0 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g9538.t1 MYSLLGSALFVSLVAGHGHVTNIVINGVSFDGWDINSYPYTDSPPVVVAWGTPNTANGFIAPDAYTTSDIICHLN ATNAKGHAVVAAGDRVFIQWTADWPESHHGPIVDYLASCGTSGCETVDKTTLEFFKIDAVGLIDDTTVPGTWADD QLIAQNSGWMVEIPPNIAPGSYVLRHELIALHSAGTEGGAQNYPQCFNLQITGSGSDQPAGILATDLYNPTDPGI LVNIYTSLSTYTIPGPTLYSGAVSITQTTSAITASGTPVTGTGVTTGGTTTTSTSTSKATTTTLVTTTTSTTSAT TTNTTSAITTTTTSATTSTSSAGGDGASQTLYGQCGGTGWTGATACASSAACSSMNPWYYQCLPTAA* |
| Coding | >Pro_DTO377G3_2|g9538.t1 ATGTATAGCCTTCTCGGCTCCGCTCTGTTTGTGTCTCTCGTTGCGGGCCATGGTCACGTAACCAACATCGTTATT AACGGTGTCTCCTTCGATGGATGGGACATAAACAGTTATCCTTATACAGACTCGCCTCCAGTTGTGGTGGCTTGG GGTACCCCAAACACTGCCAATGGTTTCATCGCTCCGGATGCCTACACGACCTCTGATATTATCTGCCATCTTAAC GCTACGAATGCTAAAGGTCACGCGGTAGTAGCTGCCGGTGACCGAGTCTTTATTCAGTGGACTGCCGACTGGCCG GAATCGCATCATGGACCGATCGTTGATTATCTTGCTAGTTGCGGCACGAGTGGCTGTGAAACTGTGGATAAAACC ACGCTCGAGTTCTTCAAGATCGACGCCGTCGGACTAATTGATGACACAACCGTTCCCGGTACTTGGGCTGATGAT CAGCTCATAGCCCAGAACTCGGGATGGATGGTCGAGATTCCTCCCAACATCGCACCTGGGAGTTATGTTTTGAGA CACGAATTGATCGCACTCCATAGCGCAGGCACTGAGGGTGGTGCCCAAAATTATCCCCAATGCTTCAACCTTCAA ATCACTGGCTCGGGGTCAGATCAGCCAGCAGGTATCTTAGCTACTGATCTGTACAATCCAACGGATCCTGGAATC CTCGTGAACATTTACACGTCTCTGTCAACCTATACTATCCCAGGACCAACTCTTTACAGTGGTGCCGTCTCAATC ACACAAACCACCTCTGCAATCACCGCCTCAGGTACACCTGTGACAGGGACGGGTGTTACGACCGGCGGAACCACT ACAACCTCAACCTCAACCTCCAAGGCCACCACCACAACGCTAGTGACTACCACGACGAGCACTACGAGTGCTACC ACGACGAACACTACGAGCGCTATCACGACGACCACTACCAGTGCTACCACTAGTACTTCTTCTGCTGGCGGGGAC GGAGCGTCCCAGACTCTCTACGGTCAGTGTGGAGGAACCGGTTGGACAGGAGCAACCGCATGTGCATCGTCTGCA GCCTGTTCTTCGATGAACCCGTGGTATTATCAGTGTCTTCCGACTGCTGCTTGA |
| Transcript | >Pro_DTO377G3_2|g9538.t1 ATGTATAGCCTTCTCGGCTCCGCTCTGTTTGTGTCTCTCGTTGCGGGCCATGGTCACGTAACCAACATCGTTATT AACGGTGTCTCCTTCGATGGATGGGACATAAACAGTTATCCTTATACAGACTCGCCTCCAGTTGTGGTGGCTTGG GGTACCCCAAACACTGCCAATGGTTTCATCGCTCCGGATGCCTACACGACCTCTGATATTATCTGCCATCTTAAC GCTACGAATGCTAAAGGTCACGCGGTAGTAGCTGCCGGTGACCGAGTCTTTATTCAGTGGACTGCCGACTGGCCG GAATCGCATCATGGACCGATCGTTGATTATCTTGCTAGTTGCGGCACGAGTGGCTGTGAAACTGTGGATAAAACC ACGCTCGAGTTCTTCAAGATCGACGCCGTCGGACTAATTGATGACACAACCGTTCCCGGTACTTGGGCTGATGAT CAGCTCATAGCCCAGAACTCGGGATGGATGGTCGAGATTCCTCCCAACATCGCACCTGGGAGTTATGTTTTGAGA CACGAATTGATCGCACTCCATAGCGCAGGCACTGAGGGTGGTGCCCAAAATTATCCCCAATGCTTCAACCTTCAA ATCACTGGCTCGGGGTCAGATCAGCCAGCAGGTATCTTAGCTACTGATCTGTACAATCCAACGGATCCTGGAATC CTCGTGAACATTTACACGTCTCTGTCAACCTATACTATCCCAGGACCAACTCTTTACAGTGGTGCCGTCTCAATC ACACAAACCACCTCTGCAATCACCGCCTCAGGTACACCTGTGACAGGGACGGGTGTTACGACCGGCGGAACCACT ACAACCTCAACCTCAACCTCCAAGGCCACCACCACAACGCTAGTGACTACCACGACGAGCACTACGAGTGCTACC ACGACGAACACTACGAGCGCTATCACGACGACCACTACCAGTGCTACCACTAGTACTTCTTCTGCTGGCGGGGAC GGAGCGTCCCAGACTCTCTACGGTCAGTGTGGAGGAACCGGTTGGACAGGAGCAACCGCATGTGCATCGTCTGCA GCCTGTTCTTCGATGAACCCGTGGTATTATCAGTGTCTTCCGACTGCTGCTTGA |
| Gene | >Pro_DTO377G3_2|g9538.t1 ATGTATAGCCTTCTCGGCTCCGCTCTGTTTGTGTCTCTCGTTGCGGGCCATGGTCACGTAACCAACATCGTTATT AACGGTGTCTCCTTCGATGGATGGGACATAAACAGTTATCCTTATACAGACTCGCCTCCAGTTGTGGTGGCTTGG GGTACCCCAAACACTGCCAATGGTTTCATCGCTCCGGGTATGGTATTCTATTATTGTCCTCTCTGACCAAGACCA ATTTCCTTTCTAACTCTGCAAATCTAGATGCCTACACGACCTCTGATATTATCTGCCATCTTAACGCTACGAATG CTAAAGGTCACGCGGTAGTAGCTGCCGGTGACCGAGTCTTTATTCAGTGGACTGCCGACTGGCCGGAATCGCATC ATGGACCGATCGTTGATTATCTTGCTAGTTGCGGCACGAGTGGCTGTGAAACTGTGGATAAAACCACGCTCGAGT TCTTCAAGATCGACGCCGTCGGACTAATTGATGACACAACCGTTCCCGGTACTTGGGCTGATGATCAGCTCATAG CCCAGAACTCGGGATGGATGGTCGAGATTCCTCCCAACATCGCACCTGGGAGTTATGTTTTGAGACACGAATTGT ACGTAAATCCCACTCATTTATCGAAAAAGTTGCGCTAACTAACCTTGCTGTGAAGGATCGCACTCCATAGCGCAG GCACTGAGGGTGGTGCCCAAAATTATCCCCAATGCTTCAACCTTCAAATCACTGGCTCGGGGTCAGATCAGCCAG CAGGTATCTTAGCTACTGATCTGTACAATCCAACGGATCCTGGAATCCTCGTGAACATTTACACGTCTCTGTCAA CCTATGTGAGTGATTAATTGGCATGATGGTTTGCTGAGATTTCGCACTCCCTTGCTAATATCACTTTATTCAGAC TATCCCAGGACCAACTCTTTACAGTGGTGCCGTCTCAATCACACAAACCACCTCTGCAATCACCGCCTCAGGTAC ACCTGTGACAGGGACGGGTGTTACGACCGGCGGAACCACTACAACCTCAACCTCAACCTCCAAGGCCACCACCAC AACGCTAGTGACTACCACGACGAGCACTACGAGTGCTACCACGACGAACACTACGAGCGCTATCACGACGACCAC TACCAGTGCTACCACTAGTACTTCTTCTGCTGGCGGGGACGGAGCGTCCCAGACTCTCTACGGTCAGTGTGGAGG AACCGGTTGGACAGGAGCAACCGCATGTGCATCGTCTGCAGCCTGTTCTTCGATGAACCCGTGGTATTATCAGTG TCTTCCGACTGCTGCTTGA |