© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g9523.t1 |
| Gene name | |
| Location | scaffold_50:19737..21830 |
| Strand | + |
| Gene length (bp) | 2093 |
| Transcript length (bp) | 1860 |
| Coding sequence length (bp) | 1860 |
| Protein length (aa) | 620 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00232 | Glyco_hydro_1 | Glycosyl hydrolase family 1 | 6.8E-71 | 161 | 613 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds | Yes |
| GO:0005975 | carbohydrate metabolic process | Yes |
| GO:0016798 | hydrolase activity, acting on glycosyl bonds | No |
| GO:0008150 | biological_process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0008152 | metabolic process | No |
| GO:0003674 | molecular_function | No |
| GO:0003824 | catalytic activity | No |
| GO:0016787 | hydrolase activity | No |
| GO:0071704 | organic substance metabolic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 18 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 2.09 | 0.50 | 3.67 |
| 5d_25C | Five days - 25 degrees Celsius | 1.75 | 0.36 | 3.14 |
| 7d_25C | Seven days - 25 degrees Celsius | 1.11 | 0.15 | 2.08 |
| 10d_25C | Ten days - 25 degrees Celsius | 1.37 | 0.23 | 2.51 |
| 7d_15C | Seven days - 15 degrees Celsius | 2.76 | 0.77 | 4.76 |
| 7d_30C | Seven days - 30 degrees Celsius | 3.96 | 1.24 | 6.68 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.757578 | no |
| 3d_25C | 7d_25C | 0.184958 | no |
| 3d_25C | 7d_15C | 0.569403 | no |
| 3d_25C | 7d_30C | 0.102709 | no |
| 3d_25C | 10d_25C | 0.367957 | no |
| 5d_25C | 7d_25C | 0.396238 | no |
| 5d_25C | 7d_15C | 0.328713 | no |
| 5d_25C | 7d_30C | 0.038966 | yes |
| 5d_25C | 10d_25C | 0.667404 | no |
| 7d_25C | 7d_15C | 0.047134 | yes |
| 7d_25C | 7d_30C | 0.004450 | yes |
| 7d_25C | 10d_25C | 0.738815 | no |
| 7d_15C | 7d_30C | 0.420514 | no |
| 7d_15C | 10d_25C | 0.094431 | no |
| 7d_30C | 10d_25C | 0.007091 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g9523.t1 MRLPFISLAALAVAIQAQEVYLTTTGYSARPQCTQSNVAPKYQFQPFSYTLNETVRYATSVPSPTTTRTYGPRYT DAVKHFTTSWSTSTWGSWVPGQTVISATDTKDPYGQAAWSSMWLQADLHNYTTTGLFSTTVSPTPVPSSELVLPP RDYFGPTDCYNFPKDFVFGVAGSAAQIEGAIGLDGRSPSLLEKLVPDSKPKDYVTNENYFLYKQDIQRLAAMGVE YYSFTIPWTRVLPFALPGTPVNQQAIDHYNDLIDTVLDAGMTPAVTMLHFDSPLMFVASDNITRHPDIGYNNAGY QNETFVDAFVNYGKVLLSHYADRVPIWVTFNEPLLYAFNFKGADHVVKAHSQIYHFYHDTLKATGKIGIKFNDNF GVPKDPKNSSHVLAADRFQEMQLGIFANPIFLGKQYPKSVLETLPGAKPLSKSELKYIGHTSDFFGIDPYTATVV SPAEEGIKACAANPSISNDLFPYCVKQETKNVYGWNIGYRSESYVYITPTYLREYLYYLWNTFRHPILVSEFGFP VHAEAELELSDQLFDSPRSVYYLSYMSEILKSIYEDGVHVMGALAWSFVDNWEFGDYTQQFGIQSVNRTTQQRHY KKSFFDLVDFVKTRQPNKD* |
| Coding | >Pro_DTO377G3_2|g9523.t1 ATGCGATTGCCGTTCATTTCCCTTGCTGCTTTGGCTGTGGCTATACAGGCACAGGAAGTATACTTGACAACAACA GGTTATTCTGCTCGGCCACAATGTACACAATCGAACGTGGCACCGAAATACCAATTTCAGCCCTTCTCCTATACT TTGAACGAAACAGTTCGATACGCAACCTCTGTTCCTTCCCCGACGACCACACGGACATATGGCCCACGTTATACA GACGCAGTCAAACATTTTACCACTAGCTGGTCGACCTCAACGTGGGGCAGCTGGGTTCCGGGGCAAACTGTTATC AGCGCCACTGACACAAAGGACCCATATGGACAAGCTGCGTGGTCTTCGATGTGGCTACAGGCAGATCTTCACAAC TATACCACCACTGGGTTATTCTCGACAACTGTCAGTCCCACACCCGTGCCCAGCAGTGAGCTGGTCTTGCCACCG CGCGACTATTTTGGTCCTACCGACTGCTATAATTTCCCCAAGGACTTTGTGTTTGGGGTTGCAGGGAGTGCGGCG CAGATTGAAGGTGCAATTGGGTTGGATGGTCGATCACCTTCGTTGTTGGAGAAATTGGTACCCGACAGCAAGCCA AAGGACTATGTCACCAACGAAAATTATTTCTTGTATAAGCAAGACATACAGCGACTAGCTGCAATGGGTGTCGAG TATTATAGCTTTACAATCCCCTGGACGCGGGTTTTGCCTTTTGCTCTTCCAGGAACACCTGTCAATCAACAAGCC ATTGATCATTATAATGACTTGATCGACACAGTTCTCGATGCAGGAATGACGCCAGCTGTCACAATGCTTCATTTC GACAGCCCATTAATGTTTGTCGCCAGCGACAATATCACGCGACACCCAGATATTGGCTACAACAATGCCGGCTAC CAAAACGAAACTTTTGTCGACGCATTTGTCAACTATGGAAAGGTTCTGCTTTCTCATTATGCAGACCGAGTCCCA ATCTGGGTGACCTTCAATGAGCCCCTGCTCTACGCATTCAATTTCAAAGGAGCAGACCACGTTGTCAAGGCACAT TCCCAGATCTACCACTTCTATCATGATACCTTGAAGGCCACGGGGAAGATTGGCATAAAGTTCAACGACAACTTT GGAGTGCCTAAGGATCCGAAAAACTCTAGCCATGTCCTCGCGGCTGACCGCTTCCAAGAAATGCAACTGGGTATC TTCGCAAATCCAATATTCTTGGGTAAGCAGTACCCAAAGTCTGTATTAGAAACACTCCCCGGAGCCAAACCCTTG AGCAAATCCGAACTGAAATACATCGGCCACACATCCGACTTTTTTGGTATTGATCCGTATACCGCTACGGTAGTA TCTCCGGCCGAGGAAGGCATCAAGGCTTGCGCTGCCAACCCGTCAATCTCGAATGATCTTTTCCCATATTGCGTC AAGCAAGAAACAAAGAATGTTTACGGATGGAACATTGGGTATCGCTCCGAGTCCTACGTGTATATCACACCGACG TATCTCCGAGAGTATCTCTATTACCTGTGGAATACTTTCCGACACCCAATTCTGGTATCAGAGTTTGGGTTTCCG GTACATGCAGAAGCAGAACTGGAGCTCTCTGACCAGCTATTTGACTCTCCTAGGAGCGTGTACTATCTTTCCTAC ATGTCTGAAATTCTCAAGTCAATATATGAAGACGGTGTGCATGTCATGGGAGCCCTTGCTTGGAGCTTCGTCGAC AATTGGGAATTTGGGGACTACACGCAACAATTTGGCATTCAAAGTGTCAATCGCACCACCCAGCAGCGGCACTAC AAAAAGAGCTTCTTTGACCTGGTTGATTTTGTGAAAACTCGACAGCCGAACAAAGACTAA |
| Transcript | >Pro_DTO377G3_2|g9523.t1 ATGCGATTGCCGTTCATTTCCCTTGCTGCTTTGGCTGTGGCTATACAGGCACAGGAAGTATACTTGACAACAACA GGTTATTCTGCTCGGCCACAATGTACACAATCGAACGTGGCACCGAAATACCAATTTCAGCCCTTCTCCTATACT TTGAACGAAACAGTTCGATACGCAACCTCTGTTCCTTCCCCGACGACCACACGGACATATGGCCCACGTTATACA GACGCAGTCAAACATTTTACCACTAGCTGGTCGACCTCAACGTGGGGCAGCTGGGTTCCGGGGCAAACTGTTATC AGCGCCACTGACACAAAGGACCCATATGGACAAGCTGCGTGGTCTTCGATGTGGCTACAGGCAGATCTTCACAAC TATACCACCACTGGGTTATTCTCGACAACTGTCAGTCCCACACCCGTGCCCAGCAGTGAGCTGGTCTTGCCACCG CGCGACTATTTTGGTCCTACCGACTGCTATAATTTCCCCAAGGACTTTGTGTTTGGGGTTGCAGGGAGTGCGGCG CAGATTGAAGGTGCAATTGGGTTGGATGGTCGATCACCTTCGTTGTTGGAGAAATTGGTACCCGACAGCAAGCCA AAGGACTATGTCACCAACGAAAATTATTTCTTGTATAAGCAAGACATACAGCGACTAGCTGCAATGGGTGTCGAG TATTATAGCTTTACAATCCCCTGGACGCGGGTTTTGCCTTTTGCTCTTCCAGGAACACCTGTCAATCAACAAGCC ATTGATCATTATAATGACTTGATCGACACAGTTCTCGATGCAGGAATGACGCCAGCTGTCACAATGCTTCATTTC GACAGCCCATTAATGTTTGTCGCCAGCGACAATATCACGCGACACCCAGATATTGGCTACAACAATGCCGGCTAC CAAAACGAAACTTTTGTCGACGCATTTGTCAACTATGGAAAGGTTCTGCTTTCTCATTATGCAGACCGAGTCCCA ATCTGGGTGACCTTCAATGAGCCCCTGCTCTACGCATTCAATTTCAAAGGAGCAGACCACGTTGTCAAGGCACAT TCCCAGATCTACCACTTCTATCATGATACCTTGAAGGCCACGGGGAAGATTGGCATAAAGTTCAACGACAACTTT GGAGTGCCTAAGGATCCGAAAAACTCTAGCCATGTCCTCGCGGCTGACCGCTTCCAAGAAATGCAACTGGGTATC TTCGCAAATCCAATATTCTTGGGTAAGCAGTACCCAAAGTCTGTATTAGAAACACTCCCCGGAGCCAAACCCTTG AGCAAATCCGAACTGAAATACATCGGCCACACATCCGACTTTTTTGGTATTGATCCGTATACCGCTACGGTAGTA TCTCCGGCCGAGGAAGGCATCAAGGCTTGCGCTGCCAACCCGTCAATCTCGAATGATCTTTTCCCATATTGCGTC AAGCAAGAAACAAAGAATGTTTACGGATGGAACATTGGGTATCGCTCCGAGTCCTACGTGTATATCACACCGACG TATCTCCGAGAGTATCTCTATTACCTGTGGAATACTTTCCGACACCCAATTCTGGTATCAGAGTTTGGGTTTCCG GTACATGCAGAAGCAGAACTGGAGCTCTCTGACCAGCTATTTGACTCTCCTAGGAGCGTGTACTATCTTTCCTAC ATGTCTGAAATTCTCAAGTCAATATATGAAGACGGTGTGCATGTCATGGGAGCCCTTGCTTGGAGCTTCGTCGAC AATTGGGAATTTGGGGACTACACGCAACAATTTGGCATTCAAAGTGTCAATCGCACCACCCAGCAGCGGCACTAC AAAAAGAGCTTCTTTGACCTGGTTGATTTTGTGAAAACTCGACAGCCGAACAAAGACTAA |
| Gene | >Pro_DTO377G3_2|g9523.t1 ATGCGATTGCCGTTCATTTCCCTTGCTGCTTTGGCTGTGGCTATACAGGCACAGGAAGTATACTTGACAACAACA GGTTATTCTGCTCGGCCACAATGTACACAATCGAACGTGGCACCGAAATACCAATTTCAGCCCTTCTCCTATACT TTGAACGAAACAGTTCGGTAAGAAATTTATAGAACTAGTGTACACCATCGCTTGCTAATTGAAGTATGAGATACG CAACCTCTGTTCCTTCCCCGACGACCACACGGACATATGGCCCACGTTATACAGACGCAGTCAAACATTTTACCA CTAGCTGGTCGACCTCAACGTGGGGCAGCTGGGTTCCGGGGCAAACTGTTATCAGCGCCACTGACACAAAGGACC CATATGGACAAGCTGCGTGGTCTTCGATGTGGCTACAGGCAGATCTTCACAACTATGTATGTCGTGTGCTCTGTG ATTCCTCGCAAATTGCAGTTGTAGCTTACTTGAGTAGACCACCACTGGGTTATTCTCGACAACTGTCAGTCCCAC ACCCGTGCCCAGCAGTGAGCTGGTCTTGCCACCGCGCGACTATTTTGGTCCTACCGACTGCTATAATTTCCCCAA GGACTTTGTGTTTGGGGTTGCAGGGAGTGCGGCGCAGATTGAAGGTGCAATTGGGTTGGATGGTCGATCACCTTC GTTGTTGGAGAAATTGGTACCCGACAGCAAGCCAAAGGACTATGTCACCAACGAAAATTATTTCTTGTATAAGCA AGACATACAGCGACTAGCTGCAATGGGTGTCGAGTATTATAGCTTTACAATCCCCTGGACGCGGGTTTTGCCTTT TGCTCTTCCAGGAACACCTGTCAATCAACAAGCCATTGATCATTATAATGACTTGATCGACACAGTTCTCGATGC AGGAATGACGGTAAATATCCCAAATATCTCAATTCATACCTGTTAAATGCCAGTATTCTAATAAATTTGCAGCCA GCTGTCACAATGCTTCATTTCGACAGCCCATTAATGTTTGTCGCCAGCGACAATATCACGCGACACCCAGATATT GGCTACAACAATGCCGGCTACCAAAACGAAACTTTTGTCGACGCATTTGTCAACTATGGAAAGGTACGGATTCTA TTCCACAAGTCATCAATTCCCATCCAAGTCTGACGTGGATCACTCCCTAGGTTCTGCTTTCTCATTATGCAGACC GAGTCCCAATCTGGGTGACCTTCAATGAGCCCCTGCTCTACGCATTCAATTTCAAAGGAGCAGACCACGTTGTCA AGGCACATTCCCAGATCTACCACTTCTATCATGATACCTTGAAGGCCACGGGGAAGATTGGCATAAAGTTCAACG ACAACTTTGGAGTGCCTAAGGATCCGAAAAACTCTAGCCATGTCCTCGCGGCTGACCGCTTCCAAGAAATGCAAC TGGGTATCTTCGCAAATCCAATATTCTTGGGTAAGCAGTACCCAAAGTCTGTATTAGAAACACTCCCCGGAGCCA AACCCTTGAGCAAATCCGAACTGAAATACATCGGCCACACATCCGACTTTTTTGGTATTGATCCGTATACCGCTA CGGTAGTATCTCCGGCCGAGGAAGGCATCAAGGCTTGCGCTGCCAACCCGTCAATCTCGAATGATCTTTTCCCAT ATTGCGTCAAGCAAGAAACAAAGAATGTTTACGGATGGAACATTGGGTATCGCTCCGAGTCCTACGTGTATATCA CACCGACGTATCTCCGAGAGTATCTCTATTACCTGTGGAATACTTTCCGACACCCAATTCTGGTATCAGAGTTTG GGTTTCCGGTACATGCAGAAGCAGAACTGGAGCTCTCTGACCAGCTATTTGACTCTCCTAGGAGCGTGTACTATC TTTCCTACATGTCTGAAATTCTCAAGTCAATATATGAAGACGGTGTGCATGTCATGGGAGCCCTTGCTTGGAGCT TCGTCGACAATTGGGAATTTGGGGACTACACGCAACAATTTGGCATTCAAAGTGTCAATCGCACCACCCAGCAGC GGCACTACAAAAAGAGCTTCTTTGACCTGGTTGATTTTGTGAAAACTCGACAGCCGAACAAAGACTAA |