© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g9514.t1 |
| Gene name | |
| Location | scaffold_49:82179..83229 |
| Strand | + |
| Gene length (bp) | 1050 |
| Transcript length (bp) | 996 |
| Coding sequence length (bp) | 996 |
| Protein length (aa) | 332 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF04616 | Glyco_hydro_43 | Glycosyl hydrolases family 43 | 8.9E-35 | 40 | 296 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds | Yes |
| GO:0005975 | carbohydrate metabolic process | Yes |
| GO:0016798 | hydrolase activity, acting on glycosyl bonds | No |
| GO:0008150 | biological_process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0008152 | metabolic process | No |
| GO:0003674 | molecular_function | No |
| GO:0003824 | catalytic activity | No |
| GO:0016787 | hydrolase activity | No |
| GO:0071704 | organic substance metabolic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 25 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 99.80 | 59.94 | 139.65 |
| 5d_25C | Five days - 25 degrees Celsius | 48.62 | 25.61 | 71.62 |
| 7d_25C | Seven days - 25 degrees Celsius | 39.53 | 19.65 | 59.42 |
| 10d_25C | Ten days - 25 degrees Celsius | 19.03 | 7.65 | 30.42 |
| 7d_15C | Seven days - 15 degrees Celsius | 49.34 | 22.37 | 76.32 |
| 7d_30C | Seven days - 30 degrees Celsius | 128.85 | 68.50 | 189.19 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.000700 | yes |
| 3d_25C | 7d_25C | 0.000700 | yes |
| 3d_25C | 7d_15C | 0.009124 | yes |
| 3d_25C | 7d_30C | 0.336719 | no |
| 3d_25C | 10d_25C | 0.000700 | yes |
| 5d_25C | 7d_25C | 0.521557 | no |
| 5d_25C | 7d_15C | 0.973670 | no |
| 5d_25C | 7d_30C | 0.000700 | yes |
| 5d_25C | 10d_25C | 0.001278 | yes |
| 7d_25C | 7d_15C | 0.527409 | no |
| 7d_25C | 7d_30C | 0.000700 | yes |
| 7d_25C | 10d_25C | 0.013810 | yes |
| 7d_15C | 7d_30C | 0.000700 | yes |
| 7d_15C | 10d_25C | 0.001278 | yes |
| 7d_30C | 10d_25C | 0.000700 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g9514.t1 MRSFMKSTSTWGLLTLSLLPAVLSSPLFEKRIKGPWLGLNTNFPDPSFMKAADNKWYAFGTNGNGKRVQVAVSND FQTWTLLDVEALPTISTWETESDHWAPDVVMRDDGKYVMYYSGEAKSDLRHHCVGTAVADHPEGPYVPSNTPLSC RLDQGGSIDPAGFKDKDGSRYVVFKVDGNSIGHGGNCNNGVEPLVSTPILLQKVGADGVTPIGDAVQILDRSTAD GDGPLVEAPNLILHGNTYFLFYSTHCFTDPAYDVRYATAQSITGPYTKTNVPMINAANTGLISPGGGNVCGCGDR MLFHGFCTEEKTSRCMYVADVTIDGKTASIA* |
| Coding | >Pro_DTO377G3_2|g9514.t1 ATGCGGTCTTTCATGAAATCCACTTCCACATGGGGTCTACTAACCCTATCCCTTCTTCCGGCTGTCCTGAGCTCG CCTCTATTCGAAAAGCGAATCAAGGGCCCCTGGCTGGGCCTGAACACCAACTTCCCGGATCCCAGCTTCATGAAG GCGGCCGACAACAAATGGTATGCATTCGGCACCAACGGTAACGGCAAGCGGGTCCAAGTTGCCGTTTCAAATGAC TTCCAAACATGGACACTCCTCGATGTCGAAGCCCTCCCCACAATATCAACATGGGAAACTGAGAGCGATCACTGG GCACCTGACGTAGTGATGCGAGACGACGGAAAGTACGTTATGTATTACTCCGGTGAAGCAAAATCAGATCTCAGA CACCACTGCGTCGGCACAGCCGTAGCAGACCACCCAGAAGGACCCTACGTCCCAAGCAACACGCCCCTATCCTGC CGCCTGGATCAGGGTGGCTCAATCGACCCAGCAGGGTTCAAAGACAAAGACGGCAGTCGCTACGTCGTTTTCAAA GTCGACGGCAACAGCATCGGCCACGGCGGAAACTGCAACAACGGCGTCGAACCGCTTGTTTCCACGCCGATCCTG CTGCAGAAGGTTGGCGCCGACGGTGTCACGCCTATCGGGGACGCGGTGCAGATCCTCGATCGCAGTACTGCTGAT GGTGATGGCCCGCTGGTCGAGGCACCGAATCTGATTCTCCATGGGAATACGTACTTTTTGTTTTATTCCACTCAT TGCTTTACCGACCCGGCGTATGATGTGCGCTATGCTACGGCGCAGAGCATTACGGGTCCTTATACTAAGACCAAT GTTCCGATGATTAATGCTGCGAATACGGGGCTTATTTCGCCTGGTGGGGGGAATGTTTGTGGGTGCGGGGATCGG ATGTTGTTCCATGGGTTCTGTACTGAGGAGAAGACGAGTAGGTGTATGTATGTCGCTGATGTGACTATTGATGGG AAGACGGCGTCGATTGCTTGA |
| Transcript | >Pro_DTO377G3_2|g9514.t1 ATGCGGTCTTTCATGAAATCCACTTCCACATGGGGTCTACTAACCCTATCCCTTCTTCCGGCTGTCCTGAGCTCG CCTCTATTCGAAAAGCGAATCAAGGGCCCCTGGCTGGGCCTGAACACCAACTTCCCGGATCCCAGCTTCATGAAG GCGGCCGACAACAAATGGTATGCATTCGGCACCAACGGTAACGGCAAGCGGGTCCAAGTTGCCGTTTCAAATGAC TTCCAAACATGGACACTCCTCGATGTCGAAGCCCTCCCCACAATATCAACATGGGAAACTGAGAGCGATCACTGG GCACCTGACGTAGTGATGCGAGACGACGGAAAGTACGTTATGTATTACTCCGGTGAAGCAAAATCAGATCTCAGA CACCACTGCGTCGGCACAGCCGTAGCAGACCACCCAGAAGGACCCTACGTCCCAAGCAACACGCCCCTATCCTGC CGCCTGGATCAGGGTGGCTCAATCGACCCAGCAGGGTTCAAAGACAAAGACGGCAGTCGCTACGTCGTTTTCAAA GTCGACGGCAACAGCATCGGCCACGGCGGAAACTGCAACAACGGCGTCGAACCGCTTGTTTCCACGCCGATCCTG CTGCAGAAGGTTGGCGCCGACGGTGTCACGCCTATCGGGGACGCGGTGCAGATCCTCGATCGCAGTACTGCTGAT GGTGATGGCCCGCTGGTCGAGGCACCGAATCTGATTCTCCATGGGAATACGTACTTTTTGTTTTATTCCACTCAT TGCTTTACCGACCCGGCGTATGATGTGCGCTATGCTACGGCGCAGAGCATTACGGGTCCTTATACTAAGACCAAT GTTCCGATGATTAATGCTGCGAATACGGGGCTTATTTCGCCTGGTGGGGGGAATGTTTGTGGGTGCGGGGATCGG ATGTTGTTCCATGGGTTCTGTACTGAGGAGAAGACGAGTAGGTGTATGTATGTCGCTGATGTGACTATTGATGGG AAGACGGCGTCGATTGCTTGA |
| Gene | >Pro_DTO377G3_2|g9514.t1 ATGCGGTCTTTCATGAAATCCACTTCCACATGGGGTCTACTAACCCTATCCCTTCTTCCGGCTGTCCTGAGCTCG CCTCTATTCGAAAAGCGAATCAAGGGCCCCTGGCTGGGCCTGAACACCAACTTCCCGGATCCCAGCTTCATGAAG GCGGCCGACAACAAATGGTATGCATTCGGCACCAACGGTAACGGCAAGCGGGTCCAAGTTGCCGTTTCAAATGAC TTCCAAACATGGACACTCCTCGATGTCGAAGCCCTCCCCACAATATCAACATGGGAAACTGAGAGCGATCACTGG GCACCTGACGTAGTGATGCGAGTAAGTTTTCTCGGCTTCTAAAAAGATTAACCCTAAAAATTAACTATCTCCAAG GACGACGGAAAGTACGTTATGTATTACTCCGGTGAAGCAAAATCAGATCTCAGACACCACTGCGTCGGCACAGCC GTAGCAGACCACCCAGAAGGACCCTACGTCCCAAGCAACACGCCCCTATCCTGCCGCCTGGATCAGGGTGGCTCA ATCGACCCAGCAGGGTTCAAAGACAAAGACGGCAGTCGCTACGTCGTTTTCAAAGTCGACGGCAACAGCATCGGC CACGGCGGAAACTGCAACAACGGCGTCGAACCGCTTGTTTCCACGCCGATCCTGCTGCAGAAGGTTGGCGCCGAC GGTGTCACGCCTATCGGGGACGCGGTGCAGATCCTCGATCGCAGTACTGCTGATGGTGATGGCCCGCTGGTCGAG GCACCGAATCTGATTCTCCATGGGAATACGTACTTTTTGTTTTATTCCACTCATTGCTTTACCGACCCGGCGTAT GATGTGCGCTATGCTACGGCGCAGAGCATTACGGGTCCTTATACTAAGACCAATGTTCCGATGATTAATGCTGCG AATACGGGGCTTATTTCGCCTGGTGGGGGGAATGTTTGTGGGTGCGGGGATCGGATGTTGTTCCATGGGTTCTGT ACTGAGGAGAAGACGAGTAGGTGTATGTATGTCGCTGATGTGACTATTGATGGGAAGACGGCGTCGATTGCTTGA |