© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g9488.t1 |
| Gene name | |
| Location | scaffold_49:11032..12774 |
| Strand | + |
| Gene length (bp) | 1742 |
| Transcript length (bp) | 1386 |
| Coding sequence length (bp) | 1386 |
| Protein length (aa) | 462 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00190 | Cupin_1 | Cupin | 6.6E-19 | 153 | 262 |
| PF00190 | Cupin_1 | Cupin | 7.9E-19 | 312 | 442 |
| PF07883 | Cupin_2 | Cupin domain | 3.3E-08 | 158 | 222 |
| PF07883 | Cupin_2 | Cupin domain | 8.6E-12 | 338 | 411 |
| PF02311 | AraC_binding | AraC-like ligand binding domain | 2.9E-05 | 167 | 221 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0006355 | regulation of transcription, DNA-templated | Yes |
| GO:0009889 | regulation of biosynthetic process | No |
| GO:0065007 | biological regulation | No |
| GO:0080090 | regulation of primary metabolic process | No |
| GO:0060255 | regulation of macromolecule metabolic process | No |
| GO:0010556 | regulation of macromolecule biosynthetic process | No |
| GO:0031323 | regulation of cellular metabolic process | No |
| GO:0010468 | regulation of gene expression | No |
| GO:0051171 | regulation of nitrogen compound metabolic process | No |
| GO:1903506 | regulation of nucleic acid-templated transcription | No |
| GO:0050794 | regulation of cellular process | No |
| GO:0019222 | regulation of metabolic process | No |
| GO:0050789 | regulation of biological process | No |
| GO:0019219 | regulation of nucleobase-containing compound metabolic process | No |
| GO:0051252 | regulation of RNA metabolic process | No |
| GO:2001141 | regulation of RNA biosynthetic process | No |
| GO:0031326 | regulation of cellular biosynthetic process | No |
| GO:0008150 | biological_process | No |
| SignalP signal predicted | Location | Score |
|---|---|---|
| Yes | 1 - 19 | 0.999791 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 3.05 | 0.76 | 5.35 |
| 5d_25C | Five days - 25 degrees Celsius | 5.59 | 1.79 | 9.39 |
| 7d_25C | Seven days - 25 degrees Celsius | 8.68 | 3.20 | 14.16 |
| 10d_25C | Ten days - 25 degrees Celsius | 6.17 | 2.14 | 10.21 |
| 7d_15C | Seven days - 15 degrees Celsius | 3.97 | 1.07 | 6.88 |
| 7d_30C | Seven days - 30 degrees Celsius | 3.30 | 0.85 | 5.74 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.130081 | no |
| 3d_25C | 7d_25C | 0.004045 | yes |
| 3d_25C | 7d_15C | 0.606329 | no |
| 3d_25C | 7d_30C | 0.899168 | no |
| 3d_25C | 10d_25C | 0.055667 | no |
| 5d_25C | 7d_25C | 0.268584 | no |
| 5d_25C | 7d_15C | 0.466411 | no |
| 5d_25C | 7d_30C | 0.205431 | no |
| 5d_25C | 10d_25C | 0.850908 | no |
| 7d_25C | 7d_15C | 0.042422 | yes |
| 7d_25C | 7d_30C | 0.008807 | yes |
| 7d_25C | 10d_25C | 0.394330 | no |
| 7d_15C | 7d_30C | 0.733803 | no |
| 7d_15C | 10d_25C | 0.286152 | no |
| 7d_30C | 10d_25C | 0.097443 | no |
| Orthofinder run ID | 2 |
| Orthogroup | 4421 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g9488.t1 MKFQLFVTLLPAVLPLVHGIPARRDTPNPGLRGSDSLVGHSSSNKGGSDSPPDIKYTLVPGQTEDPNIGPYLDFE KADNPQPIRGSAGADDPGPRNYYYDRINSDKLAPPGTDHGQTINAQWPMGLSHNRLGSDGAGWARQENINVMPDA TLMAGVDMRLAPAGYRELHWHVAAEWSLVLNGSCRIQAVNENGETFIDDLTAGDVWFFPPGVPHSIQALDDGVEF LLVFDDGGFNEDNTFLATEVFLHTPREVLSKNFGVDVSAFDKLPADELYIFKGTPAPADIEKQNVTTTAGIIPRA QSYSYHFSEQPAHEVAGGSVKIVDPLTFPIASNFSAAVVTVHPGGMREIHWHPTSDEWTFFISGQGRATLFTAPN AATTFDYAGGDVGYFPKSNSHYIENTGDEDLVFVEVLQAPQFTDMALGQWIASTPKQIVADTLNLSEDVLSSIKT EKQYVVAGPSS* |
| Coding | >Pro_DTO377G3_2|g9488.t1 ATGAAGTTCCAACTCTTCGTTACTCTGCTTCCTGCAGTGTTACCCTTGGTGCATGGGATCCCTGCTCGCAGGGAT ACCCCCAACCCGGGTTTGCGAGGAAGCGATTCGCTGGTTGGACATTCGTCATCGAATAAGGGTGGCAGCGACTCG CCACCTGACATCAAGTATACTCTTGTTCCTGGACAGACGGAAGATCCCAATATTGGGCCGTACCTCGATTTCGAG AAAGCCGATAATCCACAGCCGATCCGTGGTTCCGCGGGGGCTGATGATCCCGGTCCGAGGAACTATTACTATGAC AGAATCAATAGTGATAAGCTTGCACCGCCCGGAACTGACCATGGACAGACGATTAATGCGCAGTGGCCAATGGGA TTGAGCCACAACAGGCTTGGATCAGATGGAGCTGGTTGGGCTCGCCAAGAGAACATAAATGTGATGCCGGATGCG ACGCTCATGGCCGGTGTCGATATGCGCTTGGCGCCTGCCGGTTACCGTGAACTTCACTGGCATGTGGCCGCTGAA TGGTCGTTGGTGTTGAATGGATCGTGTCGAATCCAGGCTGTGAACGAGAATGGGGAGACATTTATCGACGACCTT ACTGCTGGCGATGTGTGGTTCTTCCCACCTGGTGTTCCTCATTCTATTCAAGCCCTAGACGATGGAGTCGAGTTC CTTCTGGTATTCGACGACGGTGGCTTCAACGAGGATAATACATTCCTCGCAACAGAAGTCTTCCTCCACACCCCG AGAGAGGTCCTCTCAAAGAACTTCGGAGTTGACGTATCAGCCTTTGACAAGCTCCCCGCCGACGAATTATACATA TTCAAAGGCACGCCCGCCCCAGCAGACATCGAGAAACAGAACGTGACAACAACAGCTGGCATCATACCTCGCGCC CAGAGCTACTCATACCATTTCTCCGAGCAGCCCGCTCACGAAGTTGCCGGGGGCTCAGTGAAGATCGTCGACCCG CTCACCTTCCCAATCGCCAGTAACTTCTCCGCCGCCGTTGTCACCGTCCATCCAGGCGGCATGCGCGAAATCCAC TGGCATCCGACTAGCGACGAATGGACGTTTTTCATTTCGGGCCAGGGCCGCGCAACGCTTTTCACGGCCCCGAAT GCTGCGACTACATTCGATTATGCCGGTGGTGATGTTGGGTACTTCCCGAAGTCTAATAGTCATTATATTGAGAAT ACTGGTGACGAAGACTTGGTTTTTGTGGAGGTGCTCCAGGCGCCTCAGTTTACAGATATGGCTCTTGGTCAGTGG ATCGCGTCTACGCCGAAACAAATCGTTGCGGATACGCTCAACCTCAGTGAGGATGTACTTAGCAGCATTAAGACT GAGAAGCAATATGTTGTCGCTGGTCCTAGCAGTTAG |
| Transcript | >Pro_DTO377G3_2|g9488.t1 ATGAAGTTCCAACTCTTCGTTACTCTGCTTCCTGCAGTGTTACCCTTGGTGCATGGGATCCCTGCTCGCAGGGAT ACCCCCAACCCGGGTTTGCGAGGAAGCGATTCGCTGGTTGGACATTCGTCATCGAATAAGGGTGGCAGCGACTCG CCACCTGACATCAAGTATACTCTTGTTCCTGGACAGACGGAAGATCCCAATATTGGGCCGTACCTCGATTTCGAG AAAGCCGATAATCCACAGCCGATCCGTGGTTCCGCGGGGGCTGATGATCCCGGTCCGAGGAACTATTACTATGAC AGAATCAATAGTGATAAGCTTGCACCGCCCGGAACTGACCATGGACAGACGATTAATGCGCAGTGGCCAATGGGA TTGAGCCACAACAGGCTTGGATCAGATGGAGCTGGTTGGGCTCGCCAAGAGAACATAAATGTGATGCCGGATGCG ACGCTCATGGCCGGTGTCGATATGCGCTTGGCGCCTGCCGGTTACCGTGAACTTCACTGGCATGTGGCCGCTGAA TGGTCGTTGGTGTTGAATGGATCGTGTCGAATCCAGGCTGTGAACGAGAATGGGGAGACATTTATCGACGACCTT ACTGCTGGCGATGTGTGGTTCTTCCCACCTGGTGTTCCTCATTCTATTCAAGCCCTAGACGATGGAGTCGAGTTC CTTCTGGTATTCGACGACGGTGGCTTCAACGAGGATAATACATTCCTCGCAACAGAAGTCTTCCTCCACACCCCG AGAGAGGTCCTCTCAAAGAACTTCGGAGTTGACGTATCAGCCTTTGACAAGCTCCCCGCCGACGAATTATACATA TTCAAAGGCACGCCCGCCCCAGCAGACATCGAGAAACAGAACGTGACAACAACAGCTGGCATCATACCTCGCGCC CAGAGCTACTCATACCATTTCTCCGAGCAGCCCGCTCACGAAGTTGCCGGGGGCTCAGTGAAGATCGTCGACCCG CTCACCTTCCCAATCGCCAGTAACTTCTCCGCCGCCGTTGTCACCGTCCATCCAGGCGGCATGCGCGAAATCCAC TGGCATCCGACTAGCGACGAATGGACGTTTTTCATTTCGGGCCAGGGCCGCGCAACGCTTTTCACGGCCCCGAAT GCTGCGACTACATTCGATTATGCCGGTGGTGATGTTGGGTACTTCCCGAAGTCTAATAGTCATTATATTGAGAAT ACTGGTGACGAAGACTTGGTTTTTGTGGAGGTGCTCCAGGCGCCTCAGTTTACAGATATGGCTCTTGGTCAGTGG ATCGCGTCTACGCCGAAACAAATCGTTGCGGATACGCTCAACCTCAGTGAGGATGTACTTAGCAGCATTAAGACT GAGAAGCAATATGTTGTCGCTGGTCCTAGCAGTTAG |
| Gene | >Pro_DTO377G3_2|g9488.t1 ATGAAGTTCCAACTCTTCGTTACTCTGCTTCCTGCAGTGTTACCCTTGGTGCATGGGATCCCTGCTCGCAGGGAT ACCCCCAACCCGGGTTTGCGAGGAAGCGATTCGCTGGTTGGACATTCGTCATCGAATAAGGGTGGCAGCGACTCG CCACCTGACATCAAGTATACTCTTGTTCCTGGACAGACGGAAGATCCCAATATTGGGCCGTACCTCGATTTCGAG AAAGCCGATAATCCACAGCCGATCCGTGGTTCCGCGGGGGCTGATGATCCCGGTCCGAGTATGCAATGCTATTCT GATTGGATGTATAATACAGAGTACACTGACATTCTTTTAGGGAACTATTACTATGACAGAATCAATAGTGATAAG CTTGCACCGCCCGGAACTGACCATGGACAGACGATTAATGCGCAGTGGCCAATGGGTAAGTCTGGTTTGTGCAGA GAAATGTACAATTTGCTAACTGTATGCTAGGATTGAGCCACAACAGGTAATCTTCATCCCCGAACAAGAACACCG CAGATACTCATATTTTCTTAAGGCTTGGATCAGATGGAGCTGGTTGGGCTCGCCAAGAGAACATAAATGTGATGC CGGATGCGACGCTCATGGCCGGTGTCGATATGCGCTTGGCGCCTGCCGGTTACCGTGAACTTCACTGGCATGTGG CCGCTGAATGGTCGTTGGTGTTGAATGGATCGTGTCGAATCCAGGTATTGGCTCATCTCGAAGGGATTAAATAAG TACTAACCAGCCAGGCTGTGAACGAGAATGGGGAGACATTTATCGACGACCTTACTGCTGGCGATGTGTGGTTCT TCCCACCGTGAGTATTGTAATGTGCACGGATAATGCTTTATACTAATTATTTATGAGTGGTGTTCCTCATTCTAT TCAAGCCCTAGACGATGGAGTCGAGTTCCTTCTGGTATTCGACGACGGTGGCTTCAACGAGGATAATACATTCCT CGCAACAGAAGTCTTCCTCCACACCCCGGTAAAGAAAAGCAGATCTTACACCAAAGAAATCCAATTGCTAACCCA TACACAGAGAGAGGTCCTCTCAAAGAACTTCGGAGTTGACGTATCAGCCTTTGACAAGCTCCCCGCCGACGAATT ATACATATTCAAAGGCACGCCCGCCCCAGCAGACATCGAGAAACAGAACGTGACAACAACAGCTGGCATCATACC TCGCGCCCAGAGCTACTCATACCATTTCTCCGAGCAGCCCGCTCACGAAGTTGCCGGGGGCTCAGTGAAGATCGT CGACCCGCTCACCTTCCCAATCGCCAGTAACTTCTCCGCCGCCGTTGTCACCGTCCATCCAGGCGGCATGCGCGA AATCCACTGGCATCCGACTAGCGACGAATGGACGTTTTTCATTTCGGGCCAGGGCCGCGCAACGCTTTTCACGGC CCCGAATGCTGCGACTACATTCGATTATGCCGGTGGTGATGTTGGGTACTTCCCGAAGTCTAATAGTCATTATAT TGAGAATACTGGTGACGAAGACTTGGTTTTTGTGGAGGTGCTCCAGGCGCCTCAGTTTACAGGTATTTTTCCCTT GATATATGTTTGGGGTTTGTGTACTAACAATAGTAGATATGGCTCTTGGTCAGTGGATCGCGTCTACGCCGAAAC AAATCGTTGCGGATACGCTCAACCTCAGTGAGGATGTACTTAGCAGCATTAAGACTGAGAAGCAATATGTTGTCG CTGGTCCTAGCAGTTAG |