Fungal Genomics

at Utrecht University

General Properties

Protein IDPro_DTO377G3_2|g9488.t1
Gene name
Locationscaffold_49:11032..12774
Strand+
Gene length (bp)1742
Transcript length (bp)1386
Coding sequence length (bp)1386
Protein length (aa) 462

Overview

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00190 Cupin_1 Cupin 6.6E-19 153 262
PF00190 Cupin_1 Cupin 7.9E-19 312 442
PF07883 Cupin_2 Cupin domain 3.3E-08 158 222
PF07883 Cupin_2 Cupin domain 8.6E-12 338 411
PF02311 AraC_binding AraC-like ligand binding domain 2.9E-05 167 221

GO

GO Term Description Terminal node
GO:0006355 regulation of transcription, DNA-templated Yes
GO:0009889 regulation of biosynthetic process No
GO:0065007 biological regulation No
GO:0080090 regulation of primary metabolic process No
GO:0060255 regulation of macromolecule metabolic process No
GO:0010556 regulation of macromolecule biosynthetic process No
GO:0031323 regulation of cellular metabolic process No
GO:0010468 regulation of gene expression No
GO:0051171 regulation of nitrogen compound metabolic process No
GO:1903506 regulation of nucleic acid-templated transcription No
GO:0050794 regulation of cellular process No
GO:0019222 regulation of metabolic process No
GO:0050789 regulation of biological process No
GO:0019219 regulation of nucleobase-containing compound metabolic process No
GO:0051252 regulation of RNA metabolic process No
GO:2001141 regulation of RNA biosynthetic process No
GO:0031326 regulation of cellular biosynthetic process No
GO:0008150 biological_process No

Deeploc

Deeploc data not available for this genome

SignalP

SignalP signal predicted Location Score
Yes 1 - 19 0.999791

Transmembrane Domains

(None)

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
3d_25C Three days - 25 degrees Celsius 3.05 0.76 5.35
5d_25C Five days - 25 degrees Celsius 5.59 1.79 9.39
7d_25C Seven days - 25 degrees Celsius 8.68 3.20 14.16
10d_25C Ten days - 25 degrees Celsius 6.17 2.14 10.21
7d_15C Seven days - 15 degrees Celsius 3.97 1.07 6.88
7d_30C Seven days - 30 degrees Celsius 3.30 0.85 5.74

Differential expression

Label1 Label2 Q-value Significant difference
3d_25C 5d_25C 0.130081 no
3d_25C 7d_25C 0.004045 yes
3d_25C 7d_15C 0.606329 no
3d_25C 7d_30C 0.899168 no
3d_25C 10d_25C 0.055667 no
5d_25C 7d_25C 0.268584 no
5d_25C 7d_15C 0.466411 no
5d_25C 7d_30C 0.205431 no
5d_25C 10d_25C 0.850908 no
7d_25C 7d_15C 0.042422 yes
7d_25C 7d_30C 0.008807 yes
7d_25C 10d_25C 0.394330 no
7d_15C 7d_30C 0.733803 no
7d_15C 10d_25C 0.286152 no
7d_30C 10d_25C 0.097443 no

Orthologs

Orthofinder run ID2
Orthogroup4421
Change Orthofinder run
Species Protein ID
Penicillium roqueforti DTO002I6 Pro_DTO002I6_2|g4990.t1
Penicillium roqueforti DTO003C3 Pro_DTO003C3_2|g5933.t1
Penicillium roqueforti DTO003H1 (CBS 147308) Pro_DTO003H1_2|g9005.t1
Penicillium roqueforti DTO006G1 Pro_DTO006G1_2|g5502.t1
Penicillium roqueforti DTO006G7 Pro_DTO006G7_3|g7979.t1
Penicillium roqueforti DTO012A1 Pro_DTO012A1_2|g5565.t1
Penicillium roqueforti DTO012A2 (CBS 147309) Pro_DTO012A2_2|g5940.t1
Penicillium roqueforti DTO012A6 (CBS 147310) Pro_DTO012A6_2|g7404.t1
Penicillium roqueforti DTO012A7 Pro_DTO012A7_2|g6815.t1
Penicillium roqueforti DTO012A8 Pro_DTO012A8_2|g3475.t1
Penicillium roqueforti DTO012A9 Pro_DTO012A9_2|g4031.t1
Penicillium roqueforti DTO013E5 Pro_DTO013E5_2|g5687.t1
Penicillium roqueforti DTO013F2 Pro_DTO013F2_2|g5928.t1
Penicillium roqueforti DTO013F5 (CBS 147311) Pro_DTO013F5_2|g6855.t1
Penicillium roqueforti DTO027I6 Pro_DTO027I6_2|g8389.t1
Penicillium roqueforti DTO032C6 Pro_DTO032C6_2|g7118.t1
Penicillium roqueforti DTO039G3 Pro_DTO039G3_2|g7487.t1
Penicillium roqueforti DTO046C5 Pro_DTO046C5_2|g3636.t1
Penicillium roqueforti DTO070G2 (CBS 147317) Pro_DTO070G2_2|g8891.t1
Penicillium roqueforti DTO081F9 (CBS 147318) Pro_DTO081F9_2|g8318.t1
Penicillium roqueforti DTO101D6 (CBS 147325) Pro_DTO101D6_2|g5553.t1
Penicillium roqueforti DTO102I9 (CBS 147326) Pro_DTO102I9_2|g5767.t1
Penicillium roqueforti DTO126G2 (CBS 147330) Pro_DTO126G2_2|g8016.t1
Penicillium roqueforti DTO127F7 (CBS 147331) Pro_DTO127F7_2|g8297.t1
Penicillium roqueforti DTO127F9 (CBS 147332) Pro_DTO127F9_2|g6231.t1
Penicillium roqueforti DTO130C1 (CBS 147333) Pro_DTO130C1_2|g9255.t1
Penicillium roqueforti DTO163C3 (CBS 147337) Pro_DTO163C3_2|g8460.t1
Penicillium roqueforti DTO163F5 (CBS 147338) Pro_DTO163F5_2|g9468.t1
Penicillium roqueforti DTO163G4 (CBS 147339) Pro_DTO163G4_2|g5129.t1
Penicillium roqueforti DTO265D5 (CBS 147372) Pro_DTO265D5_2|g8284.t1
Penicillium roqueforti DTO369A1 (CBS 147354) Pro_DTO369A1_2|g7544.t1
Penicillium roqueforti DTO375B1 (CBS 147355) Pro_DTO375B1_2|g7024.t1
Penicillium roqueforti DTO377G2 (LCP 96.3914a) Pro_DTO377G2_2|g5762.t1
Penicillium roqueforti LCP96 04111 Pro_DTO377G3_2|g9488.t1 (this protein)

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Pro_DTO377G3_2|g9488.t1
MKFQLFVTLLPAVLPLVHGIPARRDTPNPGLRGSDSLVGHSSSNKGGSDSPPDIKYTLVPGQTEDPNIGPYLDFE
KADNPQPIRGSAGADDPGPRNYYYDRINSDKLAPPGTDHGQTINAQWPMGLSHNRLGSDGAGWARQENINVMPDA
TLMAGVDMRLAPAGYRELHWHVAAEWSLVLNGSCRIQAVNENGETFIDDLTAGDVWFFPPGVPHSIQALDDGVEF
LLVFDDGGFNEDNTFLATEVFLHTPREVLSKNFGVDVSAFDKLPADELYIFKGTPAPADIEKQNVTTTAGIIPRA
QSYSYHFSEQPAHEVAGGSVKIVDPLTFPIASNFSAAVVTVHPGGMREIHWHPTSDEWTFFISGQGRATLFTAPN
AATTFDYAGGDVGYFPKSNSHYIENTGDEDLVFVEVLQAPQFTDMALGQWIASTPKQIVADTLNLSEDVLSSIKT
EKQYVVAGPSS*
Coding >Pro_DTO377G3_2|g9488.t1
ATGAAGTTCCAACTCTTCGTTACTCTGCTTCCTGCAGTGTTACCCTTGGTGCATGGGATCCCTGCTCGCAGGGAT
ACCCCCAACCCGGGTTTGCGAGGAAGCGATTCGCTGGTTGGACATTCGTCATCGAATAAGGGTGGCAGCGACTCG
CCACCTGACATCAAGTATACTCTTGTTCCTGGACAGACGGAAGATCCCAATATTGGGCCGTACCTCGATTTCGAG
AAAGCCGATAATCCACAGCCGATCCGTGGTTCCGCGGGGGCTGATGATCCCGGTCCGAGGAACTATTACTATGAC
AGAATCAATAGTGATAAGCTTGCACCGCCCGGAACTGACCATGGACAGACGATTAATGCGCAGTGGCCAATGGGA
TTGAGCCACAACAGGCTTGGATCAGATGGAGCTGGTTGGGCTCGCCAAGAGAACATAAATGTGATGCCGGATGCG
ACGCTCATGGCCGGTGTCGATATGCGCTTGGCGCCTGCCGGTTACCGTGAACTTCACTGGCATGTGGCCGCTGAA
TGGTCGTTGGTGTTGAATGGATCGTGTCGAATCCAGGCTGTGAACGAGAATGGGGAGACATTTATCGACGACCTT
ACTGCTGGCGATGTGTGGTTCTTCCCACCTGGTGTTCCTCATTCTATTCAAGCCCTAGACGATGGAGTCGAGTTC
CTTCTGGTATTCGACGACGGTGGCTTCAACGAGGATAATACATTCCTCGCAACAGAAGTCTTCCTCCACACCCCG
AGAGAGGTCCTCTCAAAGAACTTCGGAGTTGACGTATCAGCCTTTGACAAGCTCCCCGCCGACGAATTATACATA
TTCAAAGGCACGCCCGCCCCAGCAGACATCGAGAAACAGAACGTGACAACAACAGCTGGCATCATACCTCGCGCC
CAGAGCTACTCATACCATTTCTCCGAGCAGCCCGCTCACGAAGTTGCCGGGGGCTCAGTGAAGATCGTCGACCCG
CTCACCTTCCCAATCGCCAGTAACTTCTCCGCCGCCGTTGTCACCGTCCATCCAGGCGGCATGCGCGAAATCCAC
TGGCATCCGACTAGCGACGAATGGACGTTTTTCATTTCGGGCCAGGGCCGCGCAACGCTTTTCACGGCCCCGAAT
GCTGCGACTACATTCGATTATGCCGGTGGTGATGTTGGGTACTTCCCGAAGTCTAATAGTCATTATATTGAGAAT
ACTGGTGACGAAGACTTGGTTTTTGTGGAGGTGCTCCAGGCGCCTCAGTTTACAGATATGGCTCTTGGTCAGTGG
ATCGCGTCTACGCCGAAACAAATCGTTGCGGATACGCTCAACCTCAGTGAGGATGTACTTAGCAGCATTAAGACT
GAGAAGCAATATGTTGTCGCTGGTCCTAGCAGTTAG
Transcript >Pro_DTO377G3_2|g9488.t1
ATGAAGTTCCAACTCTTCGTTACTCTGCTTCCTGCAGTGTTACCCTTGGTGCATGGGATCCCTGCTCGCAGGGAT
ACCCCCAACCCGGGTTTGCGAGGAAGCGATTCGCTGGTTGGACATTCGTCATCGAATAAGGGTGGCAGCGACTCG
CCACCTGACATCAAGTATACTCTTGTTCCTGGACAGACGGAAGATCCCAATATTGGGCCGTACCTCGATTTCGAG
AAAGCCGATAATCCACAGCCGATCCGTGGTTCCGCGGGGGCTGATGATCCCGGTCCGAGGAACTATTACTATGAC
AGAATCAATAGTGATAAGCTTGCACCGCCCGGAACTGACCATGGACAGACGATTAATGCGCAGTGGCCAATGGGA
TTGAGCCACAACAGGCTTGGATCAGATGGAGCTGGTTGGGCTCGCCAAGAGAACATAAATGTGATGCCGGATGCG
ACGCTCATGGCCGGTGTCGATATGCGCTTGGCGCCTGCCGGTTACCGTGAACTTCACTGGCATGTGGCCGCTGAA
TGGTCGTTGGTGTTGAATGGATCGTGTCGAATCCAGGCTGTGAACGAGAATGGGGAGACATTTATCGACGACCTT
ACTGCTGGCGATGTGTGGTTCTTCCCACCTGGTGTTCCTCATTCTATTCAAGCCCTAGACGATGGAGTCGAGTTC
CTTCTGGTATTCGACGACGGTGGCTTCAACGAGGATAATACATTCCTCGCAACAGAAGTCTTCCTCCACACCCCG
AGAGAGGTCCTCTCAAAGAACTTCGGAGTTGACGTATCAGCCTTTGACAAGCTCCCCGCCGACGAATTATACATA
TTCAAAGGCACGCCCGCCCCAGCAGACATCGAGAAACAGAACGTGACAACAACAGCTGGCATCATACCTCGCGCC
CAGAGCTACTCATACCATTTCTCCGAGCAGCCCGCTCACGAAGTTGCCGGGGGCTCAGTGAAGATCGTCGACCCG
CTCACCTTCCCAATCGCCAGTAACTTCTCCGCCGCCGTTGTCACCGTCCATCCAGGCGGCATGCGCGAAATCCAC
TGGCATCCGACTAGCGACGAATGGACGTTTTTCATTTCGGGCCAGGGCCGCGCAACGCTTTTCACGGCCCCGAAT
GCTGCGACTACATTCGATTATGCCGGTGGTGATGTTGGGTACTTCCCGAAGTCTAATAGTCATTATATTGAGAAT
ACTGGTGACGAAGACTTGGTTTTTGTGGAGGTGCTCCAGGCGCCTCAGTTTACAGATATGGCTCTTGGTCAGTGG
ATCGCGTCTACGCCGAAACAAATCGTTGCGGATACGCTCAACCTCAGTGAGGATGTACTTAGCAGCATTAAGACT
GAGAAGCAATATGTTGTCGCTGGTCCTAGCAGTTAG
Gene >Pro_DTO377G3_2|g9488.t1
ATGAAGTTCCAACTCTTCGTTACTCTGCTTCCTGCAGTGTTACCCTTGGTGCATGGGATCCCTGCTCGCAGGGAT
ACCCCCAACCCGGGTTTGCGAGGAAGCGATTCGCTGGTTGGACATTCGTCATCGAATAAGGGTGGCAGCGACTCG
CCACCTGACATCAAGTATACTCTTGTTCCTGGACAGACGGAAGATCCCAATATTGGGCCGTACCTCGATTTCGAG
AAAGCCGATAATCCACAGCCGATCCGTGGTTCCGCGGGGGCTGATGATCCCGGTCCGAGTATGCAATGCTATTCT
GATTGGATGTATAATACAGAGTACACTGACATTCTTTTAGGGAACTATTACTATGACAGAATCAATAGTGATAAG
CTTGCACCGCCCGGAACTGACCATGGACAGACGATTAATGCGCAGTGGCCAATGGGTAAGTCTGGTTTGTGCAGA
GAAATGTACAATTTGCTAACTGTATGCTAGGATTGAGCCACAACAGGTAATCTTCATCCCCGAACAAGAACACCG
CAGATACTCATATTTTCTTAAGGCTTGGATCAGATGGAGCTGGTTGGGCTCGCCAAGAGAACATAAATGTGATGC
CGGATGCGACGCTCATGGCCGGTGTCGATATGCGCTTGGCGCCTGCCGGTTACCGTGAACTTCACTGGCATGTGG
CCGCTGAATGGTCGTTGGTGTTGAATGGATCGTGTCGAATCCAGGTATTGGCTCATCTCGAAGGGATTAAATAAG
TACTAACCAGCCAGGCTGTGAACGAGAATGGGGAGACATTTATCGACGACCTTACTGCTGGCGATGTGTGGTTCT
TCCCACCGTGAGTATTGTAATGTGCACGGATAATGCTTTATACTAATTATTTATGAGTGGTGTTCCTCATTCTAT
TCAAGCCCTAGACGATGGAGTCGAGTTCCTTCTGGTATTCGACGACGGTGGCTTCAACGAGGATAATACATTCCT
CGCAACAGAAGTCTTCCTCCACACCCCGGTAAAGAAAAGCAGATCTTACACCAAAGAAATCCAATTGCTAACCCA
TACACAGAGAGAGGTCCTCTCAAAGAACTTCGGAGTTGACGTATCAGCCTTTGACAAGCTCCCCGCCGACGAATT
ATACATATTCAAAGGCACGCCCGCCCCAGCAGACATCGAGAAACAGAACGTGACAACAACAGCTGGCATCATACC
TCGCGCCCAGAGCTACTCATACCATTTCTCCGAGCAGCCCGCTCACGAAGTTGCCGGGGGCTCAGTGAAGATCGT
CGACCCGCTCACCTTCCCAATCGCCAGTAACTTCTCCGCCGCCGTTGTCACCGTCCATCCAGGCGGCATGCGCGA
AATCCACTGGCATCCGACTAGCGACGAATGGACGTTTTTCATTTCGGGCCAGGGCCGCGCAACGCTTTTCACGGC
CCCGAATGCTGCGACTACATTCGATTATGCCGGTGGTGATGTTGGGTACTTCCCGAAGTCTAATAGTCATTATAT
TGAGAATACTGGTGACGAAGACTTGGTTTTTGTGGAGGTGCTCCAGGCGCCTCAGTTTACAGGTATTTTTCCCTT
GATATATGTTTGGGGTTTGTGTACTAACAATAGTAGATATGGCTCTTGGTCAGTGGATCGCGTCTACGCCGAAAC
AAATCGTTGCGGATACGCTCAACCTCAGTGAGGATGTACTTAGCAGCATTAAGACTGAGAAGCAATATGTTGTCG
CTGGTCCTAGCAGTTAG

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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