Fungal Genomics

at Utrecht University

General Properties

Protein ID	Pro_DTO377G3_2\|g9484.t1
Gene name
Location	scaffold_49:1141..3550
Strand	+
Gene length (bp)	2409
Transcript length (bp)	1329
Coding sequence length (bp)	1329
Protein length (aa)	443

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF00890	FAD_binding_2	FAD binding domain	4.9E-26	19	441

GO

(None)

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 29	0.5

Transmembrane Domains

Domain #	Start	End	Length
1	15	37	22

Transcription Factor Class

(None)

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

Expression values

Label	Description	Expression (RPKM)	Confidence interval (low)	Confidence interval (high)
3d_25C	Three days - 25 degrees Celsius	0.07	0.0	0.22
5d_25C	Five days - 25 degrees Celsius	0.19	0.0	0.55
7d_25C	Seven days - 25 degrees Celsius	0.00	0.0	0.00
10d_25C	Ten days - 25 degrees Celsius	0.03	0.0	0.14
7d_15C	Seven days - 15 degrees Celsius	0.07	0.0	0.23
7d_30C	Seven days - 30 degrees Celsius	0.00	0.0	0.00

Differential expression

Label1	Label2	Q-value	Significant difference
3d_25C	5d_25C	1.0	no
3d_25C	7d_25C	1.0	no
3d_25C	7d_15C	1.0	no
3d_25C	7d_30C	1.0	no
3d_25C	10d_25C	1.0	no
5d_25C	7d_25C	1.0	no
5d_25C	7d_15C	1.0	no
5d_25C	7d_30C	1.0	no
5d_25C	10d_25C	1.0	no
7d_25C	7d_15C	1.0	no
7d_25C	7d_30C	1.0	no
7d_25C	10d_25C	1.0	no
7d_15C	7d_30C	1.0	no
7d_15C	10d_25C	1.0	no
7d_30C	10d_25C	1.0	no

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Pro_DTO377G3_2\|g9484.t1 MSTLSPPATTISDAVTVYDLIVVGSGFAGCMTALNFLEDTKTQGKAAKLALIEAGKDGERCGASRWTPAFFRLDK NNRFDSGFKDEMKLVSNGLADQAYCEKLEAEVPTTVKFLLDHGIIVQHQDERNVYLGFNTDQNFAKGDGGGYAII LKLFEHILSFPQVDIMWETNAEELLTHGDGTIRGVKVRKNDGRFDNVFGEQVMLSCGGFEGNREMLGRYVGPRAD QLGLVAPGLKYNTGFGLKMGLQVGAATAGSFHGLHCELVDTRSSKPEATVWGHSFGIVVNEHSKRFYDEGNRSLF ATCEVIAYETWRDQNQKAYFVTDAPIMDRFRPGWVYDTTDLDPEKGETIEDLAKKLGLVPQELKKTVDEYNASIN DKEFNPLVLDGKSTFGLTPNKTNWAAPIKVAPFYGYPLTAKVVITFGGLKVDLESRVLSTTGTPIPE*
Coding	>Pro_DTO377G3_2\|g9484.t1 ATGTCGACCCTCAGTCCACCTGCCACTACCATTTCGGATGCCGTTACCGTGTACGACCTTATTGTAGTTGGCTCT GGTTTCGCTGGGTGTATGACTGCTCTCAACTTCCTCGAAGATACCAAGACCCAAGGAAAGGCAGCGAAACTCGCC TTGATCGAGGCCGGTAAAGATGGAGAACGATGTGGTGCCAGCAGATGGACACCGGCCTTCTTTCGGTTGGACAAG AATAACAGGTTTGATAGCGGCTTCAAGGATGAGATGAAGCTCGTCAGTAATGGACTTGCCGATCAGGCATACTGC GAGAAATTGGAAGCCGAAGTTCCCACTACAGTGAAGTTTCTTTTGGACCACGGAATCATAGTCCAACATCAAGAT GAGAGAAATGTCTACCTCGGATTTAATACCGACCAGAACTTCGCCAAAGGAGACGGTGGCGGATATGCCATAATC CTCAAGCTTTTCGAGCACATACTGTCGTTCCCTCAGGTGGACATTATGTGGGAGACAAATGCGGAGGAACTTCTG ACTCATGGCGATGGTACCATTCGTGGTGTCAAGGTTCGAAAGAACGACGGCCGCTTTGACAATGTGTTTGGTGAG CAAGTCATGCTATCATGTGGTGGCTTCGAGGGTAATCGCGAAATGCTGGGCCGATACGTCGGACCTAGAGCTGAC CAACTTGGGTTGGTAGCCCCTGGTCTCAAGTATAATACGGGGTTTGGGCTCAAGATGGGCTTACAAGTCGGTGCC GCAACGGCCGGCTCTTTCCATGGCCTGCACTGTGAACTTGTTGATACTCGCTCCTCAAAGCCAGAGGCAACTGTC TGGGGCCATAGCTTCGGTATCGTCGTCAACGAACACTCCAAGCGATTTTACGATGAAGGGAATCGATCCCTCTTC GCTACTTGCGAAGTTATTGCTTATGAGACATGGCGCGACCAAAACCAAAAAGCATATTTTGTTACCGATGCTCCC ATTATGGACCGATTCCGACCTGGTTGGGTTTATGATACAACTGATCTGGACCCAGAGAAAGGCGAGACGATCGAA GATCTCGCCAAAAAACTCGGTCTCGTTCCCCAAGAACTGAAGAAGACGGTGGATGAATATAATGCTTCAATTAAT GACAAAGAATTCAACCCTTTGGTTCTTGACGGCAAGAGCACCTTCGGCCTAACTCCTAACAAGACCAACTGGGCC GCACCGATCAAAGTGGCTCCTTTCTATGGGTATCCTCTGACTGCAAAGGTTGTAATCACTTTTGGAGGACTGAAG GTCGATCTTGAGTCCCGTGTGCTCTCCACGACGGGTACCCCAATTCCAGAGTAA
Transcript	>Pro_DTO377G3_2\|g9484.t1 ATGTCGACCCTCAGTCCACCTGCCACTACCATTTCGGATGCCGTTACCGTGTACGACCTTATTGTAGTTGGCTCT GGTTTCGCTGGGTGTATGACTGCTCTCAACTTCCTCGAAGATACCAAGACCCAAGGAAAGGCAGCGAAACTCGCC TTGATCGAGGCCGGTAAAGATGGAGAACGATGTGGTGCCAGCAGATGGACACCGGCCTTCTTTCGGTTGGACAAG AATAACAGGTTTGATAGCGGCTTCAAGGATGAGATGAAGCTCGTCAGTAATGGACTTGCCGATCAGGCATACTGC GAGAAATTGGAAGCCGAAGTTCCCACTACAGTGAAGTTTCTTTTGGACCACGGAATCATAGTCCAACATCAAGAT GAGAGAAATGTCTACCTCGGATTTAATACCGACCAGAACTTCGCCAAAGGAGACGGTGGCGGATATGCCATAATC CTCAAGCTTTTCGAGCACATACTGTCGTTCCCTCAGGTGGACATTATGTGGGAGACAAATGCGGAGGAACTTCTG ACTCATGGCGATGGTACCATTCGTGGTGTCAAGGTTCGAAAGAACGACGGCCGCTTTGACAATGTGTTTGGTGAG CAAGTCATGCTATCATGTGGTGGCTTCGAGGGTAATCGCGAAATGCTGGGCCGATACGTCGGACCTAGAGCTGAC CAACTTGGGTTGGTAGCCCCTGGTCTCAAGTATAATACGGGGTTTGGGCTCAAGATGGGCTTACAAGTCGGTGCC GCAACGGCCGGCTCTTTCCATGGCCTGCACTGTGAACTTGTTGATACTCGCTCCTCAAAGCCAGAGGCAACTGTC TGGGGCCATAGCTTCGGTATCGTCGTCAACGAACACTCCAAGCGATTTTACGATGAAGGGAATCGATCCCTCTTC GCTACTTGCGAAGTTATTGCTTATGAGACATGGCGCGACCAAAACCAAAAAGCATATTTTGTTACCGATGCTCCC ATTATGGACCGATTCCGACCTGGTTGGGTTTATGATACAACTGATCTGGACCCAGAGAAAGGCGAGACGATCGAA GATCTCGCCAAAAAACTCGGTCTCGTTCCCCAAGAACTGAAGAAGACGGTGGATGAATATAATGCTTCAATTAAT GACAAAGAATTCAACCCTTTGGTTCTTGACGGCAAGAGCACCTTCGGCCTAACTCCTAACAAGACCAACTGGGCC GCACCGATCAAAGTGGCTCCTTTCTATGGGTATCCTCTGACTGCAAAGGTTGTAATCACTTTTGGAGGACTGAAG GTCGATCTTGAGTCCCGTGTGCTCTCCACGACGGGTACCCCAATTCCAGAGTAA
Gene	>Pro_DTO377G3_2\|g9484.t1 ATGTCGACCCTCAGTCCACCTGCCACTACCATTTCGGATGCCGTTACCGTGTACGACCTTATTGTAGTTGGCTCT GGTTTCGCTGTAAGCTTGACAAATAAGCGGATCGAGACGACATGGCTAATGATGATTCTCGTGATAATGCTTAGG GGTGTATGACTGCTCTCAACTTCCTCGAAGATACCAAGACCCAAGGAAAGGCAGCGAAACTCGCCTTGATCGAGG CCGGTAAAGATGGAGAACGATGTGGTGCCAGCAGGTAGAACCTTCCGAGTTCTAGTGATAATTGAGACGTATGTG TGCTGACCAGATTCATTCAGATGGACACCGGCCTTCTTTCGGTTGGACAAGAGTGTGTTGCAAGATAATTGCAAA TTGAAGTACAACTTACTAAAGACTGTGCAGATAACAGGTTTGATAGCGGCTTCAAGGATGAGATGAAGGTAAGTG GCAGGCCAATGACTTTTATATTCCTTGCGACTGACTATAGTCTAGCTCGTCAGGTAAGCGTTCTAGTCAGCCCGA AGATCGCACTTTTTAATTGTGGCAGTAATGGACTTGCCGATCAGGCATACTGCGAGAAATTGGAAGCCGAAGTTC CCACTACAGTGAAGTTTCTTTTGGACCGTAAACAGATTCGGAAGCTTTCAATTTACTCGGACTGACACTGACATT ATAAGGTAGACGGAATCATAGTCCAACATCAAGATGAGAGAAATGTCTACCTCGGATTTAATACCGGTAAGCCCT TTGAGAAATCCAATTTCAGGCTATGCCAAATGCTAATGAACTTCTAGACCAGAACTTCGCCAAAGGAGACGTACG CATCCTAAAATGACTTTTATACCAGCCAATATCTAATCACTACAAATAGGGTGGCGGATATGCCATAATCCTCAA GCTTTTCGAGCACATACTGTCGTTCCCTCAGGTGGACATTATGTGGGAGACAAATGCGGAGGAACTTCTGACTCA TGGCGATGGTACCATTCGTGGTGTCAAGGTTCGAAAGAACGACGGCCGCTTTGACAATGTGTTTGGTGAGCAAGT CATGCTATCATGTGGTGGCTTCGAGGGTAATCGCGAAATGTGAGTGTGATCAGGACTTATTCGATATGATATGAA TCTAAAAAGTATGGAAGGCTGGGCCGATACGTCGGACCTAGAGCTGACCAACTTGGGTTGGTAGCCCCTGGTCTC AAGTATAATACGGGGTTTGGGCTCAAGATGGGCTTACAAGTCGGTGCCGCAACGGCCGGCTCTTTCCATGGCCTG CACGTAAGTTACGCAAATGAAGATCTTATGAGATTCACTAACCCGTCGCAGTGTGAACTTGTTGATACTCGCTCC TCAAAGCCAGAGGCAACTGTCTGGGGCCATAGCTTCGGTATCGTCGTCAACGAGTATGCTCTAATCATTTAAATG AAATGAGGGATAAAGGCTCACATTACCTTCTTTAGACACTCCAAGCGATTTTACGATGAAGGGAATCGATCGTAT GTTCGGCCTCCAGCTTGTACTAGTATCAAACTGACAAATGCAGCCTCTTCGCTACTTGCGAAGTTATTGCTTATG AGACATGGCGCGGTAAGTAATGAGGTAGGTCGAAGGCGAACATGCACCGCTAACGTGTATCTCAGACCAAAACCA AAAAGCATATTTGTGAGTCAGACAAACCTATATTATAAACGGTATATGGCTAAAACGCCTCCAAGTGTTACCGAT GCTCCCATTATGGACCGATTCCGACCTGGTTGGGTTTATGATACAACTGATCTGGACCCAGAGAAAGGCGAGACG ATCGAAGATCTCGCCAAAAAACTCGGTCTCGTTCCCCAAGAACTGAAGAAGACGGTGGATGAATATAATGCTTCG TAAGTCAGCTAGCAGGAATGTCAGAGTCTCACACTAATGGCTGGTGGCAGAATTAATGACAAAGAATTCAACCCT TTGGTTCTTGACGGCAAGAGCACCTTCGGCCTAACTCCTAACAAGACCAACTGGGCCGCACCGATCAAAGTGGCT CCTTTCTATGGGTAATGCTCCCCTCAAATCATATAATCTGCTTAGATACCACTGTTACTGATGGGTATCTAGGTA TCCTCTGACTGCAAAGGTTGTAATCACTTTTGGAGGACTGAAGGTCGATCTTGAGTCCCGTGTGCTCTCCACGAC GGGTACCCCAATTCCAGGTATGATTTCTAATATTTCCTTATCACAGCAAAATCCATCAGACCTTCGCACAAACAC GCTAAACTTACATCTTGCGATCATTTCCTCACTGACACGTCACGTCGTATTAAGGACTTTACTGCGCTGGTGAAC TTAGCGGGTTTTATTACAATGAGGTAAGCCCAACCTAATGATCCGTTATTGAAGCAAAATAATTCTGACAAACCA ACAGAGTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

Built with Python Django and Wagtail