Fungal Genomics

at Utrecht University

General Properties

Protein IDPro_DTO377G3_2|g9483.t1
Gene name
Locationscaffold_48:120677..121157
Strand-
Gene length (bp)480
Transcript length (bp)309
Coding sequence length (bp)309
Protein length (aa) 103

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 3.6E-23 4 74

GO

GO Term Description Terminal node
GO:0003723 RNA binding Yes
GO:0097159 organic cyclic compound binding No
GO:0005488 binding No
GO:1901363 heterocyclic compound binding No
GO:0003676 nucleic acid binding No
GO:0003674 molecular_function No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 59 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
3d_25C Three days - 25 degrees Celsius 339.72 186.84 492.61
5d_25C Five days - 25 degrees Celsius 338.56 186.14 490.99
7d_25C Seven days - 25 degrees Celsius 448.96 258.85 639.06
10d_25C Ten days - 25 degrees Celsius 401.26 227.15 575.38
7d_15C Seven days - 15 degrees Celsius 1084.58 664.43 1504.73
7d_30C Seven days - 30 degrees Celsius 252.46 129.98 374.93

Differential expression

Label1 Label2 Q-value Significant difference
3d_25C 5d_25C 0.993768 no
3d_25C 7d_25C 0.284490 no
3d_25C 7d_15C 0.000700 yes
3d_25C 7d_30C 0.299545 no
3d_25C 10d_25C 0.577205 no
5d_25C 7d_25C 0.270969 no
5d_25C 7d_15C 0.000700 yes
5d_25C 7d_30C 0.301341 no
5d_25C 10d_25C 0.563327 no
7d_25C 7d_15C 0.000700 yes
7d_25C 7d_30C 0.017485 yes
7d_25C 10d_25C 0.718255 no
7d_15C 7d_30C 0.000700 yes
7d_15C 10d_25C 0.000700 yes
7d_30C 10d_25C 0.064497 no

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Pro_DTO377G3_2|g9483.t1
MSKIYVGNLSWHTSDESLRAAFGEYGNIVDSIVMVDRETGRSRGFGFVTFSSAEEAEAAINALNEQDLDGRRIRV
NLANARPSGGGGFGGGGGAGGAGGGRW*
Coding >Pro_DTO377G3_2|g9483.t1
ATGTCTAAGATCTACGTCGGAAACCTTTCATGGCACACCAGCGACGAGTCGCTGCGCGCGGCCTTCGGTGAGTAC
GGCAACATTGTCGACTCTATCGTCATGGTTGACCGTGAGACTGGTCGCTCCCGTGGATTCGGCTTCGTCACCTTC
TCTTCCGCTGAGGAGGCCGAGGCTGCCATCAACGCTCTTAACGAGCAGGATCTCGATGGTCGTCGCATCCGCGTC
AACCTCGCCAACGCCCGCCCCAGCGGTGGTGGTGGCTTCGGTGGCGGCGGTGGTGCCGGCGGTGCCGGTGGTGGC
CGTTGGTAA
Transcript >Pro_DTO377G3_2|g9483.t1
ATGTCTAAGATCTACGTCGGAAACCTTTCATGGCACACCAGCGACGAGTCGCTGCGCGCGGCCTTCGGTGAGTAC
GGCAACATTGTCGACTCTATCGTCATGGTTGACCGTGAGACTGGTCGCTCCCGTGGATTCGGCTTCGTCACCTTC
TCTTCCGCTGAGGAGGCCGAGGCTGCCATCAACGCTCTTAACGAGCAGGATCTCGATGGTCGTCGCATCCGCGTC
AACCTCGCCAACGCCCGCCCCAGCGGTGGTGGTGGCTTCGGTGGCGGCGGTGGTGCCGGCGGTGCCGGTGGTGGC
CGTTGGTAA
Gene >Pro_DTO377G3_2|g9483.t1
ATGTCTAAGATCTACGTCGGGTATGTCCAAAACCATCAAATTCCGATGCTGGACGCGTTATACTGACAGTCCTAC
TAGAAACCTTTCATGGCACACCAGCGACGAGTCGCTGCGCGCGGCCTTCGGTGAGTACGGCAACATTGTCGACTC
TGTACGTGAAAAATCCACAAATTTCCAATTTTTGCTTCGGAACAAGACACTAATGTTCCATCTCTAGATCGTCAT
GGTTGACCGTGAGACTGGTCGCTCCCGTGGATTCGGCTTCGTCACCTTCTCTTCCGCTGAGGAGGCCGAGGCTGC
CATCAACGCTCTTAACGAGCAGGAGTATGTTATCCCTCCTCCATACTACGAACACAGCTAATACAATCCAGTCTC
GATGGTCGTCGCATCCGCGTCAACCTCGCCAACGCCCGCCCCAGCGGTGGTGGTGGCTTCGGTGGCGGCGGTGGT
GCCGGCGGTGCCGGTGGTGGCCGTTGGTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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